RNA–Protein interactions for RNA: ENST00000514537.5

CLDND1-230, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 1,013 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-230ENST00000514537 NISCHQ9Y2I1 1504 aa56.75■■■■■ 6.68
CLDND1-230ENST00000514537 CCDC180Q9P1Z9 1646 aa50.54■■■■■ 5.68
CLDND1-230ENST00000514537 ABCC9O60706 1549 aa50.05■■■■■ 5.6
CLDND1-230ENST00000514537 RB1CC1Q8TDY2 1594 aa47.88■■■■■ 5.25
CLDND1-230ENST00000514537 NACADO15069 1562 aa47.73■■■■■ 5.23
CLDND1-230ENST00000514537 DCAF8L2P0C7V8 631 aa47.69■■■■■ 5.22
CLDND1-230ENST00000514537 MYO15BQ96JP2 1530 aa47.32■■■■■ 5.17
CLDND1-230ENST00000514537 ZCCHC6Q5VYS8 1495 aaKnown RBP47.15■■■■■ 5.14
CLDND1-230ENST00000514537 DCAF1Q9Y4B6 1507 aa46.93■■■■■ 5.1
CLDND1-230ENST00000514537 PABPN1Q86U42 306 aaKnown RBP eCLIP46.76■■■■■ 5.08
CLDND1-230ENST00000514537 UNC13AQ9UPW8 1703 aa46.67■■■■■ 5.06
CLDND1-230ENST00000514537 DNAJC5BQ9UF47 199 aa46.5■■■■■ 5.03
CLDND1-230ENST00000514537 BICRAQ9NZM4 1560 aa46.47■■■■■ 5.03
CLDND1-230ENST00000514537 SCRIBQ14160 1630 aa46.12■■■■■ 4.97
CLDND1-230ENST00000514537 SHROOM4Q9ULL8 1493 aa45.94■■■■■ 4.95
CLDND1-230ENST00000514537 EIF4G1Q04637 1599 aaKnown RBP45.28■■■■■ 4.84
CLDND1-230ENST00000514537 CC2D2AQ9P2K1 1620 aa45.2■■■■■ 4.83
CLDND1-230ENST00000514537 CECR2Q9BXF3 1484 aa45.04■■■■■ 4.8
CLDND1-230ENST00000514537 NCAPD3P42695 1498 aa44.12■■■■■ 4.65
CLDND1-230ENST00000514537 SMARCA4P51532 1647 aa44.08■■■■■ 4.65
CLDND1-230ENST00000514537 ATAD2BQ9ULI0 1458 aa44.05■■■■■ 4.64
CLDND1-230ENST00000514537 BAZ1AQ9NRL2 1556 aaPredicted RBP43.99■■■■■ 4.63
CLDND1-230ENST00000514537 SMARCA2P51531 1590 aa43.91■■■■■ 4.62
CLDND1-230ENST00000514537 HMGXB3Q12766 1538 aa43.77■■■■■ 4.6
CLDND1-230ENST00000514537 MROH2BQ7Z745 1585 aa43.73■■■■■ 4.59
CLDND1-230ENST00000514537 PEG3Q9GZU2 1588 aa43.69■■■■■ 4.58
CLDND1-230ENST00000514537 BAZ1BQ9UIG0 1483 aaKnown RBP43.62■■■■■ 4.57
CLDND1-230ENST00000514537 WIZO95785 1651 aa43.17■■■■■ 4.5
CLDND1-230ENST00000514537 NESP48681 1621 aa43.16■■■■■ 4.5
CLDND1-230ENST00000514537 ERCC6Q03468 1493 aa43.15■■■■■ 4.5
CLDND1-230ENST00000514537 RSF1Q96T23 1441 aaPredicted RBP43.1■■■■■ 4.49
CLDND1-230ENST00000514537 LAMC3Q9Y6N6 1575 aa42.94■■■■■ 4.46
CLDND1-230ENST00000514537 CUX2O14529 1486 aa42.89■■■■■ 4.46
CLDND1-230ENST00000514537 CADPSQ9ULU8 1353 aa42.82■■■■■ 4.45
CLDND1-230ENST00000514537 PDS5BQ9NTI5 1447 aa42.75■■■■■ 4.43
CLDND1-230ENST00000514537 TOP2AP11388 1531 aaKnown RBP42.71■■■■■ 4.43
CLDND1-230ENST00000514537 THOC2Q8NI27 1593 aaKnown RBP42.55■■■■■ 4.4
CLDND1-230ENST00000514537 KIF21AQ7Z4S6 1674 aa42.51■■■■■ 4.4
CLDND1-230ENST00000514537 CFTRP13569 1480 aa42.43■■■■■ 4.38
CLDND1-230ENST00000514537 MRC2Q9UBG0 1479 aa42.3■■■■■ 4.36
CLDND1-230ENST00000514537 FANCD2Q9BXW9 1451 aa42.28■■■■■ 4.36
CLDND1-230ENST00000514537 CCDC88BA6NC98 1476 aa42.27■■■■■ 4.36
CLDND1-230ENST00000514537 DNAJC5Q9H3Z4 198 aa42.25■■■■■ 4.35
CLDND1-230ENST00000514537 CEP164Q9UPV0 1460 aa42.24■■■■■ 4.35
CLDND1-230ENST00000514537 WDR62O43379 1518 aa42.15■■■■■ 4.34
CLDND1-230ENST00000514537 URB2Q14146 1524 aaKnown RBP41.89■■■■■ 4.3
CLDND1-230ENST00000514537 PRDM2Q13029 1718 aa41.85■■■■■ 4.29
CLDND1-230ENST00000514537 SUPT5HO00267 1087 aaKnown RBP41.66■■■■■ 4.26
CLDND1-230ENST00000514537 TOPBP1Q92547 1522 aa41.54■■■■■ 4.24
CLDND1-230ENST00000514537 ABCC8Q09428 1581 aa41.51■■■■■ 4.24
CLDND1-230ENST00000514537 IFT140Q96RY7 1462 aa41.41■■■■■ 4.22
CLDND1-230ENST00000514537 DNMBPQ6XZF7 1577 aa41.41■■■■■ 4.22
CLDND1-230ENST00000514537 ZNF608Q9ULD9 1512 aaPredicted RBP41.28■■■■■ 4.2
CLDND1-230ENST00000514537 POLA1P09884 1462 aaPredicted RBP41.15■■■■■ 4.18
CLDND1-230ENST00000514537 OSCARQ8IYS5 282 aa41.12■■■■■ 4.17
CLDND1-230ENST00000514537 TARBP1Q13395 1621 aaKnown RBP41.08■■■■■ 4.17
CLDND1-230ENST00000514537 CUX1P39880 1505 aa41.04■■■■■ 4.16
CLDND1-230ENST00000514537 SOGA1O94964 1423 aa41.02■■■■■ 4.16
CLDND1-230ENST00000514537 RAD54L2Q9Y4B4 1467 aa41.01■■■■■ 4.16
CLDND1-230ENST00000514537 AQRO60306 1485 aaKnown RBP eCLIP41■■■■■ 4.151e-6■■■■□ 26.1
CLDND1-230ENST00000514537 EIF4G3O43432 1585 aaKnown RBP40.99■■■■■ 4.15
CLDND1-230ENST00000514537 FGD5Q6ZNL6 1462 aa40.98■■■■■ 4.15
CLDND1-230ENST00000514537 TDRD9Q8NDG6 1382 aaKnown RBP40.86■■■■■ 4.13
CLDND1-230ENST00000514537 WDR97A6NE52 1622 aa40.71■■■■■ 4.11
CLDND1-230ENST00000514537 WRNQ14191 1432 aaPredicted RBP eCLIP40.62■■■■■ 4.09
CLDND1-230ENST00000514537 FBLN2P98095 1184 aa40.62■■■■■ 4.09
CLDND1-230ENST00000514537 TRIM41Q8WV44 630 aa40.6■■■■■ 4.09
CLDND1-230ENST00000514537 ABCA10Q8WWZ4 1543 aa40.57■■■■■ 4.09
CLDND1-230ENST00000514537 GRIN2BQ13224 1484 aa40.57■■■■■ 4.08
CLDND1-230ENST00000514537 SNAPC4Q5SXM2 1469 aa40.56■■■■■ 4.08
CLDND1-230ENST00000514537 CHD1O14646 1710 aa40.52■■■■■ 4.08
CLDND1-230ENST00000514537 TOP2BQ02880 1626 aa40.52■■■■■ 4.08
CLDND1-230ENST00000514537 GAPVD1Q14C86 1478 aa40.51■■■■■ 4.07
CLDND1-230ENST00000514537 MAGI1Q96QZ7 1491 aaPredicted RBP40.5■■■■■ 4.07
CLDND1-230ENST00000514537 BIVM-ERCC5R4GMW8 1640 aa40.49■■■■■ 4.07
CLDND1-230ENST00000514537 SYNJ1O43426 1573 aa40.48■■■■■ 4.07
CLDND1-230ENST00000514537 CHMP7Q8WUX9 453 aaPredicted RBP40.45■■■■■ 4.07
CLDND1-230ENST00000514537 ABCA5Q8WWZ7 1642 aa40.38■■■■■ 4.06
CLDND1-230ENST00000514537 RIMBP3CA6NJZ7 1639 aa40.37■■■■■ 4.05
CLDND1-230ENST00000514537 RIMBP3BA6NNM3 1639 aa40.37■■■■■ 4.05
CLDND1-230ENST00000514537 RIMBP3Q9UFD9 1639 aa40.37■■■■■ 4.05
CLDND1-230ENST00000514537 SYNJ2O15056 1496 aa40.36■■■■■ 4.05
CLDND1-230ENST00000514537 ARHGEF11O15085 1522 aa40.35■■■■■ 4.05
CLDND1-230ENST00000514537 PBRM1Q86U86 1689 aa40.31■■■■■ 4.04
CLDND1-230ENST00000514537 CLASP1Q7Z460 1538 aa40.17■■■■■ 4.02
CLDND1-230ENST00000514537 CYB5RLQ6IPT4 315 aa40.09■■■■■ 4.01
CLDND1-230ENST00000514537 ERICH3Q5RHP9 1530 aa40.06■■■■■ 4
CLDND1-230ENST00000514537 FHAD1B1AJZ9 1412 aa40.04■■■■■ 4
CLDND1-230ENST00000514537 ADAMTS12P58397 1594 aa40.04■■■■■ 4
CLDND1-230ENST00000514537 GRIN2AQ12879 1464 aa40.03■■■■■ 4
CLDND1-230ENST00000514537 ARAP1Q96P48 1450 aa40.01■■■■■ 4
CLDND1-230ENST00000514537 NUP160Q12769 1436 aa39.91■■■■□ 3.98
CLDND1-230ENST00000514537 CEP170Q5SW79 1584 aa39.82■■■■□ 3.97
CLDND1-230ENST00000514537 KIF27Q86VH2 1401 aa39.82■■■■□ 3.96
CLDND1-230ENST00000514537 IGF1RP08069 1367 aa39.78■■■■□ 3.96
CLDND1-230ENST00000514537 ERCC6L2Q5T890 1561 aa39.59■■■■□ 3.93
CLDND1-230ENST00000514537 SHROOM2Q13796 1616 aa39.58■■■■□ 3.93
CLDND1-230ENST00000514537 JPH4Q96JJ6 628 aa39.56■■■■□ 3.92
CLDND1-230ENST00000514537 CUL7Q14999 1698 aa39.53■■■■□ 3.92
CLDND1-230ENST00000514537 CARMIL1Q5VZK9 1371 aa39.5■■■■□ 3.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms