RNA–Protein interactions for RNA: ENST00000506896.1

SNX25-204, Transcript of sorting nexin 25, humanhuman

TSL 2

Gene SNX25, Length 518 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX25-204ENST00000506896 NISCHQ9Y2I1 1504 aa48.19■■■■■ 5.31
SNX25-204ENST00000506896 CCDC180Q9P1Z9 1646 aa42.96■■■■■ 4.47
SNX25-204ENST00000506896 ABCC9O60706 1549 aa42.32■■■■■ 4.37
SNX25-204ENST00000506896 RB1CC1Q8TDY2 1594 aa40.57■■■■■ 4.09
SNX25-204ENST00000506896 NACADO15069 1562 aa40.48■■■■■ 4.07
SNX25-204ENST00000506896 DCAF8L2P0C7V8 631 aa40.35■■■■■ 4.05
SNX25-204ENST00000506896 MYO15BQ96JP2 1530 aa40.17■■■■■ 4.02
SNX25-204ENST00000506896 ZCCHC6Q5VYS8 1495 aaKnown RBP40.06■■■■■ 4
SNX25-204ENST00000506896 DCAF1Q9Y4B6 1507 aa39.87■■■■□ 3.97
SNX25-204ENST00000506896 UNC13AQ9UPW8 1703 aa39.72■■■■□ 3.95
SNX25-204ENST00000506896 PABPN1Q86U42 306 aaKnown RBP eCLIP39.52■■■■□ 3.92
SNX25-204ENST00000506896 BICRAQ9NZM4 1560 aa39.43■■■■□ 3.9
SNX25-204ENST00000506896 DNAJC5BQ9UF47 199 aa39.26■■■■□ 3.88
SNX25-204ENST00000506896 SCRIBQ14160 1630 aa39.13■■■■□ 3.85
SNX25-204ENST00000506896 SHROOM4Q9ULL8 1493 aa38.92■■■■□ 3.82
SNX25-204ENST00000506896 EIF4G1Q04637 1599 aaKnown RBP38.36■■■■□ 3.73
SNX25-204ENST00000506896 CC2D2AQ9P2K1 1620 aa38.3■■■■□ 3.72
SNX25-204ENST00000506896 CECR2Q9BXF3 1484 aa38.07■■■■□ 3.68
SNX25-204ENST00000506896 SMARCA4P51532 1647 aa37.44■■■■□ 3.58
SNX25-204ENST00000506896 NCAPD3P42695 1498 aa37.39■■■■□ 3.58
SNX25-204ENST00000506896 ATAD2BQ9ULI0 1458 aa37.34■■■■□ 3.57
SNX25-204ENST00000506896 BAZ1AQ9NRL2 1556 aaPredicted RBP37.34■■■■□ 3.57
SNX25-204ENST00000506896 SMARCA2P51531 1590 aa37.25■■■■□ 3.55
SNX25-204ENST00000506896 MROH2BQ7Z745 1585 aa37.13■■■■□ 3.53
SNX25-204ENST00000506896 HMGXB3Q12766 1538 aa37.13■■■■□ 3.53
SNX25-204ENST00000506896 PEG3Q9GZU2 1588 aa37.12■■■■□ 3.53
SNX25-204ENST00000506896 BAZ1BQ9UIG0 1483 aaKnown RBP36.96■■■■□ 3.51
SNX25-204ENST00000506896 WIZO95785 1651 aa36.71■■■■□ 3.47
SNX25-204ENST00000506896 RSF1Q96T23 1441 aaPredicted RBP36.6■■■■□ 3.45
SNX25-204ENST00000506896 NESP48681 1621 aa36.56■■■■□ 3.44
SNX25-204ENST00000506896 ERCC6Q03468 1493 aa36.46■■■■□ 3.43
SNX25-204ENST00000506896 LAMC3Q9Y6N6 1575 aa36.41■■■■□ 3.42
SNX25-204ENST00000506896 TOP2AP11388 1531 aaKnown RBP36.28■■■■□ 3.4
SNX25-204ENST00000506896 CADPSQ9ULU8 1353 aa36.27■■■■□ 3.4
SNX25-204ENST00000506896 CUX2O14529 1486 aa36.24■■■■□ 3.39
SNX25-204ENST00000506896 PDS5BQ9NTI5 1447 aa36.17■■■■□ 3.38
SNX25-204ENST00000506896 KIF21AQ7Z4S6 1674 aa36.11■■■■□ 3.37
SNX25-204ENST00000506896 THOC2Q8NI27 1593 aaKnown RBP36.06■■■■□ 3.36
SNX25-204ENST00000506896 CFTRP13569 1480 aa35.99■■■■□ 3.35
SNX25-204ENST00000506896 CCDC88BA6NC98 1476 aa35.89■■■■□ 3.34
SNX25-204ENST00000506896 FANCD2Q9BXW9 1451 aa35.81■■■■□ 3.32
SNX25-204ENST00000506896 MRC2Q9UBG0 1479 aa35.8■■■■□ 3.32
SNX25-204ENST00000506896 CEP164Q9UPV0 1460 aa35.78■■■■□ 3.32
SNX25-204ENST00000506896 WDR62O43379 1518 aa35.72■■■■□ 3.31
SNX25-204ENST00000506896 SUPT5HO00267 1087 aaKnown RBP35.7■■■■□ 3.31
SNX25-204ENST00000506896 PRDM2Q13029 1718 aa35.66■■■■□ 3.3
SNX25-204ENST00000506896 DNAJC5Q9H3Z4 198 aa35.59■■■■□ 3.29
SNX25-204ENST00000506896 URB2Q14146 1524 aaKnown RBP35.5■■■■□ 3.27
SNX25-204ENST00000506896 TOPBP1Q92547 1522 aa35.22■■■■□ 3.23
SNX25-204ENST00000506896 ABCC8Q09428 1581 aa35.2■■■■□ 3.23
SNX25-204ENST00000506896 DNMBPQ6XZF7 1577 aa35.13■■■■□ 3.21
SNX25-204ENST00000506896 IFT140Q96RY7 1462 aa35.06■■■■□ 3.2
SNX25-204ENST00000506896 ZNF608Q9ULD9 1512 aaPredicted RBP34.96■■■■□ 3.19
SNX25-204ENST00000506896 POLA1P09884 1462 aaPredicted RBP34.9■■■■□ 3.18
SNX25-204ENST00000506896 TARBP1Q13395 1621 aaKnown RBP34.88■■■■□ 3.17
SNX25-204ENST00000506896 CUX1P39880 1505 aa34.84■■■■□ 3.17
SNX25-204ENST00000506896 EIF4G3O43432 1585 aaKnown RBP34.76■■■■□ 3.16
SNX25-204ENST00000506896 SOGA1O94964 1423 aa34.76■■■■□ 3.16
SNX25-204ENST00000506896 RAD54L2Q9Y4B4 1467 aa34.76■■■■□ 3.15
SNX25-204ENST00000506896 FGD5Q6ZNL6 1462 aa34.75■■■■□ 3.15
SNX25-204ENST00000506896 AQRO60306 1485 aaKnown RBP eCLIP34.72■■■■□ 3.15
SNX25-204ENST00000506896 OSCARQ8IYS5 282 aa34.72■■■■□ 3.15
SNX25-204ENST00000506896 TDRD9Q8NDG6 1382 aaKnown RBP34.61■■■■□ 3.13
SNX25-204ENST00000506896 WDR97A6NE52 1622 aa34.55■■■■□ 3.12
SNX25-204ENST00000506896 WRNQ14191 1432 aaPredicted RBP eCLIP34.49■■■■□ 3.11
SNX25-204ENST00000506896 BIVM-ERCC5R4GMW8 1640 aa34.46■■■■□ 3.11
SNX25-204ENST00000506896 TOP2BQ02880 1626 aa34.45■■■■□ 3.11
SNX25-204ENST00000506896 ABCA10Q8WWZ4 1543 aa34.43■■■■□ 3.1
SNX25-204ENST00000506896 SYNJ1O43426 1573 aa34.42■■■■□ 3.1
SNX25-204ENST00000506896 CHD1O14646 1710 aa34.41■■■■□ 3.1
SNX25-204ENST00000506896 GRIN2BQ13224 1484 aa34.37■■■■□ 3.09
SNX25-204ENST00000506896 SNAPC4Q5SXM2 1469 aa34.35■■■■□ 3.09
SNX25-204ENST00000506896 GAPVD1Q14C86 1478 aa34.33■■■■□ 3.09
SNX25-204ENST00000506896 FBLN2P98095 1184 aa34.32■■■■□ 3.08
SNX25-204ENST00000506896 MAGI1Q96QZ7 1491 aaPredicted RBP34.31■■■■□ 3.08
SNX25-204ENST00000506896 ABCA5Q8WWZ7 1642 aa34.3■■■■□ 3.08
SNX25-204ENST00000506896 PBRM1Q86U86 1689 aa34.27■■■■□ 3.08
SNX25-204ENST00000506896 CHMP7Q8WUX9 453 aaPredicted RBP34.21■■■■□ 3.07
SNX25-204ENST00000506896 SYNJ2O15056 1496 aa34.19■■■■□ 3.06
SNX25-204ENST00000506896 RIMBP3CA6NJZ7 1639 aa34.17■■■■□ 3.06
SNX25-204ENST00000506896 RIMBP3BA6NNM3 1639 aa34.17■■■■□ 3.06
SNX25-204ENST00000506896 TRIM41Q8WV44 630 aa34.17■■■■□ 3.06
SNX25-204ENST00000506896 RIMBP3Q9UFD9 1639 aa34.17■■■■□ 3.06
SNX25-204ENST00000506896 ARHGEF11O15085 1522 aa34.13■■■■□ 3.05
SNX25-204ENST00000506896 CLASP1Q7Z460 1538 aa34.04■■■■□ 3.04
SNX25-204ENST00000506896 ERICH3Q5RHP9 1530 aa33.99■■■■□ 3.03
SNX25-204ENST00000506896 ADAMTS12P58397 1594 aa33.97■■■■□ 3.03
SNX25-204ENST00000506896 FHAD1B1AJZ9 1412 aa33.93■■■■□ 3.02
SNX25-204ENST00000506896 GRIN2AQ12879 1464 aa33.93■■■■□ 3.02
SNX25-204ENST00000506896 CYB5RLQ6IPT4 315 aa33.85■■■■□ 3.01
SNX25-204ENST00000506896 ARAP1Q96P48 1450 aa33.84■■■■□ 3.01
SNX25-204ENST00000506896 NUP160Q12769 1436 aa33.82■■■■□ 3
SNX25-204ENST00000506896 KIF27Q86VH2 1401 aa33.79■■■■□ 3
SNX25-204ENST00000506896 CEP170Q5SW79 1584 aa33.78■■■■□ 3
SNX25-204ENST00000506896 IGF1RP08069 1367 aa33.75■■■□□ 2.99
SNX25-204ENST00000506896 SHROOM2Q13796 1616 aa33.61■■■□□ 2.97
SNX25-204ENST00000506896 CUL7Q14999 1698 aa33.6■■■□□ 2.97
SNX25-204ENST00000506896 ERCC6L2Q5T890 1561 aa33.56■■■□□ 2.96
SNX25-204ENST00000506896 CARMIL1Q5VZK9 1371 aa33.51■■■□□ 2.96
SNX25-204ENST00000506896 JPH4Q96JJ6 628 aa33.5■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 892 ms