RNA–Protein interactions for RNA: ENST00000524794.5

NFRKB-203, Transcript of nuclear factor related to kappaB binding protein, humanhuman

TSL 1 (best) BASIC

Gene NFRKB, Length 4,351 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFRKB-203ENST00000524794 NISCHQ9Y2I1 1504 aa15.19■□□□□ 0.02
NFRKB-203ENST00000524794 DCAF8L2P0C7V8 631 aa14.76□□□□□ -0.05
NFRKB-203ENST00000524794 SHROOM4Q9ULL8 1493 aa13.93□□□□□ -0.18
NFRKB-203ENST00000524794 SUPT5HO00267 1087 aaKnown RBP13.81□□□□□ -0.2
NFRKB-203ENST00000524794 PELP1Q8IZL8 1130 aaKnown RBP13.61□□□□□ -0.23
NFRKB-203ENST00000524794 MYT1Q01538 1121 aa13.43□□□□□ -0.26
NFRKB-203ENST00000524794 EHMT2Q96KQ7 1210 aa13.18□□□□□ -0.3
NFRKB-203ENST00000524794 ABCC9O60706 1549 aa13.17□□□□□ -0.3
NFRKB-203ENST00000524794 FAM9AQ8IZU1 332 aaPredicted RBP12.96□□□□□ -0.33
NFRKB-203ENST00000524794 PCGF6Q9BYE7 350 aa12.92□□□□□ -0.34
NFRKB-203ENST00000524794 PABPN1Q86U42 306 aaKnown RBP eCLIP12.92□□□□□ -0.344e-6■□□□□ 9.3
NFRKB-203ENST00000524794 TRIM41Q8WV44 630 aa12.76□□□□□ -0.37
NFRKB-203ENST00000524794 HRCP23327 699 aa12.76□□□□□ -0.37
NFRKB-203ENST00000524794 CENPBP07199 599 aaPredicted RBP12.76□□□□□ -0.37
NFRKB-203ENST00000524794 RANGAP1P46060 587 aaPredicted RBP12.69□□□□□ -0.38
NFRKB-203ENST00000524794 TTBK1Q5TCY1 1321 aaPredicted RBP12.61□□□□□ -0.39
NFRKB-203ENST00000524794 CCDC180Q9P1Z9 1646 aa12.59□□□□□ -0.39
NFRKB-203ENST00000524794 ZCCHC6Q5VYS8 1495 aaKnown RBP12.59□□□□□ -0.39
NFRKB-203ENST00000524794 PPARGC1BQ86YN6 1023 aaKnown RBP12.58□□□□□ -0.4
NFRKB-203ENST00000524794 ZEB1P37275 1124 aaPredicted RBP12.52□□□□□ -0.41
NFRKB-203ENST00000524794 UBTFP17480 764 aaKnown RBP12.51□□□□□ -0.41
NFRKB-203ENST00000524794 APLP2Q06481 763 aa12.51□□□□□ -0.41
NFRKB-203ENST00000524794 ERICH6Q7L0X2 663 aa12.51□□□□□ -0.41
NFRKB-203ENST00000524794 CHIC1Q5VXU3 224 aa12.48□□□□□ -0.41
NFRKB-203ENST00000524794 SCRIBQ14160 1630 aa12.48□□□□□ -0.41
NFRKB-203ENST00000524794 ATP1B4Q9UN42 357 aaPredicted RBP12.42□□□□□ -0.42
NFRKB-203ENST00000524794 LOC105371045A0A1W2PR82 267 aa12.41□□□□□ -0.42
NFRKB-203ENST00000524794 YTHDC1Q96MU7 727 aaKnown RBP12.41□□□□□ -0.42
NFRKB-203ENST00000524794 CCER1Q8TC90 406 aaPredicted RBP12.27□□□□□ -0.44
NFRKB-203ENST00000524794 GTF3C3Q9Y5Q9 886 aa12.26□□□□□ -0.45
NFRKB-203ENST00000524794 RB1CC1Q8TDY2 1594 aa12.25□□□□□ -0.45
NFRKB-203ENST00000524794 NACADO15069 1562 aa12.18□□□□□ -0.46
NFRKB-203ENST00000524794 SCAF1Q9H7N4 1312 aaKnown RBP12.13□□□□□ -0.47
NFRKB-203ENST00000524794 TRIM26Q12899 539 aaPredicted RBP12.13□□□□□ -0.47
NFRKB-203ENST00000524794 DCAF1Q9Y4B6 1507 aa12.13□□□□□ -0.47
NFRKB-203ENST00000524794 ACIN1Q9UKV3 1341 aaKnown RBP12.1□□□□□ -0.47
NFRKB-203ENST00000524794 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.09□□□□□ -0.47
NFRKB-203ENST00000524794 HNRNPUL2Q1KMD3 747 aaKnown RBP12.09□□□□□ -0.47
NFRKB-203ENST00000524794 NEFLP07196 543 aa12.07□□□□□ -0.48
NFRKB-203ENST00000524794 RSF1Q96T23 1441 aaPredicted RBP12.06□□□□□ -0.48
NFRKB-203ENST00000524794 FBLN2P98095 1184 aa12.05□□□□□ -0.48
NFRKB-203ENST00000524794 CECR2Q9BXF3 1484 aa12.04□□□□□ -0.48
NFRKB-203ENST00000524794 ITGAEP38570 1179 aa12.02□□□□□ -0.48
NFRKB-203ENST00000524794 DIEXFQ68CQ4 756 aaKnown RBP11.99□□□□□ -0.49
NFRKB-203ENST00000524794 CSRNP3Q8WYN3 585 aa11.95□□□□□ -0.5
NFRKB-203ENST00000524794 BCL11AQ9H165 835 aa11.93□□□□□ -0.5
NFRKB-203ENST00000524794 P3H3Q8IVL6 736 aa11.92□□□□□ -0.5
NFRKB-203ENST00000524794 MYO15BQ96JP2 1530 aa11.91□□□□□ -0.5
NFRKB-203ENST00000524794 NEUROD1Q13562 356 aa11.89□□□□□ -0.51
NFRKB-203ENST00000524794 BAZ1BQ9UIG0 1483 aaKnown RBP11.87□□□□□ -0.51
NFRKB-203ENST00000524794 ARID3CA6NKF2 412 aa11.86□□□□□ -0.51
NFRKB-203ENST00000524794 MYT1LQ9UL68 1186 aa11.86□□□□□ -0.51
NFRKB-203ENST00000524794 MROH2BQ7Z745 1585 aa11.83□□□□□ -0.52
NFRKB-203ENST00000524794 BAZ1AQ9NRL2 1556 aaPredicted RBP11.83□□□□□ -0.52
NFRKB-203ENST00000524794 RTL5Q5HYW3 569 aaPredicted RBP11.82□□□□□ -0.52
NFRKB-203ENST00000524794 BCANQ96GW7 911 aa11.79□□□□□ -0.52
NFRKB-203ENST00000524794 FAM50AQ14320 339 aaKnown RBP11.77□□□□□ -0.53
NFRKB-203ENST00000524794 EIF5BO60841 1220 aaKnown RBP11.77□□□□□ -0.53
NFRKB-203ENST00000524794 ANP32EQ9BTT0 268 aa11.73□□□□□ -0.53
NFRKB-203ENST00000524794 WRNQ14191 1432 aaPredicted RBP eCLIP11.69□□□□□ -0.54
NFRKB-203ENST00000524794 CCDC88BA6NC98 1476 aa11.66□□□□□ -0.54
NFRKB-203ENST00000524794 CHMP7Q8WUX9 453 aaPredicted RBP11.65□□□□□ -0.54
NFRKB-203ENST00000524794 WIZO95785 1651 aa11.64□□□□□ -0.55
NFRKB-203ENST00000524794 DAXXQ9UER7 740 aaPredicted RBP11.6□□□□□ -0.55
NFRKB-203ENST00000524794 ERCC6Q03468 1493 aa11.59□□□□□ -0.55
NFRKB-203ENST00000524794 ATAD2BQ9ULI0 1458 aa11.59□□□□□ -0.55
NFRKB-203ENST00000524794 ZNF777Q9ULD5 760 aaPredicted RBP11.59□□□□□ -0.55
NFRKB-203ENST00000524794 TRIM52Q96A61 297 aa11.58□□□□□ -0.55
NFRKB-203ENST00000524794 SMARCA2P51531 1590 aa11.58□□□□□ -0.56
NFRKB-203ENST00000524794 CDK11AQ9UQ88 783 aaPredicted RBP11.55□□□□□ -0.56
NFRKB-203ENST00000524794 POLR3GLQ9BT43 218 aa11.54□□□□□ -0.56
NFRKB-203ENST00000524794 SOGA1O94964 1423 aa11.54□□□□□ -0.56
NFRKB-203ENST00000524794 ABCC8Q09428 1581 aa11.54□□□□□ -0.56
NFRKB-203ENST00000524794 ZNF316A6NFI3 1004 aaPredicted RBP11.53□□□□□ -0.56
NFRKB-203ENST00000524794 GLIPR1L2Q4G1C9 344 aa11.53□□□□□ -0.56
NFRKB-203ENST00000524794 SMARCA4P51532 1647 aa11.52□□□□□ -0.57
NFRKB-203ENST00000524794 KIF27Q86VH2 1401 aa11.51□□□□□ -0.57
NFRKB-203ENST00000524794 CNGB1Q14028 1251 aaPredicted RBP11.51□□□□□ -0.57
NFRKB-203ENST00000524794 CLIP1P30622 1438 aa11.49□□□□□ -0.57
NFRKB-203ENST00000524794 CADPSQ9ULU8 1353 aa11.49□□□□□ -0.57
NFRKB-203ENST00000524794 TOP2AP11388 1531 aaKnown RBP11.49□□□□□ -0.57
NFRKB-203ENST00000524794 PRKCSHP14314 528 aaPredicted RBP11.49□□□□□ -0.57
NFRKB-203ENST00000524794 TDRD9Q8NDG6 1382 aaKnown RBP11.47□□□□□ -0.57
NFRKB-203ENST00000524794 CUX2O14529 1486 aa11.47□□□□□ -0.57
NFRKB-203ENST00000524794 CLSPNQ9HAW4 1339 aa11.46□□□□□ -0.57
NFRKB-203ENST00000524794 NBR1Q14596 966 aa11.45□□□□□ -0.58
NFRKB-203ENST00000524794 EEA1Q15075 1411 aa11.45□□□□□ -0.58
NFRKB-203ENST00000524794 NPM1P06748 294 aaKnown RBP eCLIP11.45□□□□□ -0.58
NFRKB-203ENST00000524794 PDS5BQ9NTI5 1447 aa11.44□□□□□ -0.58
NFRKB-203ENST00000524794 CEP162Q5TB80 1403 aa11.44□□□□□ -0.58
NFRKB-203ENST00000524794 FKBP8Q14318 412 aa11.44□□□□□ -0.58
NFRKB-203ENST00000524794 CHIC2Q9UKJ5 165 aa11.44□□□□□ -0.58
NFRKB-203ENST00000524794 GOLGA3Q08378 1498 aa11.43□□□□□ -0.58
NFRKB-203ENST00000524794 ZNF326Q5BKZ1 582 aaKnown RBP11.42□□□□□ -0.58
NFRKB-203ENST00000524794 KCNH8Q96L42 1107 aa11.42□□□□□ -0.58
NFRKB-203ENST00000524794 CARMIL1Q5VZK9 1371 aa11.41□□□□□ -0.58
NFRKB-203ENST00000524794 DNAJC5BQ9UF47 199 aa11.41□□□□□ -0.58
NFRKB-203ENST00000524794 EIF4G1Q04637 1599 aaKnown RBP11.4□□□□□ -0.58
NFRKB-203ENST00000524794 MTUS2Q5JR59 1369 aa11.39□□□□□ -0.59
NFRKB-203ENST00000524794 CEP164Q9UPV0 1460 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms