RNA–Protein interactions for RNA: ENST00000505065.1

CDC42SE2-208, Transcript of CDC42 small effector 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42SE2, Length 4,352 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE2-208ENST00000505065 NISCHQ9Y2I1 1504 aa20.67■□□□□ 0.9
CDC42SE2-208ENST00000505065 CCDC180Q9P1Z9 1646 aa18.58■□□□□ 0.57
CDC42SE2-208ENST00000505065 MYO15BQ96JP2 1530 aa17.4■□□□□ 0.38
CDC42SE2-208ENST00000505065 DCAF1Q9Y4B6 1507 aa17.38■□□□□ 0.37
CDC42SE2-208ENST00000505065 ZCCHC6Q5VYS8 1495 aaKnown RBP17.36■□□□□ 0.37
CDC42SE2-208ENST00000505065 ABCC9O60706 1549 aa17.27■□□□□ 0.36
CDC42SE2-208ENST00000505065 NACADO15069 1562 aa17.2■□□□□ 0.34
CDC42SE2-208ENST00000505065 RB1CC1Q8TDY2 1594 aa17.07■□□□□ 0.32
CDC42SE2-208ENST00000505065 UNC13AQ9UPW8 1703 aa17.01■□□□□ 0.31
CDC42SE2-208ENST00000505065 BICRAQ9NZM4 1560 aa16.71■□□□□ 0.27
CDC42SE2-208ENST00000505065 SHROOM4Q9ULL8 1493 aa16.67■□□□□ 0.26
CDC42SE2-208ENST00000505065 SCRIBQ14160 1630 aa16.53■□□□□ 0.24
CDC42SE2-208ENST00000505065 DCAF8L2P0C7V8 631 aa16.19■□□□□ 0.18
CDC42SE2-208ENST00000505065 PEG3Q9GZU2 1588 aa16.1■□□□□ 0.17
CDC42SE2-208ENST00000505065 EIF4G1Q04637 1599 aaKnown RBP16.09■□□□□ 0.17
CDC42SE2-208ENST00000505065 SMARCA4P51532 1647 aa16.05■□□□□ 0.16
CDC42SE2-208ENST00000505065 BAZ1AQ9NRL2 1556 aaPredicted RBP15.99■□□□□ 0.15
CDC42SE2-208ENST00000505065 PABPN1Q86U42 306 aaKnown RBP eCLIP15.95■□□□□ 0.14
CDC42SE2-208ENST00000505065 CC2D2AQ9P2K1 1620 aa15.94■□□□□ 0.14
CDC42SE2-208ENST00000505065 CECR2Q9BXF3 1484 aa15.92■□□□□ 0.14
CDC42SE2-208ENST00000505065 HMGXB3Q12766 1538 aa15.87■□□□□ 0.13
CDC42SE2-208ENST00000505065 MROH2BQ7Z745 1585 aa15.86■□□□□ 0.13
CDC42SE2-208ENST00000505065 SMARCA2P51531 1590 aa15.83■□□□□ 0.12
CDC42SE2-208ENST00000505065 NCAPD3P42695 1498 aa15.79■□□□□ 0.12
CDC42SE2-208ENST00000505065 ATAD2BQ9ULI0 1458 aa15.77■□□□□ 0.11
CDC42SE2-208ENST00000505065 WIZO95785 1651 aa15.75■□□□□ 0.11
CDC42SE2-208ENST00000505065 RSF1Q96T23 1441 aaPredicted RBP15.72■□□□□ 0.11
CDC42SE2-208ENST00000505065 TOP2AP11388 1531 aaKnown RBP15.66■□□□□ 0.1
CDC42SE2-208ENST00000505065 DNAJC5BQ9UF47 199 aa15.62■□□□□ 0.09
CDC42SE2-208ENST00000505065 PRDM2Q13029 1718 aa15.59■□□□□ 0.09
CDC42SE2-208ENST00000505065 BAZ1BQ9UIG0 1483 aaKnown RBP15.54■□□□□ 0.08
CDC42SE2-208ENST00000505065 LAMC3Q9Y6N6 1575 aa15.4■□□□□ 0.06
CDC42SE2-208ENST00000505065 CCDC88BA6NC98 1476 aa15.32■□□□□ 0.04
CDC42SE2-208ENST00000505065 CFTRP13569 1480 aa15.29■□□□□ 0.04
CDC42SE2-208ENST00000505065 KIF21AQ7Z4S6 1674 aa15.25■□□□□ 0.03
CDC42SE2-208ENST00000505065 THOC2Q8NI27 1593 aaKnown RBP15.21■□□□□ 0.03
CDC42SE2-208ENST00000505065 CADPSQ9ULU8 1353 aa15.16■□□□□ 0.02
CDC42SE2-208ENST00000505065 NESP48681 1621 aa15.13■□□□□ 0.01
CDC42SE2-208ENST00000505065 WDR62O43379 1518 aa15.09■□□□□ 0.01
CDC42SE2-208ENST00000505065 BIVM-ERCC5R4GMW8 1640 aa15.06■□□□□ 0
CDC42SE2-208ENST00000505065 WDR97A6NE52 1622 aa15.01□□□□□ -0.01
CDC42SE2-208ENST00000505065 PDS5BQ9NTI5 1447 aa15.01□□□□□ -0.01
CDC42SE2-208ENST00000505065 FANCD2Q9BXW9 1451 aa15□□□□□ -0.01
CDC42SE2-208ENST00000505065 DNMBPQ6XZF7 1577 aa14.98□□□□□ -0.01
CDC42SE2-208ENST00000505065 MRC2Q9UBG0 1479 aa14.96□□□□□ -0.01
CDC42SE2-208ENST00000505065 CEP164Q9UPV0 1460 aa14.96□□□□□ -0.01
CDC42SE2-208ENST00000505065 URB2Q14146 1524 aaKnown RBP14.95□□□□□ -0.02
CDC42SE2-208ENST00000505065 TOP2BQ02880 1626 aa14.94□□□□□ -0.02
CDC42SE2-208ENST00000505065 CUX2O14529 1486 aa14.93□□□□□ -0.02
CDC42SE2-208ENST00000505065 ABCC8Q09428 1581 aa14.92□□□□□ -0.02
CDC42SE2-208ENST00000505065 CUX1P39880 1505 aa14.9□□□□□ -0.02
CDC42SE2-208ENST00000505065 TARBP1Q13395 1621 aaKnown RBP14.9□□□□□ -0.02
CDC42SE2-208ENST00000505065 TOPBP1Q92547 1522 aa14.88□□□□□ -0.03
CDC42SE2-208ENST00000505065 SYNJ1O43426 1573 aa14.87□□□□□ -0.03
CDC42SE2-208ENST00000505065 SUPT5HO00267 1087 aaKnown RBP14.85□□□□□ -0.03
CDC42SE2-208ENST00000505065 ERCC6Q03468 1493 aa14.79□□□□□ -0.04
CDC42SE2-208ENST00000505065 ABCA5Q8WWZ7 1642 aa14.78□□□□□ -0.04
CDC42SE2-208ENST00000505065 POLA1P09884 1462 aaPredicted RBP14.74□□□□□ -0.05
CDC42SE2-208ENST00000505065 PBRM1Q86U86 1689 aa14.71□□□□□ -0.05
CDC42SE2-208ENST00000505065 ABCA10Q8WWZ4 1543 aa14.71□□□□□ -0.06
CDC42SE2-208ENST00000505065 IFT140Q96RY7 1462 aa14.71□□□□□ -0.06
CDC42SE2-208ENST00000505065 WRNQ14191 1432 aaPredicted RBP eCLIP14.7□□□□□ -0.06
CDC42SE2-208ENST00000505065 FGD5Q6ZNL6 1462 aa14.69□□□□□ -0.06
CDC42SE2-208ENST00000505065 EIF4G3O43432 1585 aaKnown RBP14.68□□□□□ -0.06
CDC42SE2-208ENST00000505065 ERICH3Q5RHP9 1530 aa14.57□□□□□ -0.08
CDC42SE2-208ENST00000505065 CUL7Q14999 1698 aa14.55□□□□□ -0.08
CDC42SE2-208ENST00000505065 RAD54L2Q9Y4B4 1467 aa14.54□□□□□ -0.08
CDC42SE2-208ENST00000505065 ZNF608Q9ULD9 1512 aaPredicted RBP14.53□□□□□ -0.08
CDC42SE2-208ENST00000505065 ADAMTS12P58397 1594 aa14.53□□□□□ -0.08
CDC42SE2-208ENST00000505065 SOGA1O94964 1423 aa14.52□□□□□ -0.09
CDC42SE2-208ENST00000505065 CHD1O14646 1710 aa14.49□□□□□ -0.09
CDC42SE2-208ENST00000505065 MAGI1Q96QZ7 1491 aaPredicted RBP14.47□□□□□ -0.09
CDC42SE2-208ENST00000505065 GRIN2BQ13224 1484 aa14.44□□□□□ -0.1
CDC42SE2-208ENST00000505065 GAPVD1Q14C86 1478 aa14.43□□□□□ -0.1
CDC42SE2-208ENST00000505065 SHROOM2Q13796 1616 aa14.4□□□□□ -0.1
CDC42SE2-208ENST00000505065 CLASP1Q7Z460 1538 aa14.4□□□□□ -0.1
CDC42SE2-208ENST00000505065 KIF21BO75037 1637 aa14.4□□□□□ -0.1
CDC42SE2-208ENST00000505065 EEA1Q15075 1411 aa14.38□□□□□ -0.11
CDC42SE2-208ENST00000505065 AQRO60306 1485 aaKnown RBP eCLIP14.37□□□□□ -0.111e-6■■□□□ 11.4
CDC42SE2-208ENST00000505065 CTTNBP2Q8WZ74 1663 aa14.36□□□□□ -0.11
CDC42SE2-208ENST00000505065 SYNJ2O15056 1496 aa14.36□□□□□ -0.11
CDC42SE2-208ENST00000505065 SNAPC4Q5SXM2 1469 aa14.35□□□□□ -0.11
CDC42SE2-208ENST00000505065 PRXQ9BXM0 1461 aa14.35□□□□□ -0.11
CDC42SE2-208ENST00000505065 KIF27Q86VH2 1401 aa14.35□□□□□ -0.11
CDC42SE2-208ENST00000505065 RUSC2Q8N2Y8 1516 aa14.34□□□□□ -0.11
CDC42SE2-208ENST00000505065 CEP170Q5SW79 1584 aa14.33□□□□□ -0.12
CDC42SE2-208ENST00000505065 CHIC1Q5VXU3 224 aa14.33□□□□□ -0.12
CDC42SE2-208ENST00000505065 FHAD1B1AJZ9 1412 aa14.32□□□□□ -0.12
CDC42SE2-208ENST00000505065 IGF1RP08069 1367 aa14.32□□□□□ -0.12
CDC42SE2-208ENST00000505065 NUP160Q12769 1436 aa14.32□□□□□ -0.12
CDC42SE2-208ENST00000505065 GRIN2AQ12879 1464 aa14.29□□□□□ -0.12
CDC42SE2-208ENST00000505065 TDRD9Q8NDG6 1382 aaKnown RBP14.28□□□□□ -0.12
CDC42SE2-208ENST00000505065 RAPGEF2Q9Y4G8 1499 aa14.2□□□□□ -0.14
CDC42SE2-208ENST00000505065 SAMD9Q5K651 1589 aa14.19□□□□□ -0.14
CDC42SE2-208ENST00000505065 UGGT2Q9NYU1 1516 aa14.17□□□□□ -0.14
CDC42SE2-208ENST00000505065 TRIM41Q8WV44 630 aa14.15□□□□□ -0.14
CDC42SE2-208ENST00000505065 IQGAP2Q13576 1575 aa14.14□□□□□ -0.15
CDC42SE2-208ENST00000505065 KIAA0586Q9BVV6 1533 aa14.13□□□□□ -0.15
CDC42SE2-208ENST00000505065 CARMIL1Q5VZK9 1371 aa14.13□□□□□ -0.15
CDC42SE2-208ENST00000505065 RIMBP3CA6NJZ7 1639 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms