RNA–Protein interactions for RNA: ENST00000540828.6

PTMS-205, Transcript of parathymosin, humanhuman

TSL 1 (best)

Gene PTMS, Length 644 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTMS-205ENST00000540828 NISCHQ9Y2I1 1504 aa51.95■■■■■ 5.91
PTMS-205ENST00000540828 CCDC180Q9P1Z9 1646 aa46.28■■■■■ 5
PTMS-205ENST00000540828 ABCC9O60706 1549 aa45.76■■■■■ 4.92
PTMS-205ENST00000540828 RB1CC1Q8TDY2 1594 aa43.8■■■■■ 4.6
PTMS-205ENST00000540828 NACADO15069 1562 aa43.68■■■■■ 4.58
PTMS-205ENST00000540828 DCAF8L2P0C7V8 631 aa43.63■■■■■ 4.57
PTMS-205ENST00000540828 MYO15BQ96JP2 1530 aa43.31■■■■■ 4.52
PTMS-205ENST00000540828 ZCCHC6Q5VYS8 1495 aaKnown RBP43.15■■■■■ 4.5
PTMS-205ENST00000540828 DCAF1Q9Y4B6 1507 aa42.96■■■■■ 4.47
PTMS-205ENST00000540828 PABPN1Q86U42 306 aaKnown RBP eCLIP42.76■■■■■ 4.441e-9■□□□□ 8.1
PTMS-205ENST00000540828 UNC13AQ9UPW8 1703 aa42.75■■■■■ 4.43
PTMS-205ENST00000540828 BICRAQ9NZM4 1560 aa42.52■■■■■ 4.4
PTMS-205ENST00000540828 DNAJC5BQ9UF47 199 aa42.5■■■■■ 4.39
PTMS-205ENST00000540828 SCRIBQ14160 1630 aa42.2■■■■■ 4.35
PTMS-205ENST00000540828 SHROOM4Q9ULL8 1493 aa42.02■■■■■ 4.32
PTMS-205ENST00000540828 EIF4G1Q04637 1599 aaKnown RBP41.41■■■■■ 4.22
PTMS-205ENST00000540828 CC2D2AQ9P2K1 1620 aa41.35■■■■■ 4.21
PTMS-205ENST00000540828 CECR2Q9BXF3 1484 aa41.17■■■■■ 4.18
PTMS-205ENST00000540828 NCAPD3P42695 1498 aa40.37■■■■■ 4.05
PTMS-205ENST00000540828 SMARCA4P51532 1647 aa40.34■■■■■ 4.05
PTMS-205ENST00000540828 ATAD2BQ9ULI0 1458 aa40.3■■■■■ 4.04
PTMS-205ENST00000540828 BAZ1AQ9NRL2 1556 aaPredicted RBP40.26■■■■■ 4.04
PTMS-205ENST00000540828 SMARCA2P51531 1590 aa40.18■■■■■ 4.02
PTMS-205ENST00000540828 HMGXB3Q12766 1538 aa40.05■■■■■ 4
PTMS-205ENST00000540828 MROH2BQ7Z745 1585 aa40.03■■■■■ 4
PTMS-205ENST00000540828 PEG3Q9GZU2 1588 aa39.98■■■■□ 3.99
PTMS-205ENST00000540828 BAZ1BQ9UIG0 1483 aaKnown RBP39.9■■■■□ 3.98
PTMS-205ENST00000540828 WIZO95785 1651 aa39.54■■■■□ 3.92
PTMS-205ENST00000540828 NESP48681 1621 aa39.48■■■■□ 3.91
PTMS-205ENST00000540828 ERCC6Q03468 1493 aa39.45■■■■□ 3.91
PTMS-205ENST00000540828 RSF1Q96T23 1441 aaPredicted RBP39.45■■■■□ 3.91
PTMS-205ENST00000540828 LAMC3Q9Y6N6 1575 aa39.29■■■■□ 3.88
PTMS-205ENST00000540828 CUX2O14529 1486 aa39.2■■■■□ 3.87
PTMS-205ENST00000540828 CADPSQ9ULU8 1353 aa39.17■■■■□ 3.86
PTMS-205ENST00000540828 TOP2AP11388 1531 aaKnown RBP39.09■■■■□ 3.85
PTMS-205ENST00000540828 PDS5BQ9NTI5 1447 aa39.09■■■■□ 3.85
PTMS-205ENST00000540828 KIF21AQ7Z4S6 1674 aa38.92■■■■□ 3.82
PTMS-205ENST00000540828 THOC2Q8NI27 1593 aaKnown RBP38.91■■■■□ 3.82
PTMS-205ENST00000540828 CFTRP13569 1480 aa38.82■■■■□ 3.81
PTMS-205ENST00000540828 CCDC88BA6NC98 1476 aa38.7■■■■□ 3.79
PTMS-205ENST00000540828 MRC2Q9UBG0 1479 aa38.68■■■■□ 3.78
PTMS-205ENST00000540828 FANCD2Q9BXW9 1451 aa38.67■■■■□ 3.78
PTMS-205ENST00000540828 CEP164Q9UPV0 1460 aa38.63■■■■□ 3.77
PTMS-205ENST00000540828 DNAJC5Q9H3Z4 198 aa38.6■■■■□ 3.77
PTMS-205ENST00000540828 WDR62O43379 1518 aa38.55■■■■□ 3.76
PTMS-205ENST00000540828 PRDM2Q13029 1718 aa38.35■■■■□ 3.73
PTMS-205ENST00000540828 URB2Q14146 1524 aaKnown RBP38.32■■■■□ 3.72
PTMS-205ENST00000540828 SUPT5HO00267 1087 aaKnown RBP38.15■■■■□ 3.7
PTMS-205ENST00000540828 TOPBP1Q92547 1522 aa38.01■■■■□ 3.67
PTMS-205ENST00000540828 ABCC8Q09428 1581 aa38■■■■□ 3.67
PTMS-205ENST00000540828 DNMBPQ6XZF7 1577 aa37.89■■■■□ 3.66
PTMS-205ENST00000540828 IFT140Q96RY7 1462 aa37.88■■■■□ 3.65
PTMS-205ENST00000540828 ZNF608Q9ULD9 1512 aaPredicted RBP37.75■■■■□ 3.63
PTMS-205ENST00000540828 POLA1P09884 1462 aaPredicted RBP37.65■■■■□ 3.62
PTMS-205ENST00000540828 TARBP1Q13395 1621 aaKnown RBP37.61■■■■□ 3.61
PTMS-205ENST00000540828 OSCARQ8IYS5 282 aa37.6■■■■□ 3.61
PTMS-205ENST00000540828 CUX1P39880 1505 aa37.56■■■■□ 3.6
PTMS-205ENST00000540828 SOGA1O94964 1423 aa37.54■■■■□ 3.6
PTMS-205ENST00000540828 RAD54L2Q9Y4B4 1467 aa37.52■■■■□ 3.6
PTMS-205ENST00000540828 AQRO60306 1485 aaKnown RBP eCLIP37.51■■■■□ 3.591e-7■■■■□ 19.3
PTMS-205ENST00000540828 EIF4G3O43432 1585 aaKnown RBP37.5■■■■□ 3.59
PTMS-205ENST00000540828 FGD5Q6ZNL6 1462 aa37.49■■■■□ 3.59
PTMS-205ENST00000540828 TDRD9Q8NDG6 1382 aaKnown RBP37.39■■■■□ 3.58
PTMS-205ENST00000540828 WDR97A6NE52 1622 aa37.26■■■■□ 3.56
PTMS-205ENST00000540828 WRNQ14191 1432 aaPredicted RBP eCLIP37.18■■■■□ 3.547e-8■■■■■ 32.7
PTMS-205ENST00000540828 FBLN2P98095 1184 aa37.15■■■■□ 3.54
PTMS-205ENST00000540828 ABCA10Q8WWZ4 1543 aa37.13■■■■□ 3.53
PTMS-205ENST00000540828 GRIN2BQ13224 1484 aa37.12■■■■□ 3.53
PTMS-205ENST00000540828 TOP2BQ02880 1626 aa37.1■■■■□ 3.53
PTMS-205ENST00000540828 SNAPC4Q5SXM2 1469 aa37.1■■■■□ 3.53
PTMS-205ENST00000540828 CHD1O14646 1710 aa37.1■■■■□ 3.53
PTMS-205ENST00000540828 BIVM-ERCC5R4GMW8 1640 aa37.09■■■■□ 3.53
PTMS-205ENST00000540828 TRIM41Q8WV44 630 aa37.08■■■■□ 3.53
PTMS-205ENST00000540828 GAPVD1Q14C86 1478 aa37.07■■■■□ 3.52
PTMS-205ENST00000540828 SYNJ1O43426 1573 aa37.06■■■■□ 3.52
PTMS-205ENST00000540828 MAGI1Q96QZ7 1491 aaPredicted RBP37.05■■■■□ 3.52
PTMS-205ENST00000540828 CHMP7Q8WUX9 453 aaPredicted RBP37■■■■□ 3.51
PTMS-205ENST00000540828 ABCA5Q8WWZ7 1642 aa36.96■■■■□ 3.51
PTMS-205ENST00000540828 RIMBP3CA6NJZ7 1639 aa36.92■■■■□ 3.5
PTMS-205ENST00000540828 RIMBP3BA6NNM3 1639 aa36.92■■■■□ 3.5
PTMS-205ENST00000540828 RIMBP3Q9UFD9 1639 aa36.92■■■■□ 3.5
PTMS-205ENST00000540828 PBRM1Q86U86 1689 aa36.91■■■■□ 3.5
PTMS-205ENST00000540828 SYNJ2O15056 1496 aa36.91■■■■□ 3.5
PTMS-205ENST00000540828 ARHGEF11O15085 1522 aa36.89■■■■□ 3.5
PTMS-205ENST00000540828 CLASP1Q7Z460 1538 aa36.75■■■■□ 3.47
PTMS-205ENST00000540828 CYB5RLQ6IPT4 315 aa36.66■■■■□ 3.46
PTMS-205ENST00000540828 ERICH3Q5RHP9 1530 aa36.65■■■■□ 3.46
PTMS-205ENST00000540828 FHAD1B1AJZ9 1412 aa36.64■■■■□ 3.46
PTMS-205ENST00000540828 ADAMTS12P58397 1594 aa36.63■■■■□ 3.45
PTMS-205ENST00000540828 GRIN2AQ12879 1464 aa36.62■■■■□ 3.45
PTMS-205ENST00000540828 ARAP1Q96P48 1450 aa36.57■■■■□ 3.45
PTMS-205ENST00000540828 NUP160Q12769 1436 aa36.51■■■■□ 3.43
PTMS-205ENST00000540828 KIF27Q86VH2 1401 aa36.44■■■■□ 3.42
PTMS-205ENST00000540828 CEP170Q5SW79 1584 aa36.44■■■■□ 3.42
PTMS-205ENST00000540828 IGF1RP08069 1367 aa36.41■■■■□ 3.42
PTMS-205ENST00000540828 SHROOM2Q13796 1616 aa36.23■■■■□ 3.39
PTMS-205ENST00000540828 ERCC6L2Q5T890 1561 aa36.22■■■■□ 3.39
PTMS-205ENST00000540828 JPH4Q96JJ6 628 aa36.2■■■■□ 3.39
PTMS-205ENST00000540828 CUL7Q14999 1698 aa36.19■■■■□ 3.38
PTMS-205ENST00000540828 CARMIL1Q5VZK9 1371 aa36.16■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms