RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 NISCHQ9Y2I1 1504 aa38.25■■■■□ 3.71
PCDHB17P-201ENST00000539533 CCDC180Q9P1Z9 1646 aa33.2■■■□□ 2.91
PCDHB17P-201ENST00000539533 ZCCHC6Q5VYS8 1495 aaKnown RBP32.13■■■□□ 2.73
PCDHB17P-201ENST00000539533 DCAF8L2P0C7V8 631 aa31.77■■■□□ 2.68
PCDHB17P-201ENST00000539533 ABCC9O60706 1549 aa31.53■■■□□ 2.64
PCDHB17P-201ENST00000539533 DCAF1Q9Y4B6 1507 aa31.53■■■□□ 2.64
PCDHB17P-201ENST00000539533 SHROOM4Q9ULL8 1493 aa31.44■■■□□ 2.62
PCDHB17P-201ENST00000539533 MYO15BQ96JP2 1530 aa31.1■■■□□ 2.57
PCDHB17P-201ENST00000539533 NACADO15069 1562 aa30.94■■■□□ 2.54
PCDHB17P-201ENST00000539533 SCRIBQ14160 1630 aa30.7■■■□□ 2.5
PCDHB17P-201ENST00000539533 RB1CC1Q8TDY2 1594 aa30.68■■■□□ 2.5
PCDHB17P-201ENST00000539533 SUPT5HO00267 1087 aaKnown RBP30.29■■■□□ 2.44
PCDHB17P-201ENST00000539533 UNC13AQ9UPW8 1703 aa30.12■■■□□ 2.41
PCDHB17P-201ENST00000539533 PABPN1Q86U42 306 aaKnown RBP eCLIP29.82■■■□□ 2.36
PCDHB17P-201ENST00000539533 BICRAQ9NZM4 1560 aa29.82■■■□□ 2.36
PCDHB17P-201ENST00000539533 CECR2Q9BXF3 1484 aa29.81■■■□□ 2.36
PCDHB17P-201ENST00000539533 RSF1Q96T23 1441 aaPredicted RBP29.75■■■□□ 2.35
PCDHB17P-201ENST00000539533 MROH2BQ7Z745 1585 aa29.6■■■□□ 2.33
PCDHB17P-201ENST00000539533 BAZ1AQ9NRL2 1556 aaPredicted RBP29.49■■■□□ 2.31
PCDHB17P-201ENST00000539533 SMARCA4P51532 1647 aa29.38■■■□□ 2.29
PCDHB17P-201ENST00000539533 WIZO95785 1651 aa29.37■■■□□ 2.29
PCDHB17P-201ENST00000539533 TOP2AP11388 1531 aaKnown RBP28.99■■■□□ 2.23
PCDHB17P-201ENST00000539533 CHIC1Q5VXU3 224 aa28.98■■■□□ 2.23
PCDHB17P-201ENST00000539533 PEG3Q9GZU2 1588 aa28.96■■■□□ 2.23
PCDHB17P-201ENST00000539533 ATAD2BQ9ULI0 1458 aa28.9■■■□□ 2.22
PCDHB17P-201ENST00000539533 EIF4G1Q04637 1599 aaKnown RBP28.9■■■□□ 2.22
PCDHB17P-201ENST00000539533 SMARCA2P51531 1590 aa28.82■■■□□ 2.2
PCDHB17P-201ENST00000539533 CCDC88BA6NC98 1476 aa28.77■■■□□ 2.2
PCDHB17P-201ENST00000539533 BAZ1BQ9UIG0 1483 aaKnown RBP28.73■■■□□ 2.19
PCDHB17P-201ENST00000539533 NCAPD3P42695 1498 aa28.6■■■□□ 2.17
PCDHB17P-201ENST00000539533 HMGXB3Q12766 1538 aa28.52■■■□□ 2.16
PCDHB17P-201ENST00000539533 CC2D2AQ9P2K1 1620 aa28.47■■■□□ 2.15
PCDHB17P-201ENST00000539533 TRIM41Q8WV44 630 aa28.41■■■□□ 2.14
PCDHB17P-201ENST00000539533 ABCC8Q09428 1581 aa28.23■■■□□ 2.11
PCDHB17P-201ENST00000539533 CFTRP13569 1480 aa28.01■■■□□ 2.07
PCDHB17P-201ENST00000539533 FAM9AQ8IZU1 332 aaPredicted RBP27.99■■■□□ 2.07
PCDHB17P-201ENST00000539533 WRNQ14191 1432 aaPredicted RBP eCLIP27.98■■■□□ 2.07
PCDHB17P-201ENST00000539533 LOC105371045A0A1W2PR82 267 aa27.97■■■□□ 2.07
PCDHB17P-201ENST00000539533 DNAJC5BQ9UF47 199 aa27.92■■■□□ 2.06
PCDHB17P-201ENST00000539533 CADPSQ9ULU8 1353 aa27.91■■■□□ 2.06
PCDHB17P-201ENST00000539533 SYNJ1O43426 1573 aa27.87■■■□□ 2.05
PCDHB17P-201ENST00000539533 PRDM2Q13029 1718 aa27.78■■■□□ 2.04
PCDHB17P-201ENST00000539533 SOGA1O94964 1423 aa27.73■■■□□ 2.03
PCDHB17P-201ENST00000539533 NESP48681 1621 aa27.72■■■□□ 2.03
PCDHB17P-201ENST00000539533 TOP2BQ02880 1626 aa27.7■■■□□ 2.02
PCDHB17P-201ENST00000539533 EHMT2Q96KQ7 1210 aa27.67■■■□□ 2.02
PCDHB17P-201ENST00000539533 CUX1P39880 1505 aa27.66■■■□□ 2.02
PCDHB17P-201ENST00000539533 BIVM-ERCC5R4GMW8 1640 aa27.65■■■□□ 2.02
PCDHB17P-201ENST00000539533 RUSC2Q8N2Y8 1516 aa27.64■■■□□ 2.02
PCDHB17P-201ENST00000539533 FANCD2Q9BXW9 1451 aa27.61■■■□□ 2.01
PCDHB17P-201ENST00000539533 LAMC3Q9Y6N6 1575 aa27.58■■■□□ 2.01
PCDHB17P-201ENST00000539533 EEA1Q15075 1411 aa27.53■■■□□ 2
PCDHB17P-201ENST00000539533 CSRNP3Q8WYN3 585 aa27.51■■□□□ 1.99
PCDHB17P-201ENST00000539533 HRCP23327 699 aa27.42■■□□□ 1.98
PCDHB17P-201ENST00000539533 PDS5BQ9NTI5 1447 aa27.4■■□□□ 1.98
PCDHB17P-201ENST00000539533 CEP164Q9UPV0 1460 aa27.4■■□□□ 1.98
PCDHB17P-201ENST00000539533 FGD5Q6ZNL6 1462 aa27.34■■□□□ 1.97
PCDHB17P-201ENST00000539533 DNMBPQ6XZF7 1577 aa27.32■■□□□ 1.96
PCDHB17P-201ENST00000539533 KIF21AQ7Z4S6 1674 aa27.31■■□□□ 1.96
PCDHB17P-201ENST00000539533 TOPBP1Q92547 1522 aa27.31■■□□□ 1.96
PCDHB17P-201ENST00000539533 URB2Q14146 1524 aaKnown RBP27.28■■□□□ 1.96
PCDHB17P-201ENST00000539533 KIF27Q86VH2 1401 aa27.24■■□□□ 1.95
PCDHB17P-201ENST00000539533 GOLGA3Q08378 1498 aa27.21■■□□□ 1.95
PCDHB17P-201ENST00000539533 UBTFP17480 764 aaKnown RBP27.21■■□□□ 1.95
PCDHB17P-201ENST00000539533 POLA1P09884 1462 aaPredicted RBP27.2■■□□□ 1.95
PCDHB17P-201ENST00000539533 KIF21BO75037 1637 aa27.19■■□□□ 1.94
PCDHB17P-201ENST00000539533 CUX2O14529 1486 aa27.19■■□□□ 1.94
PCDHB17P-201ENST00000539533 RAD54L2Q9Y4B4 1467 aa27.17■■□□□ 1.94
PCDHB17P-201ENST00000539533 TNIKQ9UKE5 1360 aa27.16■■□□□ 1.94
PCDHB17P-201ENST00000539533 PCGF6Q9BYE7 350 aa27.14■■□□□ 1.94
PCDHB17P-201ENST00000539533 RAPGEF2Q9Y4G8 1499 aa27.13■■□□□ 1.93
PCDHB17P-201ENST00000539533 PRXQ9BXM0 1461 aa27.09■■□□□ 1.93
PCDHB17P-201ENST00000539533 ABCA10Q8WWZ4 1543 aa27.06■■□□□ 1.92
PCDHB17P-201ENST00000539533 CEP162Q5TB80 1403 aa27.06■■□□□ 1.92
PCDHB17P-201ENST00000539533 IGF1RP08069 1367 aa27.05■■□□□ 1.92
PCDHB17P-201ENST00000539533 MRC2Q9UBG0 1479 aa27.04■■□□□ 1.92
PCDHB17P-201ENST00000539533 ERICH3Q5RHP9 1530 aa26.99■■□□□ 1.91
PCDHB17P-201ENST00000539533 ERCC6Q03468 1493 aa26.98■■□□□ 1.91
PCDHB17P-201ENST00000539533 WDR97A6NE52 1622 aa26.94■■□□□ 1.9
PCDHB17P-201ENST00000539533 TDRD9Q8NDG6 1382 aaKnown RBP26.92■■□□□ 1.9
PCDHB17P-201ENST00000539533 CARMIL1Q5VZK9 1371 aa26.91■■□□□ 1.9
PCDHB17P-201ENST00000539533 WDR62O43379 1518 aa26.89■■□□□ 1.9
PCDHB17P-201ENST00000539533 TARBP1Q13395 1621 aaKnown RBP26.88■■□□□ 1.89
PCDHB17P-201ENST00000539533 RANGAP1P46060 587 aaPredicted RBP26.85■■□□□ 1.89
PCDHB17P-201ENST00000539533 CLIP1P30622 1438 aa26.83■■□□□ 1.89
PCDHB17P-201ENST00000539533 ABCA5Q8WWZ7 1642 aa26.82■■□□□ 1.88
PCDHB17P-201ENST00000539533 GAPVD1Q14C86 1478 aa26.81■■□□□ 1.88
PCDHB17P-201ENST00000539533 THOC2Q8NI27 1593 aaKnown RBP26.8■■□□□ 1.88
PCDHB17P-201ENST00000539533 PPARGC1BQ86YN6 1023 aaKnown RBP26.75■■□□□ 1.87
PCDHB17P-201ENST00000539533 AQRO60306 1485 aaKnown RBP eCLIP26.72■■□□□ 1.87
PCDHB17P-201ENST00000539533 IFT140Q96RY7 1462 aa26.72■■□□□ 1.87
PCDHB17P-201ENST00000539533 CUL7Q14999 1698 aa26.72■■□□□ 1.87
PCDHB17P-201ENST00000539533 ZNF608Q9ULD9 1512 aaPredicted RBP26.67■■□□□ 1.86
PCDHB17P-201ENST00000539533 TRIM26Q12899 539 aaPredicted RBP26.63■■□□□ 1.85
PCDHB17P-201ENST00000539533 PBRM1Q86U86 1689 aa26.61■■□□□ 1.85
PCDHB17P-201ENST00000539533 VPS8Q8N3P4 1428 aa26.58■■□□□ 1.85
PCDHB17P-201ENST00000539533 GRIN2BQ13224 1484 aa26.56■■□□□ 1.84
PCDHB17P-201ENST00000539533 ARAP1Q96P48 1450 aa26.55■■□□□ 1.84
PCDHB17P-201ENST00000539533 ARHGAP35Q9NRY4 1499 aa26.54■■□□□ 1.84
PCDHB17P-201ENST00000539533 EIF4G3O43432 1585 aaKnown RBP26.51■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms