RNA–Protein interactions for RNA: ENST00000537686.5

GGA3-201, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GGA3, Length 4,069 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-201ENST00000537686 NISCHQ9Y2I1 1504 aa19.15■□□□□ 0.66
GGA3-201ENST00000537686 DCAF8L2P0C7V8 631 aa17.88■□□□□ 0.45
GGA3-201ENST00000537686 SUPT5HO00267 1087 aaKnown RBP17■□□□□ 0.31
GGA3-201ENST00000537686 SHROOM4Q9ULL8 1493 aa16.84■□□□□ 0.29
GGA3-201ENST00000537686 EHMT2Q96KQ7 1210 aa16.33■□□□□ 0.21
GGA3-201ENST00000537686 CCDC180Q9P1Z9 1646 aa16.16■□□□□ 0.18
GGA3-201ENST00000537686 ABCC9O60706 1549 aa16.15■□□□□ 0.18
GGA3-201ENST00000537686 FAM9AQ8IZU1 332 aaPredicted RBP16.01■□□□□ 0.15
GGA3-201ENST00000537686 ZCCHC6Q5VYS8 1495 aaKnown RBP15.98■□□□□ 0.15
GGA3-201ENST00000537686 APLP2Q06481 763 aa15.85■□□□□ 0.13
GGA3-201ENST00000537686 TTBK1Q5TCY1 1321 aaPredicted RBP15.75■□□□□ 0.11
GGA3-201ENST00000537686 PCGF6Q9BYE7 350 aa15.72■□□□□ 0.11
GGA3-201ENST00000537686 TRIM41Q8WV44 630 aa15.71■□□□□ 0.1
GGA3-201ENST00000537686 RANGAP1P46060 587 aaPredicted RBP15.63■□□□□ 0.09
GGA3-201ENST00000537686 PABPN1Q86U42 306 aaKnown RBP eCLIP15.63■□□□□ 0.09
GGA3-201ENST00000537686 SCRIBQ14160 1630 aa15.54■□□□□ 0.08
GGA3-201ENST00000537686 UBTFP17480 764 aaKnown RBP15.48■□□□□ 0.07
GGA3-201ENST00000537686 DCAF1Q9Y4B6 1507 aa15.45■□□□□ 0.06
GGA3-201ENST00000537686 ATP1B4Q9UN42 357 aaPredicted RBP15.41■□□□□ 0.06
GGA3-201ENST00000537686 NACADO15069 1562 aa15.37■□□□□ 0.05
GGA3-201ENST00000537686 CCER1Q8TC90 406 aaPredicted RBP15.36■□□□□ 0.05
GGA3-201ENST00000537686 CHIC1Q5VXU3 224 aa15.35■□□□□ 0.05
GGA3-201ENST00000537686 RB1CC1Q8TDY2 1594 aa15.35■□□□□ 0.05
GGA3-201ENST00000537686 PELP1Q8IZL8 1130 aaKnown RBP15.31■□□□□ 0.04
GGA3-201ENST00000537686 PPARGC1BQ86YN6 1023 aaKnown RBP15.28■□□□□ 0.04
GGA3-201ENST00000537686 ZEB1P37275 1124 aaPredicted RBP15.25■□□□□ 0.03
GGA3-201ENST00000537686 LOC105371045A0A1W2PR82 267 aa15.17■□□□□ 0.02
GGA3-201ENST00000537686 MYO15BQ96JP2 1530 aa15.15■□□□□ 0.02
GGA3-201ENST00000537686 RSF1Q96T23 1441 aaPredicted RBP15.11■□□□□ 0.01
GGA3-201ENST00000537686 CENPBP07199 599 aaPredicted RBP15.08■□□□□ 0
GGA3-201ENST00000537686 TRIM26Q12899 539 aaPredicted RBP15.06■□□□□ 0
GGA3-201ENST00000537686 CECR2Q9BXF3 1484 aa15.05■□□□□ 0
GGA3-201ENST00000537686 ITGAEP38570 1179 aa14.96□□□□□ -0.01
GGA3-201ENST00000537686 YTHDC1Q96MU7 727 aaKnown RBP14.9□□□□□ -0.02
GGA3-201ENST00000537686 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.9□□□□□ -0.02
GGA3-201ENST00000537686 HNRNPUL2Q1KMD3 747 aaKnown RBP14.9□□□□□ -0.02
GGA3-201ENST00000537686 MROH2BQ7Z745 1585 aa14.87□□□□□ -0.03
GGA3-201ENST00000537686 HRCP23327 699 aa14.87□□□□□ -0.03
GGA3-201ENST00000537686 BAZ1AQ9NRL2 1556 aaPredicted RBP14.85□□□□□ -0.03
GGA3-201ENST00000537686 NEFLP07196 543 aa14.75□□□□□ -0.05
GGA3-201ENST00000537686 MYT1LQ9UL68 1186 aa14.73□□□□□ -0.05
GGA3-201ENST00000537686 BAZ1BQ9UIG0 1483 aaKnown RBP14.7□□□□□ -0.06
GGA3-201ENST00000537686 WIZO95785 1651 aa14.67□□□□□ -0.06
GGA3-201ENST00000537686 ERICH6Q7L0X2 663 aa14.67□□□□□ -0.06
GGA3-201ENST00000537686 POLR3GLQ9BT43 218 aa14.66□□□□□ -0.06
GGA3-201ENST00000537686 CSRNP3Q8WYN3 585 aa14.59□□□□□ -0.07
GGA3-201ENST00000537686 CCDC88BA6NC98 1476 aa14.58□□□□□ -0.08
GGA3-201ENST00000537686 CNGB1Q14028 1251 aaPredicted RBP14.58□□□□□ -0.08
GGA3-201ENST00000537686 SMARCA4P51532 1647 aa14.58□□□□□ -0.08
GGA3-201ENST00000537686 FAM50AQ14320 339 aaKnown RBP14.57□□□□□ -0.08
GGA3-201ENST00000537686 ATAD2BQ9ULI0 1458 aa14.52□□□□□ -0.09
GGA3-201ENST00000537686 TOP2AP11388 1531 aaKnown RBP14.51□□□□□ -0.09
GGA3-201ENST00000537686 SMARCA2P51531 1590 aa14.5□□□□□ -0.09
GGA3-201ENST00000537686 WRNQ14191 1432 aaPredicted RBP eCLIP14.47□□□□□ -0.09
GGA3-201ENST00000537686 MYT1Q01538 1121 aa14.46□□□□□ -0.09
GGA3-201ENST00000537686 BICRAQ9NZM4 1560 aa14.46□□□□□ -0.1
GGA3-201ENST00000537686 DIEXFQ68CQ4 756 aaKnown RBP14.45□□□□□ -0.1
GGA3-201ENST00000537686 FBLN2P98095 1184 aa14.45□□□□□ -0.1
GGA3-201ENST00000537686 TRIM52Q96A61 297 aa14.44□□□□□ -0.1
GGA3-201ENST00000537686 NEUROD1Q13562 356 aa14.41□□□□□ -0.1
GGA3-201ENST00000537686 P3H3Q8IVL6 736 aa14.4□□□□□ -0.1
GGA3-201ENST00000537686 ABCC8Q09428 1581 aa14.39□□□□□ -0.11
GGA3-201ENST00000537686 EIF4G1Q04637 1599 aaKnown RBP14.34□□□□□ -0.11
GGA3-201ENST00000537686 UNC13AQ9UPW8 1703 aa14.34□□□□□ -0.11
GGA3-201ENST00000537686 SLC4A1APQ9BWU0 796 aaKnown RBP14.33□□□□□ -0.12
GGA3-201ENST00000537686 ARID3CA6NKF2 412 aa14.33□□□□□ -0.12
GGA3-201ENST00000537686 SOGA1O94964 1423 aa14.31□□□□□ -0.12
GGA3-201ENST00000537686 NCAPD3P42695 1498 aa14.27□□□□□ -0.12
GGA3-201ENST00000537686 ZNF326Q5BKZ1 582 aaKnown RBP14.27□□□□□ -0.12
GGA3-201ENST00000537686 EEA1Q15075 1411 aa14.26□□□□□ -0.13
GGA3-201ENST00000537686 CADPSQ9ULU8 1353 aa14.24□□□□□ -0.13
GGA3-201ENST00000537686 KIF27Q86VH2 1401 aa14.18□□□□□ -0.14
GGA3-201ENST00000537686 DAXXQ9UER7 740 aaPredicted RBP14.18□□□□□ -0.14
GGA3-201ENST00000537686 ZNF316A6NFI3 1004 aaPredicted RBP14.17□□□□□ -0.14
GGA3-201ENST00000537686 GOLGA3Q08378 1498 aa14.17□□□□□ -0.14
GGA3-201ENST00000537686 ZNF777Q9ULD5 760 aaPredicted RBP14.16□□□□□ -0.14
GGA3-201ENST00000537686 CEP162Q5TB80 1403 aa14.15□□□□□ -0.14
GGA3-201ENST00000537686 ANP32CO43423 234 aa14.14□□□□□ -0.15
GGA3-201ENST00000537686 CLIP1P30622 1438 aa14.13□□□□□ -0.15
GGA3-201ENST00000537686 TNIKQ9UKE5 1360 aa14.13□□□□□ -0.15
GGA3-201ENST00000537686 CEP164Q9UPV0 1460 aa14.12□□□□□ -0.15
GGA3-201ENST00000537686 CDK11AQ9UQ88 783 aaPredicted RBP14.11□□□□□ -0.15
GGA3-201ENST00000537686 RUSC2Q8N2Y8 1516 aa14.11□□□□□ -0.15
GGA3-201ENST00000537686 CUX2O14529 1486 aa14.11□□□□□ -0.15
GGA3-201ENST00000537686 CC2D2AQ9P2K1 1620 aa14.11□□□□□ -0.15
GGA3-201ENST00000537686 PDS5BQ9NTI5 1447 aa14.09□□□□□ -0.15
GGA3-201ENST00000537686 HMGXB3Q12766 1538 aa14.07□□□□□ -0.16
GGA3-201ENST00000537686 DNAJC5BQ9UF47 199 aa14.06□□□□□ -0.16
GGA3-201ENST00000537686 GTF3C3Q9Y5Q9 886 aa14.06□□□□□ -0.16
GGA3-201ENST00000537686 ERCC6Q03468 1493 aa14.06□□□□□ -0.16
GGA3-201ENST00000537686 BCANQ96GW7 911 aa14.06□□□□□ -0.16
GGA3-201ENST00000537686 CLSPNQ9HAW4 1339 aa14.05□□□□□ -0.16
GGA3-201ENST00000537686 FANCD2Q9BXW9 1451 aa14.05□□□□□ -0.16
GGA3-201ENST00000537686 PEG3Q9GZU2 1588 aa14.05□□□□□ -0.16
GGA3-201ENST00000537686 CFTRP13569 1480 aa14.02□□□□□ -0.16
GGA3-201ENST00000537686 CARMIL1Q5VZK9 1371 aa14.02□□□□□ -0.16
GGA3-201ENST00000537686 TDRD9Q8NDG6 1382 aaKnown RBP14.01□□□□□ -0.17
GGA3-201ENST00000537686 CHMP7Q8WUX9 453 aaPredicted RBP14□□□□□ -0.17
GGA3-201ENST00000537686 NESP48681 1621 aa13.98□□□□□ -0.17
GGA3-201ENST00000537686 CHIC2Q9UKJ5 165 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms