RNA–Protein interactions for RNA: ENST00000518344.1

FAM49B-208, Transcript of family with sequence similarity 49 member B, humanhuman

TSL 3

Gene FAM49B, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM49B-208ENST00000518344 NISCHQ9Y2I1 1504 aa45.36■■■■■ 4.85
FAM49B-208ENST00000518344 CCDC180Q9P1Z9 1646 aa40.27■■■■■ 4.04
FAM49B-208ENST00000518344 ABCC9O60706 1549 aa39.74■■■■□ 3.95
FAM49B-208ENST00000518344 DCAF8L2P0C7V8 631 aa38.21■■■■□ 3.71
FAM49B-208ENST00000518344 RB1CC1Q8TDY2 1594 aa38.06■■■■□ 3.68
FAM49B-208ENST00000518344 NACADO15069 1562 aa37.97■■■■□ 3.67
FAM49B-208ENST00000518344 ZCCHC6Q5VYS8 1495 aaKnown RBP37.72■■■■□ 3.63
FAM49B-208ENST00000518344 MYO15BQ96JP2 1530 aa37.64■■■■□ 3.62
FAM49B-208ENST00000518344 DCAF1Q9Y4B6 1507 aa37.45■■■■□ 3.59
FAM49B-208ENST00000518344 PABPN1Q86U42 306 aaKnown RBP eCLIP37.19■■■■□ 3.54
FAM49B-208ENST00000518344 UNC13AQ9UPW8 1703 aa37.09■■■■□ 3.53
FAM49B-208ENST00000518344 BICRAQ9NZM4 1560 aa36.89■■■■□ 3.5
FAM49B-208ENST00000518344 SCRIBQ14160 1630 aa36.86■■■■□ 3.49
FAM49B-208ENST00000518344 DNAJC5BQ9UF47 199 aa36.64■■■■□ 3.46
FAM49B-208ENST00000518344 SHROOM4Q9ULL8 1493 aa36.43■■■■□ 3.42
FAM49B-208ENST00000518344 EIF4G1Q04637 1599 aaKnown RBP35.96■■■■□ 3.35
FAM49B-208ENST00000518344 CC2D2AQ9P2K1 1620 aa35.86■■■■□ 3.33
FAM49B-208ENST00000518344 CECR2Q9BXF3 1484 aa35.69■■■■□ 3.3
FAM49B-208ENST00000518344 SMARCA4P51532 1647 aa35.19■■■■□ 3.22
FAM49B-208ENST00000518344 BAZ1AQ9NRL2 1556 aaPredicted RBP35.15■■■■□ 3.22
FAM49B-208ENST00000518344 ATAD2BQ9ULI0 1458 aa35.09■■■■□ 3.21
FAM49B-208ENST00000518344 NCAPD3P42695 1498 aa35.08■■■■□ 3.21
FAM49B-208ENST00000518344 SMARCA2P51531 1590 aa35■■■■□ 3.19
FAM49B-208ENST00000518344 MROH2BQ7Z745 1585 aa34.97■■■■□ 3.19
FAM49B-208ENST00000518344 HMGXB3Q12766 1538 aa34.83■■■■□ 3.17
FAM49B-208ENST00000518344 PEG3Q9GZU2 1588 aa34.81■■■■□ 3.16
FAM49B-208ENST00000518344 BAZ1BQ9UIG0 1483 aaKnown RBP34.8■■■■□ 3.16
FAM49B-208ENST00000518344 WIZO95785 1651 aa34.57■■■■□ 3.13
FAM49B-208ENST00000518344 RSF1Q96T23 1441 aaPredicted RBP34.55■■■■□ 3.12
FAM49B-208ENST00000518344 NESP48681 1621 aa34.32■■■■□ 3.08
FAM49B-208ENST00000518344 ERCC6Q03468 1493 aa34.27■■■■□ 3.08
FAM49B-208ENST00000518344 TOP2AP11388 1531 aaKnown RBP34.18■■■■□ 3.06
FAM49B-208ENST00000518344 LAMC3Q9Y6N6 1575 aa34.13■■■■□ 3.05
FAM49B-208ENST00000518344 CADPSQ9ULU8 1353 aa34.1■■■■□ 3.05
FAM49B-208ENST00000518344 PDS5BQ9NTI5 1447 aa33.99■■■■□ 3.03
FAM49B-208ENST00000518344 CUX2O14529 1486 aa33.87■■■■□ 3.01
FAM49B-208ENST00000518344 CCDC88BA6NC98 1476 aa33.85■■■■□ 3.01
FAM49B-208ENST00000518344 CFTRP13569 1480 aa33.82■■■■□ 3
FAM49B-208ENST00000518344 KIF21AQ7Z4S6 1674 aa33.81■■■■□ 3
FAM49B-208ENST00000518344 SUPT5HO00267 1087 aaKnown RBP33.73■■■□□ 2.99
FAM49B-208ENST00000518344 THOC2Q8NI27 1593 aaKnown RBP33.72■■■□□ 2.99
FAM49B-208ENST00000518344 FANCD2Q9BXW9 1451 aa33.69■■■□□ 2.98
FAM49B-208ENST00000518344 CEP164Q9UPV0 1460 aa33.64■■■□□ 2.98
FAM49B-208ENST00000518344 MRC2Q9UBG0 1479 aa33.62■■■□□ 2.97
FAM49B-208ENST00000518344 WDR62O43379 1518 aa33.47■■■□□ 2.95
FAM49B-208ENST00000518344 PRDM2Q13029 1718 aa33.39■■■□□ 2.94
FAM49B-208ENST00000518344 URB2Q14146 1524 aaKnown RBP33.33■■■□□ 2.93
FAM49B-208ENST00000518344 TOPBP1Q92547 1522 aa33.12■■■□□ 2.89
FAM49B-208ENST00000518344 DNAJC5Q9H3Z4 198 aa33.09■■■□□ 2.89
FAM49B-208ENST00000518344 ABCC8Q09428 1581 aa33.09■■■□□ 2.89
FAM49B-208ENST00000518344 DNMBPQ6XZF7 1577 aa33.03■■■□□ 2.88
FAM49B-208ENST00000518344 IFT140Q96RY7 1462 aa32.94■■■□□ 2.86
FAM49B-208ENST00000518344 ZNF608Q9ULD9 1512 aaPredicted RBP32.83■■■□□ 2.85
FAM49B-208ENST00000518344 POLA1P09884 1462 aaPredicted RBP32.83■■■□□ 2.85
FAM49B-208ENST00000518344 CUX1P39880 1505 aa32.81■■■□□ 2.84
FAM49B-208ENST00000518344 SOGA1O94964 1423 aa32.76■■■□□ 2.83
FAM49B-208ENST00000518344 RAD54L2Q9Y4B4 1467 aa32.74■■■□□ 2.83
FAM49B-208ENST00000518344 FGD5Q6ZNL6 1462 aa32.74■■■□□ 2.83
FAM49B-208ENST00000518344 TARBP1Q13395 1621 aaKnown RBP32.71■■■□□ 2.83
FAM49B-208ENST00000518344 AQRO60306 1485 aaKnown RBP eCLIP32.67■■■□□ 2.82
FAM49B-208ENST00000518344 EIF4G3O43432 1585 aaKnown RBP32.62■■■□□ 2.81
FAM49B-208ENST00000518344 TDRD9Q8NDG6 1382 aaKnown RBP32.6■■■□□ 2.81
FAM49B-208ENST00000518344 WRNQ14191 1432 aaPredicted RBP eCLIP32.59■■■□□ 2.81
FAM49B-208ENST00000518344 OSCARQ8IYS5 282 aa32.56■■■□□ 2.8
FAM49B-208ENST00000518344 SYNJ1O43426 1573 aa32.46■■■□□ 2.79
FAM49B-208ENST00000518344 TOP2BQ02880 1626 aa32.45■■■□□ 2.79
FAM49B-208ENST00000518344 BIVM-ERCC5R4GMW8 1640 aa32.41■■■□□ 2.78
FAM49B-208ENST00000518344 FBLN2P98095 1184 aa32.41■■■□□ 2.78
FAM49B-208ENST00000518344 WDR97A6NE52 1622 aa32.39■■■□□ 2.78
FAM49B-208ENST00000518344 ABCA10Q8WWZ4 1543 aa32.38■■■□□ 2.77
FAM49B-208ENST00000518344 GRIN2BQ13224 1484 aa32.34■■■□□ 2.77
FAM49B-208ENST00000518344 GAPVD1Q14C86 1478 aa32.33■■■□□ 2.77
FAM49B-208ENST00000518344 SNAPC4Q5SXM2 1469 aa32.32■■■□□ 2.76
FAM49B-208ENST00000518344 CHMP7Q8WUX9 453 aaPredicted RBP32.25■■■□□ 2.75
FAM49B-208ENST00000518344 MAGI1Q96QZ7 1491 aaPredicted RBP32.23■■■□□ 2.75
FAM49B-208ENST00000518344 ABCA5Q8WWZ7 1642 aa32.22■■■□□ 2.75
FAM49B-208ENST00000518344 CHD1O14646 1710 aa32.21■■■□□ 2.75
FAM49B-208ENST00000518344 PBRM1Q86U86 1689 aa32.17■■■□□ 2.74
FAM49B-208ENST00000518344 SYNJ2O15056 1496 aa32.13■■■□□ 2.73
FAM49B-208ENST00000518344 TRIM41Q8WV44 630 aa32.05■■■□□ 2.72
FAM49B-208ENST00000518344 ERICH3Q5RHP9 1530 aa31.98■■■□□ 2.71
FAM49B-208ENST00000518344 FHAD1B1AJZ9 1412 aa31.94■■■□□ 2.7
FAM49B-208ENST00000518344 ARHGEF11O15085 1522 aa31.94■■■□□ 2.7
FAM49B-208ENST00000518344 ADAMTS12P58397 1594 aa31.94■■■□□ 2.7
FAM49B-208ENST00000518344 RIMBP3CA6NJZ7 1639 aa31.93■■■□□ 2.7
FAM49B-208ENST00000518344 RIMBP3BA6NNM3 1639 aa31.93■■■□□ 2.7
FAM49B-208ENST00000518344 RIMBP3Q9UFD9 1639 aa31.93■■■□□ 2.7
FAM49B-208ENST00000518344 KIF27Q86VH2 1401 aa31.92■■■□□ 2.7
FAM49B-208ENST00000518344 GRIN2AQ12879 1464 aa31.91■■■□□ 2.7
FAM49B-208ENST00000518344 CLASP1Q7Z460 1538 aa31.89■■■□□ 2.7
FAM49B-208ENST00000518344 IGF1RP08069 1367 aa31.83■■■□□ 2.69
FAM49B-208ENST00000518344 CYB5RLQ6IPT4 315 aa31.79■■■□□ 2.68
FAM49B-208ENST00000518344 NUP160Q12769 1436 aa31.75■■■□□ 2.67
FAM49B-208ENST00000518344 CEP170Q5SW79 1584 aa31.73■■■□□ 2.67
FAM49B-208ENST00000518344 ARAP1Q96P48 1450 aa31.67■■■□□ 2.66
FAM49B-208ENST00000518344 CARMIL1Q5VZK9 1371 aa31.65■■■□□ 2.66
FAM49B-208ENST00000518344 CUL7Q14999 1698 aa31.63■■■□□ 2.65
FAM49B-208ENST00000518344 RUSC2Q8N2Y8 1516 aa31.61■■■□□ 2.65
FAM49B-208ENST00000518344 JPH4Q96JJ6 628 aa31.54■■■□□ 2.64
FAM49B-208ENST00000518344 ERCC6L2Q5T890 1561 aa31.49■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms