RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 NISCHQ9Y2I1 1504 aa32■■■□□ 2.71
CHFR-216ENST00000538235 CCDC180Q9P1Z9 1646 aa28.43■■■□□ 2.14
CHFR-216ENST00000538235 ABCC9O60706 1549 aa27.57■■■□□ 2
CHFR-216ENST00000538235 ZCCHC6Q5VYS8 1495 aaKnown RBP26.75■■□□□ 1.87
CHFR-216ENST00000538235 NACADO15069 1562 aa26.55■■□□□ 1.84
CHFR-216ENST00000538235 RB1CC1Q8TDY2 1594 aa26.54■■□□□ 1.84
CHFR-216ENST00000538235 MYO15BQ96JP2 1530 aa26.45■■□□□ 1.83
CHFR-216ENST00000538235 DCAF1Q9Y4B6 1507 aa26.44■■□□□ 1.82
CHFR-216ENST00000538235 DCAF8L2P0C7V8 631 aa26.38■■□□□ 1.81
CHFR-216ENST00000538235 UNC13AQ9UPW8 1703 aa26.28■■□□□ 1.8
CHFR-216ENST00000538235 SCRIBQ14160 1630 aa25.99■■□□□ 1.75
CHFR-216ENST00000538235 BICRAQ9NZM4 1560 aa25.95■■□□□ 1.74
CHFR-216ENST00000538235 PABPN1Q86U42 306 aaKnown RBP eCLIP25.71■■□□□ 1.71
CHFR-216ENST00000538235 SHROOM4Q9ULL8 1493 aa25.42■■□□□ 1.66
CHFR-216ENST00000538235 DNAJC5BQ9UF47 199 aa25.15■■□□□ 1.62
CHFR-216ENST00000538235 EIF4G1Q04637 1599 aaKnown RBP25.14■■□□□ 1.61
CHFR-216ENST00000538235 CC2D2AQ9P2K1 1620 aa25.01■■□□□ 1.59
CHFR-216ENST00000538235 CECR2Q9BXF3 1484 aa24.99■■□□□ 1.59
CHFR-216ENST00000538235 SMARCA4P51532 1647 aa24.86■■□□□ 1.57
CHFR-216ENST00000538235 MROH2BQ7Z745 1585 aa24.74■■□□□ 1.55
CHFR-216ENST00000538235 BAZ1AQ9NRL2 1556 aaPredicted RBP24.74■■□□□ 1.55
CHFR-216ENST00000538235 PEG3Q9GZU2 1588 aa24.59■■□□□ 1.53
CHFR-216ENST00000538235 ATAD2BQ9ULI0 1458 aa24.58■■□□□ 1.53
CHFR-216ENST00000538235 WIZO95785 1651 aa24.54■■□□□ 1.52
CHFR-216ENST00000538235 SMARCA2P51531 1590 aa24.5■■□□□ 1.51
CHFR-216ENST00000538235 NCAPD3P42695 1498 aa24.48■■□□□ 1.51
CHFR-216ENST00000538235 HMGXB3Q12766 1538 aa24.46■■□□□ 1.51
CHFR-216ENST00000538235 RSF1Q96T23 1441 aaPredicted RBP24.44■■□□□ 1.5
CHFR-216ENST00000538235 BAZ1BQ9UIG0 1483 aaKnown RBP24.35■■□□□ 1.49
CHFR-216ENST00000538235 TOP2AP11388 1531 aaKnown RBP24.19■■□□□ 1.46
CHFR-216ENST00000538235 NESP48681 1621 aa23.99■■□□□ 1.43
CHFR-216ENST00000538235 CCDC88BA6NC98 1476 aa23.87■■□□□ 1.41
CHFR-216ENST00000538235 LAMC3Q9Y6N6 1575 aa23.85■■□□□ 1.41
CHFR-216ENST00000538235 SUPT5HO00267 1087 aaKnown RBP23.81■■□□□ 1.4
CHFR-216ENST00000538235 KIF21AQ7Z4S6 1674 aa23.8■■□□□ 1.4
CHFR-216ENST00000538235 PRDM2Q13029 1718 aa23.76■■□□□ 1.39
CHFR-216ENST00000538235 CADPSQ9ULU8 1353 aa23.73■■□□□ 1.39
CHFR-216ENST00000538235 CFTRP13569 1480 aa23.71■■□□□ 1.39
CHFR-216ENST00000538235 THOC2Q8NI27 1593 aaKnown RBP23.65■■□□□ 1.38
CHFR-216ENST00000538235 ERCC6Q03468 1493 aa23.6■■□□□ 1.37
CHFR-216ENST00000538235 FANCD2Q9BXW9 1451 aa23.53■■□□□ 1.36
CHFR-216ENST00000538235 PDS5BQ9NTI5 1447 aa23.52■■□□□ 1.36
CHFR-216ENST00000538235 CEP164Q9UPV0 1460 aa23.47■■□□□ 1.35
CHFR-216ENST00000538235 MRC2Q9UBG0 1479 aa23.42■■□□□ 1.34
CHFR-216ENST00000538235 WDR62O43379 1518 aa23.41■■□□□ 1.34
CHFR-216ENST00000538235 URB2Q14146 1524 aaKnown RBP23.39■■□□□ 1.34
CHFR-216ENST00000538235 CUX2O14529 1486 aa23.32■■□□□ 1.32
CHFR-216ENST00000538235 TOPBP1Q92547 1522 aa23.23■■□□□ 1.31
CHFR-216ENST00000538235 DNMBPQ6XZF7 1577 aa23.23■■□□□ 1.31
CHFR-216ENST00000538235 CUX1P39880 1505 aa23.2■■□□□ 1.3
CHFR-216ENST00000538235 ABCC8Q09428 1581 aa23.18■■□□□ 1.3
CHFR-216ENST00000538235 SYNJ1O43426 1573 aa23.11■■□□□ 1.29
CHFR-216ENST00000538235 BIVM-ERCC5R4GMW8 1640 aa23.08■■□□□ 1.28
CHFR-216ENST00000538235 TARBP1Q13395 1621 aaKnown RBP23.06■■□□□ 1.28
CHFR-216ENST00000538235 POLA1P09884 1462 aaPredicted RBP23.05■■□□□ 1.28
CHFR-216ENST00000538235 FGD5Q6ZNL6 1462 aa23.03■■□□□ 1.28
CHFR-216ENST00000538235 WDR97A6NE52 1622 aa23.01■■□□□ 1.27
CHFR-216ENST00000538235 TOP2BQ02880 1626 aa23.01■■□□□ 1.27
CHFR-216ENST00000538235 WRNQ14191 1432 aaPredicted RBP eCLIP22.97■■□□□ 1.27
CHFR-216ENST00000538235 RAD54L2Q9Y4B4 1467 aa22.97■■□□□ 1.27
CHFR-216ENST00000538235 ZNF608Q9ULD9 1512 aaPredicted RBP22.97■■□□□ 1.27
CHFR-216ENST00000538235 IFT140Q96RY7 1462 aa22.93■■□□□ 1.26
CHFR-216ENST00000538235 EIF4G3O43432 1585 aaKnown RBP22.93■■□□□ 1.26
CHFR-216ENST00000538235 SOGA1O94964 1423 aa22.82■■□□□ 1.24
CHFR-216ENST00000538235 ABCA5Q8WWZ7 1642 aa22.8■■□□□ 1.24
CHFR-216ENST00000538235 AQRO60306 1485 aaKnown RBP eCLIP22.78■■□□□ 1.243e-10■■■■■ 62.8
CHFR-216ENST00000538235 ABCA10Q8WWZ4 1543 aa22.77■■□□□ 1.24
CHFR-216ENST00000538235 PBRM1Q86U86 1689 aa22.77■■□□□ 1.24
CHFR-216ENST00000538235 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
CHFR-216ENST00000538235 CHD1O14646 1710 aa22.66■■□□□ 1.22
CHFR-216ENST00000538235 GAPVD1Q14C86 1478 aa22.61■■□□□ 1.21
CHFR-216ENST00000538235 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
CHFR-216ENST00000538235 GRIN2BQ13224 1484 aa22.57■■□□□ 1.2
CHFR-216ENST00000538235 ADAMTS12P58397 1594 aa22.55■■□□□ 1.2
CHFR-216ENST00000538235 RUSC2Q8N2Y8 1516 aa22.51■■□□□ 1.19
CHFR-216ENST00000538235 MAGI1Q96QZ7 1491 aaPredicted RBP22.5■■□□□ 1.19
CHFR-216ENST00000538235 ERICH3Q5RHP9 1530 aa22.48■■□□□ 1.19
CHFR-216ENST00000538235 SYNJ2O15056 1496 aa22.42■■□□□ 1.18
CHFR-216ENST00000538235 KIF27Q86VH2 1401 aa22.4■■□□□ 1.18
CHFR-216ENST00000538235 CHIC1Q5VXU3 224 aa22.4■■□□□ 1.18
CHFR-216ENST00000538235 TRIM41Q8WV44 630 aa22.39■■□□□ 1.17
CHFR-216ENST00000538235 CUL7Q14999 1698 aa22.37■■□□□ 1.17
CHFR-216ENST00000538235 CLASP1Q7Z460 1538 aa22.35■■□□□ 1.17
CHFR-216ENST00000538235 GRIN2AQ12879 1464 aa22.34■■□□□ 1.17
CHFR-216ENST00000538235 CEP170Q5SW79 1584 aa22.34■■□□□ 1.17
CHFR-216ENST00000538235 IGF1RP08069 1367 aa22.34■■□□□ 1.17
CHFR-216ENST00000538235 FHAD1B1AJZ9 1412 aa22.32■■□□□ 1.16
CHFR-216ENST00000538235 DNAJC5Q9H3Z4 198 aa22.3■■□□□ 1.16
CHFR-216ENST00000538235 FBLN2P98095 1184 aa22.26■■□□□ 1.15
CHFR-216ENST00000538235 NUP160Q12769 1436 aa22.24■■□□□ 1.15
CHFR-216ENST00000538235 OSCARQ8IYS5 282 aa22.23■■□□□ 1.15
CHFR-216ENST00000538235 CHMP7Q8WUX9 453 aaPredicted RBP22.21■■□□□ 1.15
CHFR-216ENST00000538235 RIMBP3CA6NJZ7 1639 aa22.18■■□□□ 1.14
CHFR-216ENST00000538235 RIMBP3BA6NNM3 1639 aa22.18■■□□□ 1.14
CHFR-216ENST00000538235 RIMBP3Q9UFD9 1639 aa22.18■■□□□ 1.14
CHFR-216ENST00000538235 CARMIL1Q5VZK9 1371 aa22.17■■□□□ 1.14
CHFR-216ENST00000538235 SHROOM2Q13796 1616 aa22.17■■□□□ 1.14
CHFR-216ENST00000538235 PRXQ9BXM0 1461 aa22.15■■□□□ 1.14
CHFR-216ENST00000538235 ERCC6L2Q5T890 1561 aa22.14■■□□□ 1.13
CHFR-216ENST00000538235 ARHGEF11O15085 1522 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms