RNA–Protein interactions for RNA: ENST00000542778.5

NELFA-216, Transcript of negative elongation factor complex member A, humanhuman

TSL 1 (best) BASIC

Gene NELFA, Length 2,465 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFA-216ENST00000542778 NISCHQ9Y2I1 1504 aa35.81■■■■□ 3.32
NELFA-216ENST00000542778 CCDC180Q9P1Z9 1646 aa30.86■■■□□ 2.53
NELFA-216ENST00000542778 ZCCHC6Q5VYS8 1495 aaKnown RBP30.12■■■□□ 2.41
NELFA-216ENST00000542778 SHROOM4Q9ULL8 1493 aa29.92■■■□□ 2.38
NELFA-216ENST00000542778 DCAF8L2P0C7V8 631 aa29.92■■■□□ 2.38
NELFA-216ENST00000542778 ABCC9O60706 1549 aa29.37■■■□□ 2.29
NELFA-216ENST00000542778 DCAF1Q9Y4B6 1507 aa29.34■■■□□ 2.29
NELFA-216ENST00000542778 SUPT5HO00267 1087 aaKnown RBP28.88■■■□□ 2.21
NELFA-216ENST00000542778 SCRIBQ14160 1630 aa28.82■■■□□ 2.2
NELFA-216ENST00000542778 MYO15BQ96JP2 1530 aa28.81■■■□□ 2.2
NELFA-216ENST00000542778 HRCP23327 699 aa28.7■■■□□ 2.19
NELFA-216ENST00000542778 NACADO15069 1562 aa28.7■■■□□ 2.18
NELFA-216ENST00000542778 RB1CC1Q8TDY2 1594 aa28.44■■■□□ 2.14
NELFA-216ENST00000542778 UNC13AQ9UPW8 1703 aa28.13■■■□□ 2.09
NELFA-216ENST00000542778 CECR2Q9BXF3 1484 aa28.05■■■□□ 2.08
NELFA-216ENST00000542778 PPARGC1BQ86YN6 1023 aaKnown RBP28■■■□□ 2.07
NELFA-216ENST00000542778 RSF1Q96T23 1441 aaPredicted RBP28■■■□□ 2.07
NELFA-216ENST00000542778 PCGF6Q9BYE7 350 aa27.96■■■□□ 2.07
NELFA-216ENST00000542778 PABPN1Q86U42 306 aaKnown RBP eCLIP27.9■■■□□ 2.06
NELFA-216ENST00000542778 PELP1Q8IZL8 1130 aaKnown RBP27.89■■■□□ 2.06
NELFA-216ENST00000542778 MROH2BQ7Z745 1585 aa27.84■■■□□ 2.05
NELFA-216ENST00000542778 BICRAQ9NZM4 1560 aa27.78■■■□□ 2.04
NELFA-216ENST00000542778 CHIC1Q5VXU3 224 aa27.68■■■□□ 2.02
NELFA-216ENST00000542778 WIZO95785 1651 aa27.67■■■□□ 2.02
NELFA-216ENST00000542778 BAZ1AQ9NRL2 1556 aaPredicted RBP27.54■■■□□ 2
NELFA-216ENST00000542778 SMARCA4P51532 1647 aa27.48■■□□□ 1.99
NELFA-216ENST00000542778 SCAF1Q9H7N4 1312 aaKnown RBP27.19■■□□□ 1.94
NELFA-216ENST00000542778 TOP2AP11388 1531 aaKnown RBP27.15■■□□□ 1.94
NELFA-216ENST00000542778 TRIM26Q12899 539 aaPredicted RBP27.11■■□□□ 1.93
NELFA-216ENST00000542778 CCDC88BA6NC98 1476 aa27.03■■□□□ 1.92
NELFA-216ENST00000542778 SMARCA2P51531 1590 aa27.02■■□□□ 1.92
NELFA-216ENST00000542778 ZEB1P37275 1124 aaPredicted RBP26.97■■□□□ 1.91
NELFA-216ENST00000542778 PEG3Q9GZU2 1588 aa26.97■■□□□ 1.91
NELFA-216ENST00000542778 LOC105371045A0A1W2PR82 267 aa26.96■■□□□ 1.91
NELFA-216ENST00000542778 ATAD2BQ9ULI0 1458 aa26.96■■□□□ 1.91
NELFA-216ENST00000542778 TRIM41Q8WV44 630 aa26.92■■□□□ 1.9
NELFA-216ENST00000542778 EIF4G1Q04637 1599 aaKnown RBP26.89■■□□□ 1.9
NELFA-216ENST00000542778 MYT1Q01538 1121 aa26.84■■□□□ 1.89
NELFA-216ENST00000542778 BAZ1BQ9UIG0 1483 aaKnown RBP26.82■■□□□ 1.88
NELFA-216ENST00000542778 FAM9AQ8IZU1 332 aaPredicted RBP26.74■■□□□ 1.87
NELFA-216ENST00000542778 ABCC8Q09428 1581 aa26.73■■□□□ 1.87
NELFA-216ENST00000542778 EHMT2Q96KQ7 1210 aa26.58■■□□□ 1.85
NELFA-216ENST00000542778 NCAPD3P42695 1498 aa26.57■■□□□ 1.84
NELFA-216ENST00000542778 ACIN1Q9UKV3 1341 aaKnown RBP26.51■■□□□ 1.83
NELFA-216ENST00000542778 HMGXB3Q12766 1538 aa26.5■■□□□ 1.83
NELFA-216ENST00000542778 CC2D2AQ9P2K1 1620 aa26.45■■□□□ 1.82
NELFA-216ENST00000542778 NEUROD1Q13562 356 aa26.39■■□□□ 1.82
NELFA-216ENST00000542778 WRNQ14191 1432 aaPredicted RBP eCLIP26.3■■□□□ 1.8
NELFA-216ENST00000542778 SYNJ1O43426 1573 aa26.28■■□□□ 1.8
NELFA-216ENST00000542778 SOGA1O94964 1423 aa26.27■■□□□ 1.8
NELFA-216ENST00000542778 GTF3C3Q9Y5Q9 886 aa26.24■■□□□ 1.79
NELFA-216ENST00000542778 RUSC2Q8N2Y8 1516 aa26.23■■□□□ 1.79
NELFA-216ENST00000542778 DNAJC5BQ9UF47 199 aa26.13■■□□□ 1.77
NELFA-216ENST00000542778 CENPBP07199 599 aaPredicted RBP26.13■■□□□ 1.77
NELFA-216ENST00000542778 CFTRP13569 1480 aa26.12■■□□□ 1.77
NELFA-216ENST00000542778 CADPSQ9ULU8 1353 aa25.99■■□□□ 1.75
NELFA-216ENST00000542778 TOP2BQ02880 1626 aa25.99■■□□□ 1.75
NELFA-216ENST00000542778 CUX1P39880 1505 aa25.97■■□□□ 1.75
NELFA-216ENST00000542778 DIEXFQ68CQ4 756 aaKnown RBP25.96■■□□□ 1.75
NELFA-216ENST00000542778 CSRNP3Q8WYN3 585 aa25.95■■□□□ 1.75
NELFA-216ENST00000542778 NESP48681 1621 aa25.94■■□□□ 1.74
NELFA-216ENST00000542778 BIVM-ERCC5R4GMW8 1640 aa25.92■■□□□ 1.74
NELFA-216ENST00000542778 PRDM2Q13029 1718 aa25.91■■□□□ 1.74
NELFA-216ENST00000542778 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.88■■□□□ 1.73
NELFA-216ENST00000542778 EEA1Q15075 1411 aa25.83■■□□□ 1.73
NELFA-216ENST00000542778 CCER1Q8TC90 406 aaPredicted RBP25.83■■□□□ 1.73
NELFA-216ENST00000542778 UBTFP17480 764 aaKnown RBP25.77■■□□□ 1.72
NELFA-216ENST00000542778 FANCD2Q9BXW9 1451 aa25.76■■□□□ 1.71
NELFA-216ENST00000542778 GOLGA3Q08378 1498 aa25.68■■□□□ 1.7
NELFA-216ENST00000542778 CEP162Q5TB80 1403 aa25.67■■□□□ 1.7
NELFA-216ENST00000542778 RAPGEF2Q9Y4G8 1499 aa25.66■■□□□ 1.7
NELFA-216ENST00000542778 TNIKQ9UKE5 1360 aa25.66■■□□□ 1.7
NELFA-216ENST00000542778 FGD5Q6ZNL6 1462 aa25.62■■□□□ 1.69
NELFA-216ENST00000542778 CEP164Q9UPV0 1460 aa25.62■■□□□ 1.69
NELFA-216ENST00000542778 KIF21BO75037 1637 aa25.62■■□□□ 1.69
NELFA-216ENST00000542778 RANGAP1P46060 587 aaPredicted RBP25.58■■□□□ 1.69
NELFA-216ENST00000542778 LAMC3Q9Y6N6 1575 aa25.58■■□□□ 1.68
NELFA-216ENST00000542778 KIF27Q86VH2 1401 aa25.53■■□□□ 1.68
NELFA-216ENST00000542778 CUX2O14529 1486 aa25.52■■□□□ 1.68
NELFA-216ENST00000542778 TOPBP1Q92547 1522 aa25.51■■□□□ 1.67
NELFA-216ENST00000542778 RAD54L2Q9Y4B4 1467 aa25.5■■□□□ 1.67
NELFA-216ENST00000542778 KIF21AQ7Z4S6 1674 aa25.49■■□□□ 1.67
NELFA-216ENST00000542778 DNMBPQ6XZF7 1577 aa25.48■■□□□ 1.67
NELFA-216ENST00000542778 URB2Q14146 1524 aaKnown RBP25.48■■□□□ 1.67
NELFA-216ENST00000542778 PRXQ9BXM0 1461 aa25.48■■□□□ 1.67
NELFA-216ENST00000542778 TTBK1Q5TCY1 1321 aaPredicted RBP25.46■■□□□ 1.67
NELFA-216ENST00000542778 ZNF316A6NFI3 1004 aaPredicted RBP25.46■■□□□ 1.67
NELFA-216ENST00000542778 YTHDC1Q96MU7 727 aaKnown RBP25.46■■□□□ 1.67
NELFA-216ENST00000542778 POLA1P09884 1462 aaPredicted RBP25.44■■□□□ 1.66
NELFA-216ENST00000542778 PDS5BQ9NTI5 1447 aa25.4■■□□□ 1.66
NELFA-216ENST00000542778 IGF1RP08069 1367 aa25.39■■□□□ 1.65
NELFA-216ENST00000542778 CLIP1P30622 1438 aa25.37■■□□□ 1.65
NELFA-216ENST00000542778 ERICH3Q5RHP9 1530 aa25.34■■□□□ 1.65
NELFA-216ENST00000542778 MIER1Q8N108 512 aa25.28■■□□□ 1.64
NELFA-216ENST00000542778 ABCA10Q8WWZ4 1543 aa25.27■■□□□ 1.64
NELFA-216ENST00000542778 CARMIL1Q5VZK9 1371 aa25.24■■□□□ 1.63
NELFA-216ENST00000542778 TDRD9Q8NDG6 1382 aaKnown RBP25.23■■□□□ 1.63
NELFA-216ENST00000542778 WDR97A6NE52 1622 aa25.19■■□□□ 1.62
NELFA-216ENST00000542778 VPS8Q8N3P4 1428 aa25.13■■□□□ 1.61
NELFA-216ENST00000542778 ARAP1Q96P48 1450 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms