RNA–Protein interactions for RNA: ENST00000520857.5

TRAPPC9-208, Transcript of trafficking protein particle complex 9, humanhuman

TSL 1 (best)

Gene TRAPPC9, Length 3,693 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-208ENST00000520857 NISCHQ9Y2I1 1504 aa24.1■■□□□ 1.45
TRAPPC9-208ENST00000520857 SHROOM4Q9ULL8 1493 aa21.9■■□□□ 1.1
TRAPPC9-208ENST00000520857 SUPT5HO00267 1087 aaKnown RBP21.84■■□□□ 1.09
TRAPPC9-208ENST00000520857 PCGF6Q9BYE7 350 aa21.28■■□□□ 1
TRAPPC9-208ENST00000520857 HRCP23327 699 aa21.26■□□□□ 0.99
TRAPPC9-208ENST00000520857 DCAF8L2P0C7V8 631 aa21.22■□□□□ 0.99
TRAPPC9-208ENST00000520857 PPARGC1BQ86YN6 1023 aaKnown RBP21.03■□□□□ 0.96
TRAPPC9-208ENST00000520857 CHIC1Q5VXU3 224 aa20.98■□□□□ 0.95
TRAPPC9-208ENST00000520857 MYO15BQ96JP2 1530 aa20.77■□□□□ 0.92
TRAPPC9-208ENST00000520857 LOC105371045A0A1W2PR82 267 aa20.68■□□□□ 0.9
TRAPPC9-208ENST00000520857 EHMT2Q96KQ7 1210 aa20.43■□□□□ 0.86
TRAPPC9-208ENST00000520857 TRIM26Q12899 539 aaPredicted RBP20.43■□□□□ 0.86
TRAPPC9-208ENST00000520857 ZCCHC6Q5VYS8 1495 aaKnown RBP20.37■□□□□ 0.85
TRAPPC9-208ENST00000520857 FAM9AQ8IZU1 332 aaPredicted RBP20.32■□□□□ 0.84
TRAPPC9-208ENST00000520857 DCAF1Q9Y4B6 1507 aa20.23■□□□□ 0.83
TRAPPC9-208ENST00000520857 ZEB1P37275 1124 aaPredicted RBP20.21■□□□□ 0.83
TRAPPC9-208ENST00000520857 PELP1Q8IZL8 1130 aaKnown RBP20.21■□□□□ 0.83
TRAPPC9-208ENST00000520857 TRIM41Q8WV44 630 aa20.11■□□□□ 0.81
TRAPPC9-208ENST00000520857 SCAF1Q9H7N4 1312 aaKnown RBP19.98■□□□□ 0.79
TRAPPC9-208ENST00000520857 TTBK1Q5TCY1 1321 aaPredicted RBP19.86■□□□□ 0.77
TRAPPC9-208ENST00000520857 CCER1Q8TC90 406 aaPredicted RBP19.86■□□□□ 0.77
TRAPPC9-208ENST00000520857 CCDC180Q9P1Z9 1646 aa19.84■□□□□ 0.77
TRAPPC9-208ENST00000520857 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.8■□□□□ 0.76
TRAPPC9-208ENST00000520857 CENPBP07199 599 aaPredicted RBP19.69■□□□□ 0.74
TRAPPC9-208ENST00000520857 ACIN1Q9UKV3 1341 aaKnown RBP19.64■□□□□ 0.73
TRAPPC9-208ENST00000520857 NEUROD1Q13562 356 aa19.62■□□□□ 0.73
TRAPPC9-208ENST00000520857 GTF3C3Q9Y5Q9 886 aa19.62■□□□□ 0.73
TRAPPC9-208ENST00000520857 DIEXFQ68CQ4 756 aaKnown RBP19.59■□□□□ 0.73
TRAPPC9-208ENST00000520857 YTHDC1Q96MU7 727 aaKnown RBP19.56■□□□□ 0.72
TRAPPC9-208ENST00000520857 RSF1Q96T23 1441 aaPredicted RBP19.44■□□□□ 0.7
TRAPPC9-208ENST00000520857 MYT1Q01538 1121 aa19.35■□□□□ 0.69
TRAPPC9-208ENST00000520857 SCRIBQ14160 1630 aa19.33■□□□□ 0.68
TRAPPC9-208ENST00000520857 ABCC9O60706 1549 aa19.27■□□□□ 0.68
TRAPPC9-208ENST00000520857 RB1CC1Q8TDY2 1594 aa19.26■□□□□ 0.67
TRAPPC9-208ENST00000520857 UBTFP17480 764 aaKnown RBP19.26■□□□□ 0.67
TRAPPC9-208ENST00000520857 ZNF316A6NFI3 1004 aaPredicted RBP19.18■□□□□ 0.66
TRAPPC9-208ENST00000520857 HNRNPUL2Q1KMD3 747 aaKnown RBP19.18■□□□□ 0.66
TRAPPC9-208ENST00000520857 RANGAP1P46060 587 aaPredicted RBP19.11■□□□□ 0.65
TRAPPC9-208ENST00000520857 APLP2Q06481 763 aa19.04■□□□□ 0.64
TRAPPC9-208ENST00000520857 MIER1Q8N108 512 aa19.04■□□□□ 0.64
TRAPPC9-208ENST00000520857 CECR2Q9BXF3 1484 aa19.02■□□□□ 0.64
TRAPPC9-208ENST00000520857 CEP162Q5TB80 1403 aa18.91■□□□□ 0.62
TRAPPC9-208ENST00000520857 MROH2BQ7Z745 1585 aa18.89■□□□□ 0.61
TRAPPC9-208ENST00000520857 CSRNP3Q8WYN3 585 aa18.88■□□□□ 0.61
TRAPPC9-208ENST00000520857 WIZO95785 1651 aa18.77■□□□□ 0.6
TRAPPC9-208ENST00000520857 SOGA1O94964 1423 aa18.76■□□□□ 0.59
TRAPPC9-208ENST00000520857 CCDC88BA6NC98 1476 aa18.76■□□□□ 0.59
TRAPPC9-208ENST00000520857 ABCC8Q09428 1581 aa18.74■□□□□ 0.59
TRAPPC9-208ENST00000520857 TNIKQ9UKE5 1360 aa18.72■□□□□ 0.59
TRAPPC9-208ENST00000520857 WRNQ14191 1432 aaPredicted RBP eCLIP18.68■□□□□ 0.588e-10■■■■■ 68.9
TRAPPC9-208ENST00000520857 ITGAEP38570 1179 aa18.64■□□□□ 0.58
TRAPPC9-208ENST00000520857 BCANQ96GW7 911 aa18.64■□□□□ 0.57
TRAPPC9-208ENST00000520857 RUSC2Q8N2Y8 1516 aa18.59■□□□□ 0.57
TRAPPC9-208ENST00000520857 SUPT16HQ9Y5B9 1047 aaKnown RBP18.58■□□□□ 0.56
TRAPPC9-208ENST00000520857 GOLGA3Q08378 1498 aa18.55■□□□□ 0.56
TRAPPC9-208ENST00000520857 CLIP1P30622 1438 aa18.53■□□□□ 0.56
TRAPPC9-208ENST00000520857 EEA1Q15075 1411 aa18.5■□□□□ 0.55
TRAPPC9-208ENST00000520857 NACADO15069 1562 aa18.49■□□□□ 0.55
TRAPPC9-208ENST00000520857 BAZ1AQ9NRL2 1556 aaPredicted RBP18.49■□□□□ 0.55
TRAPPC9-208ENST00000520857 PABPN1Q86U42 306 aaKnown RBP eCLIP18.48■□□□□ 0.55
TRAPPC9-208ENST00000520857 NEFLP07196 543 aa18.44■□□□□ 0.54
TRAPPC9-208ENST00000520857 CLSPNQ9HAW4 1339 aa18.44■□□□□ 0.54
TRAPPC9-208ENST00000520857 TSHZ2Q9NRE2 1034 aa18.4■□□□□ 0.54
TRAPPC9-208ENST00000520857 FKBP8Q14318 412 aa18.39■□□□□ 0.53
TRAPPC9-208ENST00000520857 ANP32EQ9BTT0 268 aa18.38■□□□□ 0.53
TRAPPC9-208ENST00000520857 CEP164Q9UPV0 1460 aa18.36■□□□□ 0.53
TRAPPC9-208ENST00000520857 TOP2AP11388 1531 aaKnown RBP18.35■□□□□ 0.53
TRAPPC9-208ENST00000520857 VPS8Q8N3P4 1428 aa18.34■□□□□ 0.53
TRAPPC9-208ENST00000520857 KCNH8Q96L42 1107 aa18.33■□□□□ 0.52
TRAPPC9-208ENST00000520857 DDX10Q13206 875 aaKnown RBP18.31■□□□□ 0.52
TRAPPC9-208ENST00000520857 ATP1B4Q9UN42 357 aaPredicted RBP18.31■□□□□ 0.52
TRAPPC9-208ENST00000520857 SMARCA2P51531 1590 aa18.28■□□□□ 0.52
TRAPPC9-208ENST00000520857 DHX57Q6P158 1386 aaKnown RBP18.26■□□□□ 0.51
TRAPPC9-208ENST00000520857 KANK4Q5T7N3 995 aaPredicted RBP18.26■□□□□ 0.51
TRAPPC9-208ENST00000520857 EIF4G1Q04637 1599 aaKnown RBP18.26■□□□□ 0.51
TRAPPC9-208ENST00000520857 TRIM52Q96A61 297 aa18.25■□□□□ 0.51
TRAPPC9-208ENST00000520857 HIRIP3Q9BW71 556 aaPredicted RBP18.24■□□□□ 0.51
TRAPPC9-208ENST00000520857 ERICH6Q7L0X2 663 aa18.24■□□□□ 0.51
TRAPPC9-208ENST00000520857 RAPGEF2Q9Y4G8 1499 aa18.21■□□□□ 0.51
TRAPPC9-208ENST00000520857 FAM50AQ14320 339 aaKnown RBP18.2■□□□□ 0.5
TRAPPC9-208ENST00000520857 SMARCA4P51532 1647 aa18.19■□□□□ 0.5
TRAPPC9-208ENST00000520857 BCL11AQ9H165 835 aa18.19■□□□□ 0.5
TRAPPC9-208ENST00000520857 ANP32CO43423 234 aa18.13■□□□□ 0.49
TRAPPC9-208ENST00000520857 SIN3AQ96ST3 1273 aa18.11■□□□□ 0.49
TRAPPC9-208ENST00000520857 RBM19Q9Y4C8 960 aaKnown RBP18.08■□□□□ 0.49
TRAPPC9-208ENST00000520857 KIF21BO75037 1637 aa18.06■□□□□ 0.48
TRAPPC9-208ENST00000520857 IRX6P78412 446 aaPredicted RBP18.05■□□□□ 0.48
TRAPPC9-208ENST00000520857 CCNB3Q8WWL7 1395 aa18.05■□□□□ 0.48
TRAPPC9-208ENST00000520857 SYNJ1O43426 1573 aa18.03■□□□□ 0.48
TRAPPC9-208ENST00000520857 P3H3Q8IVL6 736 aa18.02■□□□□ 0.48
TRAPPC9-208ENST00000520857 BAZ1BQ9UIG0 1483 aaKnown RBP18.01■□□□□ 0.47
TRAPPC9-208ENST00000520857 RAB3GAP2Q9H2M9 1393 aa17.99■□□□□ 0.47
TRAPPC9-208ENST00000520857 CDK11AQ9UQ88 783 aaPredicted RBP17.97■□□□□ 0.47
TRAPPC9-208ENST00000520857 HNRNPUQ00839 825 aaKnown RBP eCLIP17.97■□□□□ 0.47
TRAPPC9-208ENST00000520857 CNGB1Q14028 1251 aaPredicted RBP17.9■□□□□ 0.46
TRAPPC9-208ENST00000520857 ARAP1Q96P48 1450 aa17.86■□□□□ 0.45
TRAPPC9-208ENST00000520857 TONSLQ96HA7 1378 aa17.86■□□□□ 0.45
TRAPPC9-208ENST00000520857 SETD5Q9C0A6 1442 aa17.84■□□□□ 0.45
TRAPPC9-208ENST00000520857 RRBP1Q9P2E9 1410 aaKnown RBP17.83■□□□□ 0.44
TRAPPC9-208ENST00000520857 KIF27Q86VH2 1401 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms