RNA–Protein interactions for RNA: ENST00000532918.4

COLCA1-203, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,366 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-203ENST00000532918 DCAF8L2P0C7V8 631 aa19.05■□□□□ 0.64
COLCA1-203ENST00000532918 NISCHQ9Y2I1 1504 aa18.17■□□□□ 0.5
COLCA1-203ENST00000532918 SUPT5HO00267 1087 aaKnown RBP17.59■□□□□ 0.41
COLCA1-203ENST00000532918 FAM9AQ8IZU1 332 aaPredicted RBP17.33■□□□□ 0.37
COLCA1-203ENST00000532918 SHROOM4Q9ULL8 1493 aa17.33■□□□□ 0.37
COLCA1-203ENST00000532918 APLP2Q06481 763 aa17.08■□□□□ 0.32
COLCA1-203ENST00000532918 PELP1Q8IZL8 1130 aaKnown RBP16.91■□□□□ 0.3
COLCA1-203ENST00000532918 EHMT2Q96KQ7 1210 aa16.91■□□□□ 0.3
COLCA1-203ENST00000532918 MYT1Q01538 1121 aa16.48■□□□□ 0.23
COLCA1-203ENST00000532918 ATP1B4Q9UN42 357 aaPredicted RBP16.48■□□□□ 0.23
COLCA1-203ENST00000532918 TRIM41Q8WV44 630 aa16.46■□□□□ 0.23
COLCA1-203ENST00000532918 RANGAP1P46060 587 aaPredicted RBP16.42■□□□□ 0.22
COLCA1-203ENST00000532918 UBTFP17480 764 aaKnown RBP16.33■□□□□ 0.21
COLCA1-203ENST00000532918 TTBK1Q5TCY1 1321 aaPredicted RBP16.29■□□□□ 0.2
COLCA1-203ENST00000532918 ERICH6Q7L0X2 663 aa16.23■□□□□ 0.19
COLCA1-203ENST00000532918 MYT1LQ9UL68 1186 aa16.14■□□□□ 0.17
COLCA1-203ENST00000532918 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.08■□□□□ 0.17
COLCA1-203ENST00000532918 HNRNPUL2Q1KMD3 747 aaKnown RBP16.08■□□□□ 0.17
COLCA1-203ENST00000532918 CCER1Q8TC90 406 aaPredicted RBP16.08■□□□□ 0.17
COLCA1-203ENST00000532918 PCGF6Q9BYE7 350 aa16.04■□□□□ 0.16
COLCA1-203ENST00000532918 ABCC9O60706 1549 aa16.02■□□□□ 0.16
COLCA1-203ENST00000532918 ZEB1P37275 1124 aaPredicted RBP15.98■□□□□ 0.15
COLCA1-203ENST00000532918 PABPN1Q86U42 306 aaKnown RBP eCLIP15.87■□□□□ 0.13
COLCA1-203ENST00000532918 CENPBP07199 599 aaPredicted RBP15.86■□□□□ 0.13
COLCA1-203ENST00000532918 ITGAEP38570 1179 aa15.65■□□□□ 0.1
COLCA1-203ENST00000532918 NEFLP07196 543 aa15.63■□□□□ 0.09
COLCA1-203ENST00000532918 CHIC1Q5VXU3 224 aa15.6■□□□□ 0.09
COLCA1-203ENST00000532918 FBLN2P98095 1184 aa15.59■□□□□ 0.09
COLCA1-203ENST00000532918 POLR3GLQ9BT43 218 aa15.54■□□□□ 0.08
COLCA1-203ENST00000532918 PPARGC1BQ86YN6 1023 aaKnown RBP15.53■□□□□ 0.08
COLCA1-203ENST00000532918 YTHDC1Q96MU7 727 aaKnown RBP15.48■□□□□ 0.07
COLCA1-203ENST00000532918 SLC4A1APQ9BWU0 796 aaKnown RBP15.48■□□□□ 0.07
COLCA1-203ENST00000532918 TRIM26Q12899 539 aaPredicted RBP15.47■□□□□ 0.07
COLCA1-203ENST00000532918 FAM50AQ14320 339 aaKnown RBP15.39■□□□□ 0.06
COLCA1-203ENST00000532918 TRIM52Q96A61 297 aa15.36■□□□□ 0.05
COLCA1-203ENST00000532918 NPM1P06748 294 aaKnown RBP eCLIP15.31■□□□□ 0.04
COLCA1-203ENST00000532918 ESF1Q9H501 851 aaKnown RBP15.3■□□□□ 0.04
COLCA1-203ENST00000532918 CDK11AQ9UQ88 783 aaPredicted RBP15.29■□□□□ 0.04
COLCA1-203ENST00000532918 LOC105371045A0A1W2PR82 267 aa15.27■□□□□ 0.03
COLCA1-203ENST00000532918 BCANQ96GW7 911 aa15.25■□□□□ 0.03
COLCA1-203ENST00000532918 DAXXQ9UER7 740 aaPredicted RBP15.24■□□□□ 0.03
COLCA1-203ENST00000532918 SCRIBQ14160 1630 aa15.23■□□□□ 0.03
COLCA1-203ENST00000532918 CNGB1Q14028 1251 aaPredicted RBP15.18■□□□□ 0.02
COLCA1-203ENST00000532918 P3H3Q8IVL6 736 aa15.09■□□□□ 0.01
COLCA1-203ENST00000532918 ZNF777Q9ULD5 760 aaPredicted RBP15.08■□□□□ 0.01
COLCA1-203ENST00000532918 CSRNP3Q8WYN3 585 aa15.08■□□□□ 0
COLCA1-203ENST00000532918 ZNF326Q5BKZ1 582 aaKnown RBP15.07■□□□□ 0
COLCA1-203ENST00000532918 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
COLCA1-203ENST00000532918 CCDC180Q9P1Z9 1646 aa15.07■□□□□ 0
COLCA1-203ENST00000532918 ARID3CA6NKF2 412 aa15.07■□□□□ 0
COLCA1-203ENST00000532918 RTL5Q5HYW3 569 aaPredicted RBP15.07■□□□□ 0
COLCA1-203ENST00000532918 NEFMP07197 916 aa15.07■□□□□ 0
COLCA1-203ENST00000532918 STAG3Q9UJ98 1225 aa15.05■□□□□ 0
COLCA1-203ENST00000532918 NEUROD1Q13562 356 aa15.04■□□□□ -0
COLCA1-203ENST00000532918 CHMP7Q8WUX9 453 aaPredicted RBP14.99□□□□□ -0.01
COLCA1-203ENST00000532918 ZBTB47Q9UFB7 747 aaPredicted RBP14.98□□□□□ -0.01
COLCA1-203ENST00000532918 CLSPNQ9HAW4 1339 aa14.98□□□□□ -0.01
COLCA1-203ENST00000532918 HRCP23327 699 aa14.97□□□□□ -0.01
COLCA1-203ENST00000532918 ZCCHC6Q5VYS8 1495 aaKnown RBP14.96□□□□□ -0.01
COLCA1-203ENST00000532918 SLC24A1O60721 1099 aa14.95□□□□□ -0.02
COLCA1-203ENST00000532918 PLPPR3Q6T4P5 718 aa14.91□□□□□ -0.02
COLCA1-203ENST00000532918 CHGAP10645 457 aaKnown RBP14.9□□□□□ -0.02
COLCA1-203ENST00000532918 ANP32CO43423 234 aa14.86□□□□□ -0.03
COLCA1-203ENST00000532918 NACADO15069 1562 aa14.84□□□□□ -0.03
COLCA1-203ENST00000532918 ZNF316A6NFI3 1004 aaPredicted RBP14.83□□□□□ -0.04
COLCA1-203ENST00000532918 TSPY4P0CV99 314 aa14.82□□□□□ -0.04
COLCA1-203ENST00000532918 TSPY10P0CW01 314 aa14.82□□□□□ -0.04
COLCA1-203ENST00000532918 CANXP27824 592 aaKnown RBP14.79□□□□□ -0.04
COLCA1-203ENST00000532918 ERCC6Q03468 1493 aa14.78□□□□□ -0.04
COLCA1-203ENST00000532918 DIEXFQ68CQ4 756 aaKnown RBP14.75□□□□□ -0.05
COLCA1-203ENST00000532918 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.72□□□□□ -0.05
COLCA1-203ENST00000532918 BAZ1BQ9UIG0 1483 aaKnown RBP14.71□□□□□ -0.05
COLCA1-203ENST00000532918 PLEKHD1A6NEE1 506 aa14.7□□□□□ -0.06
COLCA1-203ENST00000532918 MTUS2Q5JR59 1369 aa14.7□□□□□ -0.06
COLCA1-203ENST00000532918 TONSLQ96HA7 1378 aa14.67□□□□□ -0.06
COLCA1-203ENST00000532918 GLIPR1L2Q4G1C9 344 aa14.67□□□□□ -0.06
COLCA1-203ENST00000532918 ACIN1Q9UKV3 1341 aaKnown RBP14.66□□□□□ -0.06
COLCA1-203ENST00000532918 KCNH8Q96L42 1107 aa14.65□□□□□ -0.06
COLCA1-203ENST00000532918 ARID4BQ4LE39 1312 aaPredicted RBP14.65□□□□□ -0.06
COLCA1-203ENST00000532918 PPP1R15AO75807 674 aaPredicted RBP14.65□□□□□ -0.06
COLCA1-203ENST00000532918 RSF1Q96T23 1441 aaPredicted RBP14.62□□□□□ -0.07
COLCA1-203ENST00000532918 EIF5BO60841 1220 aaKnown RBP14.61□□□□□ -0.07
COLCA1-203ENST00000532918 SCAF1Q9H7N4 1312 aaKnown RBP14.61□□□□□ -0.07
COLCA1-203ENST00000532918 CHIC2Q9UKJ5 165 aa14.6□□□□□ -0.07
COLCA1-203ENST00000532918 C14orf37Q86TY3 774 aa14.6□□□□□ -0.07
COLCA1-203ENST00000532918 EEA1Q15075 1411 aa14.56□□□□□ -0.08
COLCA1-203ENST00000532918 NPM2Q86SE8 214 aaKnown RBP14.55□□□□□ -0.08
COLCA1-203ENST00000532918 TRHP20396 242 aaPredicted RBP14.54□□□□□ -0.08
COLCA1-203ENST00000532918 BCL11AQ9H165 835 aa14.53□□□□□ -0.08
COLCA1-203ENST00000532918 KIF27Q86VH2 1401 aa14.53□□□□□ -0.08
COLCA1-203ENST00000532918 HAP1P54257 671 aaPredicted RBP14.5□□□□□ -0.09
COLCA1-203ENST00000532918 CLIP1P30622 1438 aa14.49□□□□□ -0.09
COLCA1-203ENST00000532918 WRNQ14191 1432 aaPredicted RBP eCLIP14.49□□□□□ -0.09
COLCA1-203ENST00000532918 A0A0G2JS52 829 aa14.47□□□□□ -0.09
COLCA1-203ENST00000532918 CFDP1Q9UEE9 299 aaPredicted RBP14.47□□□□□ -0.09
COLCA1-203ENST00000532918 KDM2AQ9Y2K7 1162 aa14.46□□□□□ -0.09
COLCA1-203ENST00000532918 BAZ1AQ9NRL2 1556 aaPredicted RBP14.46□□□□□ -0.1
COLCA1-203ENST00000532918 GOLGA3Q08378 1498 aa14.43□□□□□ -0.1
COLCA1-203ENST00000532918 WDR43Q15061 677 aaKnown RBP eCLIP14.43□□□□□ -0.1
COLCA1-203ENST00000532918 ZBTB7CA1YPR0 619 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms