RNA–Protein interactions for RNA: ENST00000541242.1

AC005840.4-201, humanhuman

BASIC

Gene AC005840.4, Length 2,494 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC005840.4-201ENST00000541242 NISCHQ9Y2I1 1504 aa30.31■■■□□ 2.44
AC005840.4-201ENST00000541242 CCDC180Q9P1Z9 1646 aa25.93■■□□□ 1.74
AC005840.4-201ENST00000541242 ZCCHC6Q5VYS8 1495 aaKnown RBP25.57■■□□□ 1.68
AC005840.4-201ENST00000541242 SHROOM4Q9ULL8 1493 aa25.55■■□□□ 1.68
AC005840.4-201ENST00000541242 DCAF8L2P0C7V8 631 aa25.14■■□□□ 1.62
AC005840.4-201ENST00000541242 HRCP23327 699 aa25.07■■□□□ 1.6
AC005840.4-201ENST00000541242 SUPT5HO00267 1087 aaKnown RBP25.02■■□□□ 1.6
AC005840.4-201ENST00000541242 DCAF1Q9Y4B6 1507 aa24.88■■□□□ 1.57
AC005840.4-201ENST00000541242 MYO15BQ96JP2 1530 aa24.75■■□□□ 1.55
AC005840.4-201ENST00000541242 PPARGC1BQ86YN6 1023 aaKnown RBP24.73■■□□□ 1.55
AC005840.4-201ENST00000541242 PCGF6Q9BYE7 350 aa24.71■■□□□ 1.55
AC005840.4-201ENST00000541242 ABCC9O60706 1549 aa24.58■■□□□ 1.52
AC005840.4-201ENST00000541242 CHIC1Q5VXU3 224 aa24.51■■□□□ 1.51
AC005840.4-201ENST00000541242 SCRIBQ14160 1630 aa24.23■■□□□ 1.47
AC005840.4-201ENST00000541242 NACADO15069 1562 aa24.05■■□□□ 1.44
AC005840.4-201ENST00000541242 LOC105371045A0A1W2PR82 267 aa24.03■■□□□ 1.44
AC005840.4-201ENST00000541242 RSF1Q96T23 1441 aaPredicted RBP23.86■■□□□ 1.41
AC005840.4-201ENST00000541242 PELP1Q8IZL8 1130 aaKnown RBP23.85■■□□□ 1.41
AC005840.4-201ENST00000541242 TRIM26Q12899 539 aaPredicted RBP23.83■■□□□ 1.41
AC005840.4-201ENST00000541242 RB1CC1Q8TDY2 1594 aa23.78■■□□□ 1.4
AC005840.4-201ENST00000541242 SCAF1Q9H7N4 1312 aaKnown RBP23.74■■□□□ 1.39
AC005840.4-201ENST00000541242 CECR2Q9BXF3 1484 aa23.68■■□□□ 1.38
AC005840.4-201ENST00000541242 MROH2BQ7Z745 1585 aa23.55■■□□□ 1.36
AC005840.4-201ENST00000541242 ZEB1P37275 1124 aaPredicted RBP23.5■■□□□ 1.35
AC005840.4-201ENST00000541242 WIZO95785 1651 aa23.41■■□□□ 1.34
AC005840.4-201ENST00000541242 UNC13AQ9UPW8 1703 aa23.4■■□□□ 1.34
AC005840.4-201ENST00000541242 BAZ1AQ9NRL2 1556 aaPredicted RBP23.29■■□□□ 1.32
AC005840.4-201ENST00000541242 PABPN1Q86U42 306 aaKnown RBP eCLIP23.21■■□□□ 1.31
AC005840.4-201ENST00000541242 TRIM41Q8WV44 630 aa23.2■■□□□ 1.3
AC005840.4-201ENST00000541242 FAM9AQ8IZU1 332 aaPredicted RBP23.17■■□□□ 1.3
AC005840.4-201ENST00000541242 EHMT2Q96KQ7 1210 aa23.17■■□□□ 1.3
AC005840.4-201ENST00000541242 SMARCA4P51532 1647 aa23.15■■□□□ 1.3
AC005840.4-201ENST00000541242 NEUROD1Q13562 356 aa23.13■■□□□ 1.29
AC005840.4-201ENST00000541242 BICRAQ9NZM4 1560 aa23.13■■□□□ 1.29
AC005840.4-201ENST00000541242 ACIN1Q9UKV3 1341 aaKnown RBP23.12■■□□□ 1.29
AC005840.4-201ENST00000541242 TOP2AP11388 1531 aaKnown RBP23.03■■□□□ 1.28
AC005840.4-201ENST00000541242 GTF3C3Q9Y5Q9 886 aa22.98■■□□□ 1.27
AC005840.4-201ENST00000541242 EIF4G1Q04637 1599 aaKnown RBP22.97■■□□□ 1.27
AC005840.4-201ENST00000541242 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.96■■□□□ 1.27
AC005840.4-201ENST00000541242 MYT1Q01538 1121 aa22.95■■□□□ 1.26
AC005840.4-201ENST00000541242 CCDC88BA6NC98 1476 aa22.93■■□□□ 1.26
AC005840.4-201ENST00000541242 SMARCA2P51531 1590 aa22.9■■□□□ 1.26
AC005840.4-201ENST00000541242 CCER1Q8TC90 406 aaPredicted RBP22.84■■□□□ 1.25
AC005840.4-201ENST00000541242 DIEXFQ68CQ4 756 aaKnown RBP22.81■■□□□ 1.24
AC005840.4-201ENST00000541242 CENPBP07199 599 aaPredicted RBP22.77■■□□□ 1.24
AC005840.4-201ENST00000541242 ABCC8Q09428 1581 aa22.75■■□□□ 1.23
AC005840.4-201ENST00000541242 PEG3Q9GZU2 1588 aa22.74■■□□□ 1.23
AC005840.4-201ENST00000541242 ATAD2BQ9ULI0 1458 aa22.64■■□□□ 1.22
AC005840.4-201ENST00000541242 TTBK1Q5TCY1 1321 aaPredicted RBP22.58■■□□□ 1.21
AC005840.4-201ENST00000541242 YTHDC1Q96MU7 727 aaKnown RBP22.53■■□□□ 1.2
AC005840.4-201ENST00000541242 BAZ1BQ9UIG0 1483 aaKnown RBP22.53■■□□□ 1.2
AC005840.4-201ENST00000541242 SOGA1O94964 1423 aa22.47■■□□□ 1.19
AC005840.4-201ENST00000541242 RUSC2Q8N2Y8 1516 aa22.4■■□□□ 1.18
AC005840.4-201ENST00000541242 WRNQ14191 1432 aaPredicted RBP eCLIP22.39■■□□□ 1.18
AC005840.4-201ENST00000541242 ZNF316A6NFI3 1004 aaPredicted RBP22.36■■□□□ 1.17
AC005840.4-201ENST00000541242 SYNJ1O43426 1573 aa22.32■■□□□ 1.16
AC005840.4-201ENST00000541242 CSRNP3Q8WYN3 585 aa22.3■■□□□ 1.16
AC005840.4-201ENST00000541242 MIER1Q8N108 512 aa22.28■■□□□ 1.16
AC005840.4-201ENST00000541242 EEA1Q15075 1411 aa22.27■■□□□ 1.16
AC005840.4-201ENST00000541242 NCAPD3P42695 1498 aa22.26■■□□□ 1.15
AC005840.4-201ENST00000541242 HMGXB3Q12766 1538 aa22.22■■□□□ 1.15
AC005840.4-201ENST00000541242 CEP162Q5TB80 1403 aa22.19■■□□□ 1.14
AC005840.4-201ENST00000541242 TNIKQ9UKE5 1360 aa22.19■■□□□ 1.14
AC005840.4-201ENST00000541242 CC2D2AQ9P2K1 1620 aa22.16■■□□□ 1.14
AC005840.4-201ENST00000541242 UBTFP17480 764 aaKnown RBP22.14■■□□□ 1.13
AC005840.4-201ENST00000541242 GOLGA3Q08378 1498 aa22.1■■□□□ 1.13
AC005840.4-201ENST00000541242 TOP2BQ02880 1626 aa22.07■■□□□ 1.12
AC005840.4-201ENST00000541242 CEP164Q9UPV0 1460 aa22.02■■□□□ 1.12
AC005840.4-201ENST00000541242 KIF21BO75037 1637 aa22.01■■□□□ 1.11
AC005840.4-201ENST00000541242 BIVM-ERCC5R4GMW8 1640 aa22.01■■□□□ 1.11
AC005840.4-201ENST00000541242 HNRNPUL2Q1KMD3 747 aaKnown RBP21.99■■□□□ 1.11
AC005840.4-201ENST00000541242 CFTRP13569 1480 aa21.98■■□□□ 1.11
AC005840.4-201ENST00000541242 CUX1P39880 1505 aa21.95■■□□□ 1.1
AC005840.4-201ENST00000541242 RAPGEF2Q9Y4G8 1499 aa21.94■■□□□ 1.1
AC005840.4-201ENST00000541242 DNAJC5BQ9UF47 199 aa21.89■■□□□ 1.1
AC005840.4-201ENST00000541242 SUPT16HQ9Y5B9 1047 aaKnown RBP21.87■■□□□ 1.09
AC005840.4-201ENST00000541242 CLIP1P30622 1438 aa21.85■■□□□ 1.09
AC005840.4-201ENST00000541242 CADPSQ9ULU8 1353 aa21.8■■□□□ 1.08
AC005840.4-201ENST00000541242 PRDM2Q13029 1718 aa21.79■■□□□ 1.08
AC005840.4-201ENST00000541242 RANGAP1P46060 587 aaPredicted RBP21.78■■□□□ 1.08
AC005840.4-201ENST00000541242 PRXQ9BXM0 1461 aa21.78■■□□□ 1.08
AC005840.4-201ENST00000541242 TSHZ2Q9NRE2 1034 aa21.75■■□□□ 1.07
AC005840.4-201ENST00000541242 KIF27Q86VH2 1401 aa21.72■■□□□ 1.07
AC005840.4-201ENST00000541242 ERICH3Q5RHP9 1530 aa21.71■■□□□ 1.07
AC005840.4-201ENST00000541242 VPS8Q8N3P4 1428 aa21.71■■□□□ 1.07
AC005840.4-201ENST00000541242 ANP32EQ9BTT0 268 aa21.7■■□□□ 1.06
AC005840.4-201ENST00000541242 CLSPNQ9HAW4 1339 aa21.62■■□□□ 1.05
AC005840.4-201ENST00000541242 BCL11AQ9H165 835 aa21.62■■□□□ 1.05
AC005840.4-201ENST00000541242 CUX2O14529 1486 aa21.6■■□□□ 1.05
AC005840.4-201ENST00000541242 FGD5Q6ZNL6 1462 aa21.59■■□□□ 1.05
AC005840.4-201ENST00000541242 FANCD2Q9BXW9 1451 aa21.58■■□□□ 1.05
AC005840.4-201ENST00000541242 ARAP1Q96P48 1450 aa21.57■■□□□ 1.04
AC005840.4-201ENST00000541242 NESP48681 1621 aa21.56■■□□□ 1.04
AC005840.4-201ENST00000541242 IGF1RP08069 1367 aa21.56■■□□□ 1.04
AC005840.4-201ENST00000541242 APLP2Q06481 763 aa21.53■■□□□ 1.04
AC005840.4-201ENST00000541242 BCANQ96GW7 911 aa21.53■■□□□ 1.04
AC005840.4-201ENST00000541242 KCNH8Q96L42 1107 aa21.5■■□□□ 1.03
AC005840.4-201ENST00000541242 DHX57Q6P158 1386 aaKnown RBP21.48■■□□□ 1.03
AC005840.4-201ENST00000541242 CARMIL1Q5VZK9 1371 aa21.44■■□□□ 1.02
AC005840.4-201ENST00000541242 ARHGAP35Q9NRY4 1499 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 719.5 ms