RNA–Protein interactions for RNA: ENST00000508017.5

SNCAIP-209, Transcript of synuclein alpha interacting protein, humanhuman

TSL 1 (best)

Gene SNCAIP, Length 2,410 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAIP-209ENST00000508017 NISCHQ9Y2I1 1504 aa26.93■■□□□ 1.9
SNCAIP-209ENST00000508017 SHROOM4Q9ULL8 1493 aa23.37■■□□□ 1.33
SNCAIP-209ENST00000508017 SUPT5HO00267 1087 aaKnown RBP23.04■■□□□ 1.28
SNCAIP-209ENST00000508017 ZCCHC6Q5VYS8 1495 aaKnown RBP22.85■■□□□ 1.25
SNCAIP-209ENST00000508017 CCDC180Q9P1Z9 1646 aa22.69■■□□□ 1.22
SNCAIP-209ENST00000508017 MYO15BQ96JP2 1530 aa22.63■■□□□ 1.21
SNCAIP-209ENST00000508017 CHIC1Q5VXU3 224 aa22.53■■□□□ 1.2
SNCAIP-209ENST00000508017 HRCP23327 699 aa22.43■■□□□ 1.18
SNCAIP-209ENST00000508017 DCAF8L2P0C7V8 631 aa22.34■■□□□ 1.17
SNCAIP-209ENST00000508017 PCGF6Q9BYE7 350 aa22.23■■□□□ 1.15
SNCAIP-209ENST00000508017 PPARGC1BQ86YN6 1023 aaKnown RBP22.04■■□□□ 1.12
SNCAIP-209ENST00000508017 DCAF1Q9Y4B6 1507 aa22.01■■□□□ 1.11
SNCAIP-209ENST00000508017 LOC105371045A0A1W2PR82 267 aa21.96■■□□□ 1.11
SNCAIP-209ENST00000508017 ABCC9O60706 1549 aa21.65■■□□□ 1.06
SNCAIP-209ENST00000508017 TRIM26Q12899 539 aaPredicted RBP21.65■■□□□ 1.06
SNCAIP-209ENST00000508017 RSF1Q96T23 1441 aaPredicted RBP21.48■■□□□ 1.03
SNCAIP-209ENST00000508017 SCRIBQ14160 1630 aa21.46■■□□□ 1.03
SNCAIP-209ENST00000508017 RB1CC1Q8TDY2 1594 aa21.37■■□□□ 1.01
SNCAIP-209ENST00000508017 TRIM41Q8WV44 630 aa21.37■■□□□ 1.01
SNCAIP-209ENST00000508017 FAM9AQ8IZU1 332 aaPredicted RBP21.31■■□□□ 1
SNCAIP-209ENST00000508017 ZEB1P37275 1124 aaPredicted RBP21.26■□□□□ 0.99
SNCAIP-209ENST00000508017 EHMT2Q96KQ7 1210 aa21.2■□□□□ 0.98
SNCAIP-209ENST00000508017 CECR2Q9BXF3 1484 aa21.07■□□□□ 0.96
SNCAIP-209ENST00000508017 MROH2BQ7Z745 1585 aa21.02■□□□□ 0.96
SNCAIP-209ENST00000508017 SCAF1Q9H7N4 1312 aaKnown RBP20.96■□□□□ 0.95
SNCAIP-209ENST00000508017 WIZO95785 1651 aa20.96■□□□□ 0.95
SNCAIP-209ENST00000508017 NACADO15069 1562 aa20.88■□□□□ 0.93
SNCAIP-209ENST00000508017 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.8■□□□□ 0.92
SNCAIP-209ENST00000508017 EIF4G1Q04637 1599 aaKnown RBP20.79■□□□□ 0.92
SNCAIP-209ENST00000508017 BAZ1AQ9NRL2 1556 aaPredicted RBP20.78■□□□□ 0.92
SNCAIP-209ENST00000508017 PELP1Q8IZL8 1130 aaKnown RBP20.76■□□□□ 0.91
SNCAIP-209ENST00000508017 CCER1Q8TC90 406 aaPredicted RBP20.72■□□□□ 0.91
SNCAIP-209ENST00000508017 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
SNCAIP-209ENST00000508017 TTBK1Q5TCY1 1321 aaPredicted RBP20.6■□□□□ 0.89
SNCAIP-209ENST00000508017 CCDC88BA6NC98 1476 aa20.59■□□□□ 0.89
SNCAIP-209ENST00000508017 ACIN1Q9UKV3 1341 aaKnown RBP20.58■□□□□ 0.88
SNCAIP-209ENST00000508017 NEUROD1Q13562 356 aa20.56■□□□□ 0.88
SNCAIP-209ENST00000508017 TOP2AP11388 1531 aaKnown RBP20.54■□□□□ 0.88
SNCAIP-209ENST00000508017 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
SNCAIP-209ENST00000508017 CEP162Q5TB80 1403 aa20.52■□□□□ 0.88
SNCAIP-209ENST00000508017 DIEXFQ68CQ4 756 aaKnown RBP20.51■□□□□ 0.87
SNCAIP-209ENST00000508017 SOGA1O94964 1423 aa20.48■□□□□ 0.87
SNCAIP-209ENST00000508017 SMARCA2P51531 1590 aa20.48■□□□□ 0.87
SNCAIP-209ENST00000508017 SMARCA4P51532 1647 aa20.47■□□□□ 0.87
SNCAIP-209ENST00000508017 TNIKQ9UKE5 1360 aa20.41■□□□□ 0.86
SNCAIP-209ENST00000508017 RUSC2Q8N2Y8 1516 aa20.4■□□□□ 0.86
SNCAIP-209ENST00000508017 GTF3C3Q9Y5Q9 886 aa20.38■□□□□ 0.85
SNCAIP-209ENST00000508017 CENPBP07199 599 aaPredicted RBP20.34■□□□□ 0.85
SNCAIP-209ENST00000508017 UNC13AQ9UPW8 1703 aa20.33■□□□□ 0.85
SNCAIP-209ENST00000508017 CSRNP3Q8WYN3 585 aa20.33■□□□□ 0.84
SNCAIP-209ENST00000508017 UBTFP17480 764 aaKnown RBP20.32■□□□□ 0.84
SNCAIP-209ENST00000508017 EEA1Q15075 1411 aa20.29■□□□□ 0.84
SNCAIP-209ENST00000508017 GOLGA3Q08378 1498 aa20.25■□□□□ 0.83
SNCAIP-209ENST00000508017 ZNF316A6NFI3 1004 aaPredicted RBP20.24■□□□□ 0.83
SNCAIP-209ENST00000508017 HNRNPUL2Q1KMD3 747 aaKnown RBP20.13■□□□□ 0.81
SNCAIP-209ENST00000508017 YTHDC1Q96MU7 727 aaKnown RBP20.12■□□□□ 0.81
SNCAIP-209ENST00000508017 SYNJ1O43426 1573 aa20.1■□□□□ 0.81
SNCAIP-209ENST00000508017 CEP164Q9UPV0 1460 aa20.07■□□□□ 0.8
SNCAIP-209ENST00000508017 KIF21BO75037 1637 aa20.07■□□□□ 0.8
SNCAIP-209ENST00000508017 MIER1Q8N108 512 aa20.06■□□□□ 0.8
SNCAIP-209ENST00000508017 CLIP1P30622 1438 aa20.05■□□□□ 0.8
SNCAIP-209ENST00000508017 PABPN1Q86U42 306 aaKnown RBP eCLIP20.04■□□□□ 0.8
SNCAIP-209ENST00000508017 BICRAQ9NZM4 1560 aa20.01■□□□□ 0.79
SNCAIP-209ENST00000508017 VPS8Q8N3P4 1428 aa19.99■□□□□ 0.79
SNCAIP-209ENST00000508017 PEG3Q9GZU2 1588 aa19.99■□□□□ 0.79
SNCAIP-209ENST00000508017 RAPGEF2Q9Y4G8 1499 aa19.95■□□□□ 0.78
SNCAIP-209ENST00000508017 RANGAP1P46060 587 aaPredicted RBP19.93■□□□□ 0.78
SNCAIP-209ENST00000508017 BAZ1BQ9UIG0 1483 aaKnown RBP19.92■□□□□ 0.78
SNCAIP-209ENST00000508017 APLP2Q06481 763 aa19.88■□□□□ 0.77
SNCAIP-209ENST00000508017 ATAD2BQ9ULI0 1458 aa19.84■□□□□ 0.77
SNCAIP-209ENST00000508017 TOP2BQ02880 1626 aa19.76■□□□□ 0.75
SNCAIP-209ENST00000508017 DHX57Q6P158 1386 aaKnown RBP19.75■□□□□ 0.75
SNCAIP-209ENST00000508017 MYT1Q01538 1121 aa19.74■□□□□ 0.75
SNCAIP-209ENST00000508017 ARAP1Q96P48 1450 aa19.72■□□□□ 0.75
SNCAIP-209ENST00000508017 BIVM-ERCC5R4GMW8 1640 aa19.69■□□□□ 0.74
SNCAIP-209ENST00000508017 KANK4Q5T7N3 995 aaPredicted RBP19.68■□□□□ 0.74
SNCAIP-209ENST00000508017 CLSPNQ9HAW4 1339 aa19.67■□□□□ 0.74
SNCAIP-209ENST00000508017 PRXQ9BXM0 1461 aa19.66■□□□□ 0.74
SNCAIP-209ENST00000508017 ERICH3Q5RHP9 1530 aa19.66■□□□□ 0.74
SNCAIP-209ENST00000508017 RRBP1Q9P2E9 1410 aaKnown RBP19.57■□□□□ 0.72
SNCAIP-209ENST00000508017 SUPT16HQ9Y5B9 1047 aaKnown RBP19.54■□□□□ 0.72
SNCAIP-209ENST00000508017 CUX1P39880 1505 aa19.53■□□□□ 0.72
SNCAIP-209ENST00000508017 CUX2O14529 1486 aa19.5■□□□□ 0.71
SNCAIP-209ENST00000508017 CCNB3Q8WWL7 1395 aa19.48■□□□□ 0.71
SNCAIP-209ENST00000508017 ITGAEP38570 1179 aa19.48■□□□□ 0.71
SNCAIP-209ENST00000508017 ARHGAP35Q9NRY4 1499 aa19.47■□□□□ 0.71
SNCAIP-209ENST00000508017 KIF27Q86VH2 1401 aa19.47■□□□□ 0.71
SNCAIP-209ENST00000508017 KCNH8Q96L42 1107 aa19.4■□□□□ 0.7
SNCAIP-209ENST00000508017 MAPKBP1O60336 1514 aa19.39■□□□□ 0.69
SNCAIP-209ENST00000508017 RAB3GAP2Q9H2M9 1393 aa19.38■□□□□ 0.69
SNCAIP-209ENST00000508017 HMGXB3Q12766 1538 aa19.36■□□□□ 0.69
SNCAIP-209ENST00000508017 NCAPD3P42695 1498 aa19.34■□□□□ 0.69
SNCAIP-209ENST00000508017 TIAM1Q13009 1591 aa19.32■□□□□ 0.68
SNCAIP-209ENST00000508017 TSHZ2Q9NRE2 1034 aa19.32■□□□□ 0.68
SNCAIP-209ENST00000508017 CFTRP13569 1480 aa19.31■□□□□ 0.68
SNCAIP-209ENST00000508017 WDR97A6NE52 1622 aa19.27■□□□□ 0.67
SNCAIP-209ENST00000508017 SETD5Q9C0A6 1442 aa19.26■□□□□ 0.67
SNCAIP-209ENST00000508017 IGF1RP08069 1367 aa19.25■□□□□ 0.67
SNCAIP-209ENST00000508017 SIN3AQ96ST3 1273 aa19.24■□□□□ 0.67
SNCAIP-209ENST00000508017 PHLDB1Q86UU1 1377 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms