RNA–Protein interactions for RNA: ENST00000539945.5

MDH1-215, Transcript of malate dehydrogenase 1, humanhuman

TSL 2 BASIC

Gene MDH1, Length 1,443 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDH1-215ENST00000539945 AEBP2Q6ZN18 517 aaPredicted RBP30.11■■■□□ 2.41
MDH1-215ENST00000539945 CHIC1Q5VXU3 224 aa28.41■■■□□ 2.14
MDH1-215ENST00000539945 SENP3Q9H4L4 574 aaPredicted RBP26■■□□□ 1.75
MDH1-215ENST00000539945 PHF23Q9BUL5 403 aaPredicted RBP25.49■■□□□ 1.67
MDH1-215ENST00000539945 FOXD1Q16676 465 aa24.12■■□□□ 1.45
MDH1-215ENST00000539945 POTEDQ86YR6 584 aa22.97■■□□□ 1.27
MDH1-215ENST00000539945 MSH5O43196 834 aa22.94■■□□□ 1.26
MDH1-215ENST00000539945 PIAS4Q8N2W9 510 aaPredicted RBP22.54■■□□□ 1.2
MDH1-215ENST00000539945 PLPPR3Q6T4P5 718 aa22.52■■□□□ 1.2
MDH1-215ENST00000539945 PPP6R1Q9UPN7 881 aa22.13■■□□□ 1.13
MDH1-215ENST00000539945 ADRA2BP18089 450 aa22.08■■□□□ 1.13
MDH1-215ENST00000539945 NISCHQ9Y2I1 1504 aa21.81■■□□□ 1.08
MDH1-215ENST00000539945 SCAF1Q9H7N4 1312 aaKnown RBP20.48■□□□□ 0.87
MDH1-215ENST00000539945 DMRT2Q9Y5R5 561 aa20.48■□□□□ 0.87
MDH1-215ENST00000539945 MAPK8IP2Q13387 824 aaPredicted RBP20.37■□□□□ 0.85
MDH1-215ENST00000539945 CACNB1Q02641 598 aaPredicted RBP19.9■□□□□ 0.78
MDH1-215ENST00000539945 DCAF8L1A6NGE4 600 aa19.72■□□□□ 0.75
MDH1-215ENST00000539945 PPP4R3CPQ6ZMV5 832 aa19.6■□□□□ 0.73
MDH1-215ENST00000539945 HOXD11P31277 338 aaPredicted RBP19.55■□□□□ 0.72
MDH1-215ENST00000539945 RNF39Q9H2S5 420 aa19.42■□□□□ 0.7
MDH1-215ENST00000539945 CNKSR2Q8WXI2 1034 aa19.41■□□□□ 0.7
MDH1-215ENST00000539945 RNF216Q9NWF9 866 aaPredicted RBP19.34■□□□□ 0.69
MDH1-215ENST00000539945 C1QBPQ07021 282 aaKnown RBP19.21■□□□□ 0.67
MDH1-215ENST00000539945 DNAJC5BQ9UF47 199 aa19.07■□□□□ 0.64
MDH1-215ENST00000539945 CCDC180Q9P1Z9 1646 aa19.02■□□□□ 0.63
MDH1-215ENST00000539945 NCBP3Q53F19 620 aaKnown RBP18.88■□□□□ 0.61
MDH1-215ENST00000539945 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.7■□□□□ 0.583e-7■□□□□ 11.3
MDH1-215ENST00000539945 NPM3O75607 178 aaKnown RBP18.41■□□□□ 0.54
MDH1-215ENST00000539945 ZCCHC6Q5VYS8 1495 aaKnown RBP18.33■□□□□ 0.52
MDH1-215ENST00000539945 U3KPZ7 1027 aaPredicted RBP18.15■□□□□ 0.5
MDH1-215ENST00000539945 CAPN15O75808 1086 aa18.1■□□□□ 0.49
MDH1-215ENST00000539945 DCAF1Q9Y4B6 1507 aa18.07■□□□□ 0.48
MDH1-215ENST00000539945 DSG3P32926 999 aa18.01■□□□□ 0.47
MDH1-215ENST00000539945 SPINK5Q9NQ38 1064 aaPredicted RBP17.98■□□□□ 0.47
MDH1-215ENST00000539945 POTEHQ6S545 545 aa17.97■□□□□ 0.47
MDH1-215ENST00000539945 DCAF8L2P0C7V8 631 aa17.95■□□□□ 0.46
MDH1-215ENST00000539945 ABCC9O60706 1549 aa17.91■□□□□ 0.46
MDH1-215ENST00000539945 APLP2Q06481 763 aa17.89■□□□□ 0.46
MDH1-215ENST00000539945 MYO15BQ96JP2 1530 aa17.86■□□□□ 0.45
MDH1-215ENST00000539945 SHROOM4Q9ULL8 1493 aa17.74■□□□□ 0.43
MDH1-215ENST00000539945 ZNF219Q9P2Y4 722 aaPredicted RBP17.72■□□□□ 0.43
MDH1-215ENST00000539945 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.72■□□□□ 0.43
MDH1-215ENST00000539945 HNRNPUL2Q1KMD3 747 aaKnown RBP17.72■□□□□ 0.43
MDH1-215ENST00000539945 NACADO15069 1562 aa17.71■□□□□ 0.43
MDH1-215ENST00000539945 TRHP20396 242 aaPredicted RBP17.67■□□□□ 0.42
MDH1-215ENST00000539945 SLC4A2P04920 1241 aa17.64■□□□□ 0.41
MDH1-215ENST00000539945 KCNA4P22459 653 aa17.63■□□□□ 0.41
MDH1-215ENST00000539945 ABCB7O75027 752 aa17.55■□□□□ 0.4
MDH1-215ENST00000539945 RB1CC1Q8TDY2 1594 aa17.54■□□□□ 0.4
MDH1-215ENST00000539945 SAMD1Q6SPF0 538 aaPredicted RBP17.53■□□□□ 0.4
MDH1-215ENST00000539945 SCRIBQ14160 1630 aa17.44■□□□□ 0.38
MDH1-215ENST00000539945 RBM42Q9BTD8 480 aaKnown RBP17.4■□□□□ 0.38
MDH1-215ENST00000539945 MYCNP04198 464 aaPredicted RBP17.16■□□□□ 0.34
MDH1-215ENST00000539945 UNC13AQ9UPW8 1703 aa17.15■□□□□ 0.34
MDH1-215ENST00000539945 SUPT5HO00267 1087 aaKnown RBP17.11■□□□□ 0.33
MDH1-215ENST00000539945 POLA2Q14181 598 aa17.07■□□□□ 0.32
MDH1-215ENST00000539945 CHRDL2Q6WN34 429 aa17.05■□□□□ 0.32
MDH1-215ENST00000539945 BICRAQ9NZM4 1560 aa17.01■□□□□ 0.31
MDH1-215ENST00000539945 RSF1Q96T23 1441 aaPredicted RBP16.93■□□□□ 0.3
MDH1-215ENST00000539945 CECR2Q9BXF3 1484 aa16.93■□□□□ 0.3
MDH1-215ENST00000539945 PABPN1Q86U42 306 aaKnown RBP eCLIP16.89■□□□□ 0.29
MDH1-215ENST00000539945 ZBTB12Q9Y330 459 aaPredicted RBP16.89■□□□□ 0.29
MDH1-215ENST00000539945 MROH2BQ7Z745 1585 aa16.84■□□□□ 0.29
MDH1-215ENST00000539945 BAZ1AQ9NRL2 1556 aaPredicted RBP16.84■□□□□ 0.29
MDH1-215ENST00000539945 AKT1S1Q96B36 256 aa16.82■□□□□ 0.28
MDH1-215ENST00000539945 SMARCA4P51532 1647 aa16.75■□□□□ 0.27
MDH1-215ENST00000539945 FOXD4L1Q9NU39 408 aa16.71■□□□□ 0.27
MDH1-215ENST00000539945 WIZO95785 1651 aa16.69■□□□□ 0.26
MDH1-215ENST00000539945 SLC4A1APQ9BWU0 796 aaKnown RBP16.66■□□□□ 0.26
MDH1-215ENST00000539945 SP7Q8TDD2 431 aaPredicted RBP16.65■□□□□ 0.26
MDH1-215ENST00000539945 REM2Q8IYK8 340 aaPredicted RBP16.59■□□□□ 0.25
MDH1-215ENST00000539945 PEG3Q9GZU2 1588 aa16.58■□□□□ 0.24
MDH1-215ENST00000539945 ATF5Q9Y2D1 282 aaPredicted RBP16.57■□□□□ 0.24
MDH1-215ENST00000539945 TOP2AP11388 1531 aaKnown RBP16.54■□□□□ 0.24
MDH1-215ENST00000539945 OSCARQ8IYS5 282 aa16.53■□□□□ 0.24
MDH1-215ENST00000539945 PIP4P2Q8N4L2 257 aa16.51■□□□□ 0.23
MDH1-215ENST00000539945 SMARCA2P51531 1590 aa16.48■□□□□ 0.23
MDH1-215ENST00000539945 EIF4G1Q04637 1599 aaKnown RBP16.48■□□□□ 0.23
MDH1-215ENST00000539945 ATAD2BQ9ULI0 1458 aa16.47■□□□□ 0.23
MDH1-215ENST00000539945 HAX1O00165 279 aa16.4■□□□□ 0.22
MDH1-215ENST00000539945 PITPNM1O00562 1244 aa16.4■□□□□ 0.22
MDH1-215ENST00000539945 BAZ1BQ9UIG0 1483 aaKnown RBP16.38■□□□□ 0.21
MDH1-215ENST00000539945 CCDC88BA6NC98 1476 aa16.37■□□□□ 0.21
MDH1-215ENST00000539945 FXR2P51116 673 aaKnown RBP eCLIP16.36■□□□□ 0.216e-6■■■■□ 22.2
MDH1-215ENST00000539945 NCAPD3P42695 1498 aa16.35■□□□□ 0.21
MDH1-215ENST00000539945 HMGXB3Q12766 1538 aa16.32■□□□□ 0.2
MDH1-215ENST00000539945 ATXN8OSP0DMR3 200 aa16.3■□□□□ 0.2
MDH1-215ENST00000539945 FBLN2P98095 1184 aa16.25■□□□□ 0.19
MDH1-215ENST00000539945 SPDYE2BA6NHP3 402 aa16.24■□□□□ 0.19
MDH1-215ENST00000539945 SPDYE6P0CI01 402 aa16.24■□□□□ 0.19
MDH1-215ENST00000539945 SPDYE2Q495Y8 402 aa16.24■□□□□ 0.19
MDH1-215ENST00000539945 CC2D2AQ9P2K1 1620 aa16.22■□□□□ 0.19
MDH1-215ENST00000539945 ZBTB22O15209 634 aa16.11■□□□□ 0.17
MDH1-215ENST00000539945 TRIM41Q8WV44 630 aa16.11■□□□□ 0.17
MDH1-215ENST00000539945 SPDYE1Q8NFV5 336 aaPredicted RBP16.09■□□□□ 0.17
MDH1-215ENST00000539945 PRKAR2AP13861 404 aaKnown RBP16.02■□□□□ 0.15
MDH1-215ENST00000539945 CLEC11AQ9Y240 323 aa16.02■□□□□ 0.15
MDH1-215ENST00000539945 ABCC8Q09428 1581 aa16■□□□□ 0.15
MDH1-215ENST00000539945 CFTRP13569 1480 aa15.99■□□□□ 0.15
MDH1-215ENST00000539945 EVX2Q03828 476 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms