RNA–Protein interactions for RNA: ENST00000516405.1

RNU6-542P-201, Transcript of RNA, U6 small nuclear 542, pseudogene, humanhuman

BASIC

Gene RNU6-542P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-542P-201ENST00000516405 AEBP2Q6ZN18 517 aaPredicted RBP8.41□□□□□ -1.06
RNU6-542P-201ENST00000516405 POTEDQ86YR6 584 aa7.92□□□□□ -1.14
RNU6-542P-201ENST00000516405 CHIC1Q5VXU3 224 aa7.71□□□□□ -1.18
RNU6-542P-201ENST00000516405 SENP3Q9H4L4 574 aaPredicted RBP7.17□□□□□ -1.26
RNU6-542P-201ENST00000516405 PHF23Q9BUL5 403 aaPredicted RBP7.03□□□□□ -1.28
RNU6-542P-201ENST00000516405 FOXD1Q16676 465 aa6.88□□□□□ -1.31
RNU6-542P-201ENST00000516405 MSH5O43196 834 aa6.64□□□□□ -1.35
RNU6-542P-201ENST00000516405 CACNB1Q02641 598 aaPredicted RBP6.2□□□□□ -1.42
RNU6-542P-201ENST00000516405 PIAS4Q8N2W9 510 aaPredicted RBP6.17□□□□□ -1.42
RNU6-542P-201ENST00000516405 POTEHQ6S545 545 aa6.02□□□□□ -1.45
RNU6-542P-201ENST00000516405 PPP6R1Q9UPN7 881 aa5.87□□□□□ -1.47
RNU6-542P-201ENST00000516405 ADRA2BP18089 450 aa5.77□□□□□ -1.49
RNU6-542P-201ENST00000516405 RNF39Q9H2S5 420 aa5.65□□□□□ -1.5
RNU6-542P-201ENST00000516405 DMRT2Q9Y5R5 561 aa5.6□□□□□ -1.51
RNU6-542P-201ENST00000516405 MAPK8IP2Q13387 824 aaPredicted RBP5.56□□□□□ -1.52
RNU6-542P-201ENST00000516405 C1QBPQ07021 282 aaKnown RBP5.47□□□□□ -1.53
RNU6-542P-201ENST00000516405 DCAF8L1A6NGE4 600 aa5.38□□□□□ -1.55
RNU6-542P-201ENST00000516405 PLPPR3Q6T4P5 718 aa5.31□□□□□ -1.56
RNU6-542P-201ENST00000516405 PLSCR2Q9NRY7 297 aa5.28□□□□□ -1.56
RNU6-542P-201ENST00000516405 SP7Q8TDD2 431 aaPredicted RBP5.26□□□□□ -1.57
RNU6-542P-201ENST00000516405 SCAF1Q9H7N4 1312 aaKnown RBP5.14□□□□□ -1.59
RNU6-542P-201ENST00000516405 HOXD11P31277 338 aaPredicted RBP5.1□□□□□ -1.59
RNU6-542P-201ENST00000516405 DSG3P32926 999 aa5.04□□□□□ -1.6
RNU6-542P-201ENST00000516405 DNAJC5BQ9UF47 199 aa5.02□□□□□ -1.61
RNU6-542P-201ENST00000516405 CHRDL2Q6WN34 429 aa5□□□□□ -1.61
RNU6-542P-201ENST00000516405 LHX8Q68G74 356 aa4.93□□□□□ -1.62
RNU6-542P-201ENST00000516405 SPINK5Q9NQ38 1064 aaPredicted RBP4.87□□□□□ -1.63
RNU6-542P-201ENST00000516405 HAX1O00165 279 aa4.83□□□□□ -1.64
RNU6-542P-201ENST00000516405 CAPN15O75808 1086 aa4.83□□□□□ -1.64
RNU6-542P-201ENST00000516405 EVX2Q03828 476 aa4.83□□□□□ -1.64
RNU6-542P-201ENST00000516405 RNF216Q9NWF9 866 aaPredicted RBP4.82□□□□□ -1.64
RNU6-542P-201ENST00000516405 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.8□□□□□ -1.64
RNU6-542P-201ENST00000516405 PIP4P2Q8N4L2 257 aa4.74□□□□□ -1.65
RNU6-542P-201ENST00000516405 RBM42Q9BTD8 480 aaKnown RBP4.72□□□□□ -1.65
RNU6-542P-201ENST00000516405 POTEMA6NI47 508 aa4.69□□□□□ -1.66
RNU6-542P-201ENST00000516405 ABCB7O75027 752 aa4.68□□□□□ -1.66
RNU6-542P-201ENST00000516405 U3KPZ7 1027 aaPredicted RBP4.68□□□□□ -1.66
RNU6-542P-201ENST00000516405 CNKSR2Q8WXI2 1034 aa4.65□□□□□ -1.67
RNU6-542P-201ENST00000516405 POTEGQ6S5H5 508 aa4.64□□□□□ -1.67
RNU6-542P-201ENST00000516405 GABBR2O75899 941 aa4.6□□□□□ -1.67
RNU6-542P-201ENST00000516405 PPP4R3CPQ6ZMV5 832 aa4.59□□□□□ -1.67
RNU6-542P-201ENST00000516405 FXR2P51116 673 aaKnown RBP eCLIP4.58□□□□□ -1.68
RNU6-542P-201ENST00000516405 PCDH10Q9P2E7 1040 aa4.58□□□□□ -1.68
RNU6-542P-201ENST00000516405 TRHP20396 242 aaPredicted RBP4.57□□□□□ -1.68
RNU6-542P-201ENST00000516405 POTEIP0CG38 1075 aa4.55□□□□□ -1.68
RNU6-542P-201ENST00000516405 OTUD5Q96G74 571 aa4.5□□□□□ -1.69
RNU6-542P-201ENST00000516405 REM2Q8IYK8 340 aaPredicted RBP4.49□□□□□ -1.69
RNU6-542P-201ENST00000516405 AKT1S1Q96B36 256 aa4.48□□□□□ -1.69
RNU6-542P-201ENST00000516405 ZNF219Q9P2Y4 722 aaPredicted RBP4.48□□□□□ -1.69
RNU6-542P-201ENST00000516405 C19orf67A6NJJ6 358 aa4.46□□□□□ -1.7
RNU6-542P-201ENST00000516405 PITPNM1O00562 1244 aa4.46□□□□□ -1.7
RNU6-542P-201ENST00000516405 LCE2DQ5TA82 110 aaPredicted RBP4.41□□□□□ -1.7
RNU6-542P-201ENST00000516405 POTEB2H3BUK9 544 aa4.4□□□□□ -1.71
RNU6-542P-201ENST00000516405 PRKAR2AP13861 404 aaKnown RBP4.31□□□□□ -1.72
RNU6-542P-201ENST00000516405 APLP2Q06481 763 aa4.3□□□□□ -1.72
RNU6-542P-201ENST00000516405 POLA2Q14181 598 aa4.3□□□□□ -1.72
RNU6-542P-201ENST00000516405 MMRN1Q13201 1228 aa4.28□□□□□ -1.72
RNU6-542P-201ENST00000516405 CDAN1Q8IWY9 1227 aa4.28□□□□□ -1.72
RNU6-542P-201ENST00000516405 FAM163AQ96GL9 167 aaPredicted RBP4.26□□□□□ -1.73
RNU6-542P-201ENST00000516405 DCBLD2Q96PD2 775 aa4.24□□□□□ -1.73
RNU6-542P-201ENST00000516405 POTEJP0CG39 1038 aa4.21□□□□□ -1.74
RNU6-542P-201ENST00000516405 SPNS2Q8IVW8 549 aa4.2□□□□□ -1.74
RNU6-542P-201ENST00000516405 SLC4A2P04920 1241 aa4.18□□□□□ -1.74
RNU6-542P-201ENST00000516405 OSCARQ8IYS5 282 aa4.18□□□□□ -1.74
RNU6-542P-201ENST00000516405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.14□□□□□ -1.75
RNU6-542P-201ENST00000516405 CLCN6P51797 869 aa4.14□□□□□ -1.75
RNU6-542P-201ENST00000516405 HNRNPUL2Q1KMD3 747 aaKnown RBP4.14□□□□□ -1.75
RNU6-542P-201ENST00000516405 CHADLQ6NUI6 762 aa4.14□□□□□ -1.75
RNU6-542P-201ENST00000516405 NPM3O75607 178 aaKnown RBP4.13□□□□□ -1.75
RNU6-542P-201ENST00000516405 CD44P16070 742 aaKnown RBP4.11□□□□□ -1.75
RNU6-542P-201ENST00000516405 SAMD1Q6SPF0 538 aaPredicted RBP4.11□□□□□ -1.75
RNU6-542P-201ENST00000516405 PELP1Q8IZL8 1130 aaKnown RBP4.1□□□□□ -1.75
RNU6-542P-201ENST00000516405 GALR2O43603 387 aaPredicted RBP4.08□□□□□ -1.76
RNU6-542P-201ENST00000516405 NCBP3Q53F19 620 aaKnown RBP4.08□□□□□ -1.76
RNU6-542P-201ENST00000516405 CLEC11AQ9Y240 323 aa4.08□□□□□ -1.76
RNU6-542P-201ENST00000516405 MAMSTRQ6ZN01 415 aa4.04□□□□□ -1.76
RNU6-542P-201ENST00000516405 ZBTB12Q9Y330 459 aaPredicted RBP4.03□□□□□ -1.76
RNU6-542P-201ENST00000516405 ZNF579Q8NAF0 562 aaKnown RBP4.01□□□□□ -1.77
RNU6-542P-201ENST00000516405 SPDYE1Q8NFV5 336 aaPredicted RBP4□□□□□ -1.77
RNU6-542P-201ENST00000516405 METRNQ9UJH8 293 aa4□□□□□ -1.77
RNU6-542P-201ENST00000516405 ST18O60284 1047 aa3.99□□□□□ -1.77
RNU6-542P-201ENST00000516405 SCUBE2Q9NQ36 999 aa3.98□□□□□ -1.77
RNU6-542P-201ENST00000516405 FARP1Q9Y4F1 1045 aaPredicted RBP3.96□□□□□ -1.78
RNU6-542P-201ENST00000516405 C7P10643 843 aa3.94□□□□□ -1.78
RNU6-542P-201ENST00000516405 ZRANB1Q9UGI0 708 aa3.94□□□□□ -1.78
RNU6-542P-201ENST00000516405 SLC39A7Q92504 469 aa3.92□□□□□ -1.78
RNU6-542P-201ENST00000516405 ASTLQ6HA08 431 aaPredicted RBP3.91□□□□□ -1.78
RNU6-542P-201ENST00000516405 POTEFA5A3E0 1075 aa3.9□□□□□ -1.79
RNU6-542P-201ENST00000516405 KRTAP3-3Q9BYR6 98 aa3.89□□□□□ -1.79
RNU6-542P-201ENST00000516405 KRTAP3-2Q9BYR7 98 aa3.89□□□□□ -1.79
RNU6-542P-201ENST00000516405 SPDYE2BA6NHP3 402 aa3.88□□□□□ -1.79
RNU6-542P-201ENST00000516405 ATMINO43313 823 aaPredicted RBP3.88□□□□□ -1.79
RNU6-542P-201ENST00000516405 PRR29P0C7W0 189 aa3.88□□□□□ -1.79
RNU6-542P-201ENST00000516405 SPDYE6P0CI01 402 aa3.88□□□□□ -1.79
RNU6-542P-201ENST00000516405 SPDYE2Q495Y8 402 aa3.88□□□□□ -1.79
RNU6-542P-201ENST00000516405 ATF5Q9Y2D1 282 aaPredicted RBP3.87□□□□□ -1.79
RNU6-542P-201ENST00000516405 PHF12Q96QT6 1004 aa3.84□□□□□ -1.79
RNU6-542P-201ENST00000516405 MARVELD3Q96A59 401 aa3.83□□□□□ -1.8
RNU6-542P-201ENST00000516405 POTEB3A0JP26 581 aa3.81□□□□□ -1.8
RNU6-542P-201ENST00000516405 POTEBQ6S5H4 581 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms