RNA–Protein interactions for RNA: ENST00000541774.5

ERBB2-204, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 5 BASIC

Gene ERBB2, Length 4,341 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-204ENST00000541774 NISCHQ9Y2I1 1504 aa19.29■□□□□ 0.68
ERBB2-204ENST00000541774 PELP1Q8IZL8 1130 aaKnown RBP18.65■□□□□ 0.58
ERBB2-204ENST00000541774 DCAF8L2P0C7V8 631 aa18.57■□□□□ 0.56
ERBB2-204ENST00000541774 MYT1Q01538 1121 aa18.39■□□□□ 0.53
ERBB2-204ENST00000541774 SHROOM4Q9ULL8 1493 aa17.79■□□□□ 0.44
ERBB2-204ENST00000541774 PCGF6Q9BYE7 350 aa17.7■□□□□ 0.42
ERBB2-204ENST00000541774 SUPT5HO00267 1087 aaKnown RBP17.58■□□□□ 0.41
ERBB2-204ENST00000541774 HRCP23327 699 aa17.58■□□□□ 0.4
ERBB2-204ENST00000541774 CENPBP07199 599 aaPredicted RBP17.43■□□□□ 0.38
ERBB2-204ENST00000541774 PPARGC1BQ86YN6 1023 aaKnown RBP17.28■□□□□ 0.36
ERBB2-204ENST00000541774 ZEB1P37275 1124 aaPredicted RBP17.18■□□□□ 0.34
ERBB2-204ENST00000541774 TTBK1Q5TCY1 1321 aaPredicted RBP16.99■□□□□ 0.31
ERBB2-204ENST00000541774 ERICH6Q7L0X2 663 aa16.99■□□□□ 0.31
ERBB2-204ENST00000541774 YTHDC1Q96MU7 727 aaKnown RBP16.92■□□□□ 0.3
ERBB2-204ENST00000541774 EHMT2Q96KQ7 1210 aa16.86■□□□□ 0.29
ERBB2-204ENST00000541774 GTF3C3Q9Y5Q9 886 aa16.82■□□□□ 0.28
ERBB2-204ENST00000541774 CCER1Q8TC90 406 aaPredicted RBP16.72■□□□□ 0.27
ERBB2-204ENST00000541774 SCAF1Q9H7N4 1312 aaKnown RBP16.72■□□□□ 0.27
ERBB2-204ENST00000541774 TRIM26Q12899 539 aaPredicted RBP16.68■□□□□ 0.26
ERBB2-204ENST00000541774 ACIN1Q9UKV3 1341 aaKnown RBP16.63■□□□□ 0.25
ERBB2-204ENST00000541774 ABCC9O60706 1549 aa16.6■□□□□ 0.25
ERBB2-204ENST00000541774 FAM9AQ8IZU1 332 aaPredicted RBP16.51■□□□□ 0.23
ERBB2-204ENST00000541774 DIEXFQ68CQ4 756 aaKnown RBP16.45■□□□□ 0.22
ERBB2-204ENST00000541774 NEFLP07196 543 aa16.44■□□□□ 0.22
ERBB2-204ENST00000541774 BCL11AQ9H165 835 aa16.37■□□□□ 0.21
ERBB2-204ENST00000541774 NEUROD1Q13562 356 aa16.36■□□□□ 0.21
ERBB2-204ENST00000541774 PABPN1Q86U42 306 aaKnown RBP eCLIP16.31■□□□□ 0.23e-9■□□□□ 10.8
ERBB2-204ENST00000541774 LOC105371045A0A1W2PR82 267 aa16.24■□□□□ 0.19
ERBB2-204ENST00000541774 CHIC1Q5VXU3 224 aa16.18■□□□□ 0.18
ERBB2-204ENST00000541774 TRIM41Q8WV44 630 aa16.15■□□□□ 0.18
ERBB2-204ENST00000541774 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.12■□□□□ 0.17
ERBB2-204ENST00000541774 ANP32EQ9BTT0 268 aa16.11■□□□□ 0.17
ERBB2-204ENST00000541774 RANGAP1P46060 587 aaPredicted RBP16.11■□□□□ 0.17
ERBB2-204ENST00000541774 RTL5Q5HYW3 569 aaPredicted RBP16.09■□□□□ 0.17
ERBB2-204ENST00000541774 BCANQ96GW7 911 aa16.09■□□□□ 0.17
ERBB2-204ENST00000541774 ZCCHC6Q5VYS8 1495 aaKnown RBP16.02■□□□□ 0.15
ERBB2-204ENST00000541774 EIF5BO60841 1220 aaKnown RBP16■□□□□ 0.15
ERBB2-204ENST00000541774 APLP2Q06481 763 aa16■□□□□ 0.15
ERBB2-204ENST00000541774 CCDC180Q9P1Z9 1646 aa15.92■□□□□ 0.14
ERBB2-204ENST00000541774 SCRIBQ14160 1630 aa15.87■□□□□ 0.13
ERBB2-204ENST00000541774 ZNF316A6NFI3 1004 aaPredicted RBP15.85■□□□□ 0.13
ERBB2-204ENST00000541774 MYT1LQ9UL68 1186 aa15.8■□□□□ 0.12
ERBB2-204ENST00000541774 PRKCSHP14314 528 aaPredicted RBP15.78■□□□□ 0.12
ERBB2-204ENST00000541774 UBTFP17480 764 aaKnown RBP15.78■□□□□ 0.12
ERBB2-204ENST00000541774 CDK11AQ9UQ88 783 aaPredicted RBP15.78■□□□□ 0.12
ERBB2-204ENST00000541774 CLSPNQ9HAW4 1339 aa15.77■□□□□ 0.12
ERBB2-204ENST00000541774 CSRNP3Q8WYN3 585 aa15.75■□□□□ 0.11
ERBB2-204ENST00000541774 DAXXQ9UER7 740 aaPredicted RBP15.75■□□□□ 0.11
ERBB2-204ENST00000541774 GLIPR1L2Q4G1C9 344 aa15.7■□□□□ 0.1
ERBB2-204ENST00000541774 FKBP8Q14318 412 aa15.66■□□□□ 0.1
ERBB2-204ENST00000541774 HNRNPUL2Q1KMD3 747 aaKnown RBP15.63■□□□□ 0.09
ERBB2-204ENST00000541774 NBR1Q14596 966 aa15.63■□□□□ 0.09
ERBB2-204ENST00000541774 ATP1B4Q9UN42 357 aaPredicted RBP15.63■□□□□ 0.09
ERBB2-204ENST00000541774 DCAF1Q9Y4B6 1507 aa15.6■□□□□ 0.09
ERBB2-204ENST00000541774 MIER1Q8N108 512 aa15.57■□□□□ 0.08
ERBB2-204ENST00000541774 RTN4Q9NQC3 1192 aaKnown RBP15.52■□□□□ 0.07
ERBB2-204ENST00000541774 ANP32AP39687 249 aaKnown RBP15.48■□□□□ 0.07
ERBB2-204ENST00000541774 SUPT16HQ9Y5B9 1047 aaKnown RBP15.46■□□□□ 0.07
ERBB2-204ENST00000541774 ITGAEP38570 1179 aa15.46■□□□□ 0.07
ERBB2-204ENST00000541774 DEKP35659 375 aaKnown RBP15.44■□□□□ 0.06
ERBB2-204ENST00000541774 TSHZ2Q9NRE2 1034 aa15.41■□□□□ 0.06
ERBB2-204ENST00000541774 CECR2Q9BXF3 1484 aa15.39■□□□□ 0.05
ERBB2-204ENST00000541774 RSF1Q96T23 1441 aaPredicted RBP15.37■□□□□ 0.05
ERBB2-204ENST00000541774 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.37■□□□□ 0.05
ERBB2-204ENST00000541774 RB1CC1Q8TDY2 1594 aa15.37■□□□□ 0.05
ERBB2-204ENST00000541774 CCDC136Q96JN2 1154 aa15.35■□□□□ 0.05
ERBB2-204ENST00000541774 ZBTB47Q9UFB7 747 aaPredicted RBP15.33■□□□□ 0.04
ERBB2-204ENST00000541774 RBM19Q9Y4C8 960 aaKnown RBP15.33■□□□□ 0.04
ERBB2-204ENST00000541774 MYO15BQ96JP2 1530 aa15.33■□□□□ 0.04
ERBB2-204ENST00000541774 NPM2Q86SE8 214 aaKnown RBP15.32■□□□□ 0.04
ERBB2-204ENST00000541774 NACADO15069 1562 aa15.31■□□□□ 0.04
ERBB2-204ENST00000541774 ANP32CO43423 234 aa15.28■□□□□ 0.04
ERBB2-204ENST00000541774 ANO8Q9HCE9 1232 aaPredicted RBP15.24■□□□□ 0.03
ERBB2-204ENST00000541774 CNGB1Q14028 1251 aaPredicted RBP15.22■□□□□ 0.03
ERBB2-204ENST00000541774 TRIM52Q96A61 297 aa15.2■□□□□ 0.02
ERBB2-204ENST00000541774 IRX6P78412 446 aaPredicted RBP15.17■□□□□ 0.02
ERBB2-204ENST00000541774 ERICH6BQ5W0A0 696 aa15.16■□□□□ 0.02
ERBB2-204ENST00000541774 NEFMP07197 916 aa15.14■□□□□ 0.01
ERBB2-204ENST00000541774 P3H3Q8IVL6 736 aa15.12■□□□□ 0.01
ERBB2-204ENST00000541774 NOP58Q9Y2X3 529 aaKnown RBP15.12■□□□□ 0.01
ERBB2-204ENST00000541774 MROH2BQ7Z745 1585 aa15.11■□□□□ 0.01
ERBB2-204ENST00000541774 POLR3GLQ9BT43 218 aa15.09■□□□□ 0.01
ERBB2-204ENST00000541774 FBLN2P98095 1184 aa15.08■□□□□ 0.01
ERBB2-204ENST00000541774 HNRNPUQ00839 825 aaKnown RBP eCLIP15.08■□□□□ 0
ERBB2-204ENST00000541774 DDX10Q13206 875 aaKnown RBP15.06■□□□□ 0
ERBB2-204ENST00000541774 ARID3CA6NKF2 412 aa15.05■□□□□ -0
ERBB2-204ENST00000541774 ARXQ96QS3 562 aa15.03■□□□□ -0
ERBB2-204ENST00000541774 SALL2Q9Y467 1007 aaPredicted RBP15.01□□□□□ -0.01
ERBB2-204ENST00000541774 PKNOX2Q96KN3 472 aa15□□□□□ -0.01
ERBB2-204ENST00000541774 NAP1L5Q96NT1 182 aaPredicted RBP15□□□□□ -0.01
ERBB2-204ENST00000541774 LAS1LQ9Y4W2 734 aaKnown RBP14.98□□□□□ -0.01
ERBB2-204ENST00000541774 VSIG10Q8N0Z9 540 aa14.98□□□□□ -0.01
ERBB2-204ENST00000541774 BAZ1BQ9UIG0 1483 aaKnown RBP14.95□□□□□ -0.02
ERBB2-204ENST00000541774 BAZ1AQ9NRL2 1556 aaPredicted RBP14.94□□□□□ -0.02
ERBB2-204ENST00000541774 PPM1GO15355 546 aaPredicted RBP14.93□□□□□ -0.02
ERBB2-204ENST00000541774 WIZO95785 1651 aa14.92□□□□□ -0.02
ERBB2-204ENST00000541774 PODXL2Q9NZ53 605 aa14.91□□□□□ -0.02
ERBB2-204ENST00000541774 SLC24A1O60721 1099 aa14.87□□□□□ -0.03
ERBB2-204ENST00000541774 FAM50AQ14320 339 aaKnown RBP14.87□□□□□ -0.03
ERBB2-204ENST00000541774 TIMELESSQ9UNS1 1208 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms