RNA–Protein interactions for RNA: ENST00000545425.2

FOXA1-202, Transcript of forkhead box A1, humanhuman

TSL 2

Gene FOXA1, Length 1,806 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-202ENST00000545425 NISCHQ9Y2I1 1504 aa49.19■■■■■ 5.46
FOXA1-202ENST00000545425 CCDC180Q9P1Z9 1646 aa43.77■■■■■ 4.6
FOXA1-202ENST00000545425 ABCC9O60706 1549 aa43.11■■■■■ 4.49
FOXA1-202ENST00000545425 RB1CC1Q8TDY2 1594 aa41.39■■■■■ 4.22
FOXA1-202ENST00000545425 NACADO15069 1562 aa41.3■■■■■ 4.2
FOXA1-202ENST00000545425 DCAF8L2P0C7V8 631 aa41.28■■■■■ 4.2
FOXA1-202ENST00000545425 ZCCHC6Q5VYS8 1495 aaKnown RBP41.26■■■■■ 4.2
FOXA1-202ENST00000545425 MYO15BQ96JP2 1530 aa41■■■■■ 4.15
FOXA1-202ENST00000545425 DCAF1Q9Y4B6 1507 aa40.72■■■■■ 4.11
FOXA1-202ENST00000545425 SHROOM4Q9ULL8 1493 aa40.59■■■■■ 4.09
FOXA1-202ENST00000545425 PABPN1Q86U42 306 aaKnown RBP eCLIP40.3■■■■■ 4.04
FOXA1-202ENST00000545425 UNC13AQ9UPW8 1703 aa40.25■■■■■ 4.03
FOXA1-202ENST00000545425 BICRAQ9NZM4 1560 aa40.07■■■■■ 4.01
FOXA1-202ENST00000545425 SCRIBQ14160 1630 aa39.9■■■■□ 3.98
FOXA1-202ENST00000545425 SUPT5HO00267 1087 aaKnown RBP39.85■■■■□ 3.97
FOXA1-202ENST00000545425 DNAJC5BQ9UF47 199 aa39.81■■■■□ 3.96
FOXA1-202ENST00000545425 EIF4G1Q04637 1599 aaKnown RBP39.07■■■■□ 3.85
FOXA1-202ENST00000545425 CHIC1Q5VXU3 224 aa39.04■■■■□ 3.84
FOXA1-202ENST00000545425 CC2D2AQ9P2K1 1620 aa38.95■■■■□ 3.83
FOXA1-202ENST00000545425 CECR2Q9BXF3 1484 aa38.8■■■■□ 3.8
FOXA1-202ENST00000545425 RSF1Q96T23 1441 aaPredicted RBP38.35■■■■□ 3.73
FOXA1-202ENST00000545425 SMARCA4P51532 1647 aa38.16■■■■□ 3.7
FOXA1-202ENST00000545425 BAZ1AQ9NRL2 1556 aaPredicted RBP38.15■■■■□ 3.7
FOXA1-202ENST00000545425 NCAPD3P42695 1498 aa38.14■■■■□ 3.7
FOXA1-202ENST00000545425 ATAD2BQ9ULI0 1458 aa38.09■■■■□ 3.69
FOXA1-202ENST00000545425 SMARCA2P51531 1590 aa38.03■■■■□ 3.68
FOXA1-202ENST00000545425 HMGXB3Q12766 1538 aa37.87■■■■□ 3.65
FOXA1-202ENST00000545425 MROH2BQ7Z745 1585 aa37.87■■■■□ 3.65
FOXA1-202ENST00000545425 PEG3Q9GZU2 1588 aa37.84■■■■□ 3.65
FOXA1-202ENST00000545425 BAZ1BQ9UIG0 1483 aaKnown RBP37.76■■■■□ 3.64
FOXA1-202ENST00000545425 HRCP23327 699 aa37.73■■■■□ 3.63
FOXA1-202ENST00000545425 LOC105371045A0A1W2PR82 267 aa37.47■■■■□ 3.59
FOXA1-202ENST00000545425 TRIM41Q8WV44 630 aa37.47■■■■□ 3.59
FOXA1-202ENST00000545425 PCGF6Q9BYE7 350 aa37.43■■■■□ 3.58
FOXA1-202ENST00000545425 WIZO95785 1651 aa37.4■■■■□ 3.58
FOXA1-202ENST00000545425 ERCC6Q03468 1493 aa37.23■■■■□ 3.55
FOXA1-202ENST00000545425 TRIM26Q12899 539 aaPredicted RBP37.21■■■■□ 3.55
FOXA1-202ENST00000545425 NESP48681 1621 aa37.21■■■■□ 3.55
FOXA1-202ENST00000545425 TOP2AP11388 1531 aaKnown RBP37.15■■■■□ 3.54
FOXA1-202ENST00000545425 LAMC3Q9Y6N6 1575 aa37.12■■■■□ 3.53
FOXA1-202ENST00000545425 CADPSQ9ULU8 1353 aa37.04■■■■□ 3.52
FOXA1-202ENST00000545425 PDS5BQ9NTI5 1447 aa36.96■■■■□ 3.51
FOXA1-202ENST00000545425 CUX2O14529 1486 aa36.93■■■■□ 3.5
FOXA1-202ENST00000545425 CCDC88BA6NC98 1476 aa36.74■■■■□ 3.47
FOXA1-202ENST00000545425 CFTRP13569 1480 aa36.73■■■■□ 3.47
FOXA1-202ENST00000545425 ZEB1P37275 1124 aaPredicted RBP36.69■■■■□ 3.46
FOXA1-202ENST00000545425 KIF21AQ7Z4S6 1674 aa36.67■■■■□ 3.46
FOXA1-202ENST00000545425 FAM9AQ8IZU1 332 aaPredicted RBP36.67■■■■□ 3.46
FOXA1-202ENST00000545425 THOC2Q8NI27 1593 aaKnown RBP36.66■■■■□ 3.46
FOXA1-202ENST00000545425 FANCD2Q9BXW9 1451 aa36.56■■■■□ 3.44
FOXA1-202ENST00000545425 MRC2Q9UBG0 1479 aa36.54■■■■□ 3.44
FOXA1-202ENST00000545425 CEP164Q9UPV0 1460 aa36.54■■■■□ 3.44
FOXA1-202ENST00000545425 EEA1Q15075 1411 aa36.53■■■■□ 3.44
FOXA1-202ENST00000545425 WDR62O43379 1518 aa36.39■■■■□ 3.42
FOXA1-202ENST00000545425 ABCC8Q09428 1581 aa36.37■■■■□ 3.41
FOXA1-202ENST00000545425 PPARGC1BQ86YN6 1023 aaKnown RBP36.33■■■■□ 3.41
FOXA1-202ENST00000545425 WRNQ14191 1432 aaPredicted RBP eCLIP36.26■■■■□ 3.4
FOXA1-202ENST00000545425 PRDM2Q13029 1718 aa36.24■■■■□ 3.39
FOXA1-202ENST00000545425 TNIKQ9UKE5 1360 aa36.17■■■■□ 3.38
FOXA1-202ENST00000545425 URB2Q14146 1524 aaKnown RBP36.17■■■■□ 3.38
FOXA1-202ENST00000545425 DNAJC5Q9H3Z4 198 aa36.14■■■■□ 3.38
FOXA1-202ENST00000545425 SOGA1O94964 1423 aa36.02■■■■□ 3.36
FOXA1-202ENST00000545425 CSRNP3Q8WYN3 585 aa36.01■■■■□ 3.36
FOXA1-202ENST00000545425 CEP162Q5TB80 1403 aa36.01■■■■□ 3.36
FOXA1-202ENST00000545425 GOLGA3Q08378 1498 aa35.98■■■■□ 3.35
FOXA1-202ENST00000545425 EHMT2Q96KQ7 1210 aa35.97■■■■□ 3.35
FOXA1-202ENST00000545425 TOPBP1Q92547 1522 aa35.93■■■■□ 3.34
FOXA1-202ENST00000545425 KIF21BO75037 1637 aa35.88■■■■□ 3.33
FOXA1-202ENST00000545425 DNMBPQ6XZF7 1577 aa35.85■■■■□ 3.33
FOXA1-202ENST00000545425 IFT140Q96RY7 1462 aa35.81■■■■□ 3.32
FOXA1-202ENST00000545425 SYNJ1O43426 1573 aa35.81■■■■□ 3.32
FOXA1-202ENST00000545425 RUSC2Q8N2Y8 1516 aa35.74■■■■□ 3.31
FOXA1-202ENST00000545425 TOP2BQ02880 1626 aa35.64■■■■□ 3.3
FOXA1-202ENST00000545425 UBTFP17480 764 aaKnown RBP35.63■■■■□ 3.29
FOXA1-202ENST00000545425 POLA1P09884 1462 aaPredicted RBP35.61■■■■□ 3.29
FOXA1-202ENST00000545425 ZNF608Q9ULD9 1512 aaPredicted RBP35.61■■■■□ 3.29
FOXA1-202ENST00000545425 BIVM-ERCC5R4GMW8 1640 aa35.59■■■■□ 3.29
FOXA1-202ENST00000545425 CUX1P39880 1505 aa35.54■■■■□ 3.28
FOXA1-202ENST00000545425 TARBP1Q13395 1621 aaKnown RBP35.51■■■■□ 3.28
FOXA1-202ENST00000545425 FGD5Q6ZNL6 1462 aa35.48■■■■□ 3.27
FOXA1-202ENST00000545425 RAD54L2Q9Y4B4 1467 aa35.44■■■■□ 3.26
FOXA1-202ENST00000545425 OSCARQ8IYS5 282 aa35.44■■■■□ 3.26
FOXA1-202ENST00000545425 CCER1Q8TC90 406 aaPredicted RBP35.42■■■■□ 3.26
FOXA1-202ENST00000545425 EIF4G3O43432 1585 aaKnown RBP35.41■■■■□ 3.26
FOXA1-202ENST00000545425 AQRO60306 1485 aaKnown RBP eCLIP35.41■■■■□ 3.263e-7■■■■■ 55.8
FOXA1-202ENST00000545425 CLIP1P30622 1438 aa35.41■■■■□ 3.26
FOXA1-202ENST00000545425 ERICH3Q5RHP9 1530 aa35.38■■■■□ 3.26
FOXA1-202ENST00000545425 VPS8Q8N3P4 1428 aa35.36■■■■□ 3.25
FOXA1-202ENST00000545425 TDRD9Q8NDG6 1382 aaKnown RBP35.33■■■■□ 3.25
FOXA1-202ENST00000545425 WDR97A6NE52 1622 aa35.27■■■■□ 3.24
FOXA1-202ENST00000545425 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.27■■■■□ 3.24
FOXA1-202ENST00000545425 RAPGEF2Q9Y4G8 1499 aa35.26■■■■□ 3.23
FOXA1-202ENST00000545425 PRXQ9BXM0 1461 aa35.2■■■■□ 3.23
FOXA1-202ENST00000545425 ABCA10Q8WWZ4 1543 aa35.15■■■■□ 3.22
FOXA1-202ENST00000545425 GRIN2BQ13224 1484 aa35.12■■■■□ 3.21
FOXA1-202ENST00000545425 FBLN2P98095 1184 aa35.1■■■■□ 3.21
FOXA1-202ENST00000545425 KIF27Q86VH2 1401 aa35.08■■■■□ 3.21
FOXA1-202ENST00000545425 GAPVD1Q14C86 1478 aa35.07■■■■□ 3.21
FOXA1-202ENST00000545425 APLP2Q06481 763 aa35.06■■■■□ 3.2
FOXA1-202ENST00000545425 SNAPC4Q5SXM2 1469 aa35.05■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms