RNA–Protein interactions for RNA: ENST00000523430.5

SQLE-206, Transcript of squalene epoxidase, humanhuman

TSL 2 BASIC

Gene SQLE, Length 1,879 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-206ENST00000523430 SF3B1O75533 1304 aaKnown RBP eCLIP21.63■■□□□ 1.051e-6■■■■■ 142.6
SQLE-206ENST00000523430 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.56■■□□□ 1.23e-8■■■■■ 56
SQLE-206ENST00000523430 DDX3XO00571 662 aaKnown RBP eCLIP22.47■■□□□ 1.194e-43■■■■■ 54.8
SQLE-206ENST00000523430 GTF2F1P35269 517 aaKnown RBP eCLIP22.56■■□□□ 1.23e-10■■■■■ 45.1
SQLE-206ENST00000523430 SF3A3Q12874 501 aaKnown RBP eCLIP21■□□□□ 0.952e-7■■■■■ 43
SQLE-206ENST00000523430 HNRNPMP52272 730 aaKnown RBP eCLIP30.44■■■□□ 2.461e-6■■■■■ 34.2
SQLE-206ENST00000523430 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.84■□□□□ 0.614e-8■■■■■ 34.1
SQLE-206ENST00000523430 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.66■■□□□ 1.065e-11■■■■■ 30.7
SQLE-206ENST00000523430 MATR3P43243 847 aaKnown RBP eCLIP22.56■■□□□ 1.28e-7■■■■■ 27.3
SQLE-206ENST00000523430 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.75■■■□□ 2.037e-8■■■■■ 27.2
SQLE-206ENST00000523430 SF3B4Q15427 424 aaKnown RBP eCLIP17.95■□□□□ 0.463e-7■■■■■ 26.8
SQLE-206ENST00000523430 AQRO60306 1485 aaKnown RBP eCLIP32.66■■■□□ 2.824e-12■■■■□ 26.3
SQLE-206ENST00000523430 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.82■□□□□ 0.443e-6■■■■□ 24.5
SQLE-206ENST00000523430 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.94■□□□□ 0.943e-7■■■■□ 23.3
SQLE-206ENST00000523430 KHSRPQ92945 711 aaKnown RBP eCLIP21.84■■□□□ 1.092e-11■■■■□ 22.8
SQLE-206ENST00000523430 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.37■□□□□ 0.216e-8■■■■□ 22
SQLE-206ENST00000523430 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.91■□□□□ 0.786e-13■■■■□ 21.3
SQLE-206ENST00000523430 FTOQ9C0B1 505 aaKnown RBP eCLIP24.19■■□□□ 1.463e-8■■■■□ 21
SQLE-206ENST00000523430 DDX6P26196 483 aaKnown RBP eCLIP20.98■□□□□ 0.958e-8■■■□□ 18.9
SQLE-206ENST00000523430 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.23■■■□□ 2.598e-9■■■□□ 18.5
SQLE-206ENST00000523430 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.35■■□□□ 1.335e-9■■■□□ 18.3
SQLE-206ENST00000523430 FUBP3Q96I24 572 aaKnown RBP eCLIP21.58■■□□□ 1.052e-8■■■□□ 17.7
SQLE-206ENST00000523430 SND1Q7KZF4 910 aaKnown RBP eCLIP21.85■■□□□ 1.097e-8■■■□□ 16.3
SQLE-206ENST00000523430 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.98■■□□□ 1.271e-6■■■□□ 16.2
SQLE-206ENST00000523430 EIF3GO75821 320 aaKnown RBP eCLIP16.63■□□□□ 0.253e-8■■■□□ 15.2
SQLE-206ENST00000523430 PABPC4Q13310 644 aaKnown RBP eCLIP23.19■■□□□ 1.32e-8■■■□□ 14.7
SQLE-206ENST00000523430 QKIQ96PU8 341 aaKnown RBP eCLIP21.52■■□□□ 1.034e-7■■■□□ 14.6
SQLE-206ENST00000523430 RPS3P23396 243 aaKnown RBP eCLIP20.61■□□□□ 0.892e-8■■□□□ 14.3
SQLE-206ENST00000523430 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.01■■□□□ 1.113e-6■■□□□ 14.1
SQLE-206ENST00000523430 EFTUD2Q15029 972 aaKnown RBP eCLIP21.35■■□□□ 1.019e-8■■□□□ 13.6
SQLE-206ENST00000523430 EIF3HO15372 352 aaKnown RBP eCLIP21.38■■□□□ 1.011e-6■■□□□ 13.6
SQLE-206ENST00000523430 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.72■■■□□ 2.517e-7■■□□□ 13.4
SQLE-206ENST00000523430 PRPF4O43172 522 aaKnown RBP eCLIP21.13■□□□□ 0.971e-6■■□□□ 13.4
SQLE-206ENST00000523430 FXR2P51116 673 aaKnown RBP eCLIP23.48■■□□□ 1.356e-7■■□□□ 12.8
SQLE-206ENST00000523430 PCBP1Q15365 356 aaKnown RBP eCLIP22.25■■□□□ 1.159e-7■■□□□ 12.7
SQLE-206ENST00000523430 RBM15Q96T37 977 aaKnown RBP eCLIP21.51■■□□□ 1.031e-6■■□□□ 12.4
SQLE-206ENST00000523430 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.43■■□□□ 1.345e-10■■□□□ 12.4
SQLE-206ENST00000523430 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.08■■□□□ 1.134e-12■■□□□ 12.1
SQLE-206ENST00000523430 TIA1P31483 386 aaKnown RBP eCLIP19.98■□□□□ 0.793e-6■■□□□ 12.1
SQLE-206ENST00000523430 FXR1P51114 621 aaKnown RBP eCLIP22.97■■□□□ 1.272e-6■□□□□ 11.2
SQLE-206ENST00000523430 CDC40O60508 579 aaKnown RBP eCLIP18.92■□□□□ 0.622e-7■□□□□ 11
SQLE-206ENST00000523430 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.67■□□□□ 0.91e-6■□□□□ 10.8
SQLE-206ENST00000523430 YBX3P16989 372 aaKnown RBP eCLIP23.63■■□□□ 1.372e-8■□□□□ 10.4
SQLE-206ENST00000523430 GPKOWQ92917 476 aaPredicted RBP eCLIP23.96■■□□□ 1.434e-7■□□□□ 10.4
SQLE-206ENST00000523430 HNRNPLP14866 589 aaKnown RBP eCLIP20.59■□□□□ 0.898e-7■□□□□ 10.1
SQLE-206ENST00000523430 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.68■□□□□ 0.583e-7■□□□□ 10
SQLE-206ENST00000523430 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.28■■□□□ 11e-6■□□□□ 9.8
SQLE-206ENST00000523430 ZC3H11AO75152 810 aaKnown RBP eCLIP22.42■■□□□ 1.181e-7■□□□□ 9.5
SQLE-206ENST00000523430 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.86■■□□□ 1.253e-9■□□□□ 9.5
SQLE-206ENST00000523430 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.41■■□□□ 1.823e-8■□□□□ 9.2
SQLE-206ENST00000523430 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.4■□□□□ 0.862e-7■□□□□ 8.7
SQLE-206ENST00000523430 FMR1Q06787 632 aaKnown RBP eCLIP23.43■■□□□ 1.343e-7■□□□□ 8.2
Retrieved 52 of 52 RNA–protein pairs in 9.6 ms