RNA–Protein interactions for RNA: ENST00000504131.6

CLCN3-204, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 5 BASIC

Gene CLCN3, Length 5,592 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-204ENST00000504131 MYT1Q01538 1121 aa11.42□□□□□ -0.58
CLCN3-204ENST00000504131 PELP1Q8IZL8 1130 aaKnown RBP11.24□□□□□ -0.61
CLCN3-204ENST00000504131 SLC24A1O60721 1099 aa10.93□□□□□ -0.66
CLCN3-204ENST00000504131 ERICH6Q7L0X2 663 aa10.81□□□□□ -0.68
CLCN3-204ENST00000504131 TTBK1Q5TCY1 1321 aaPredicted RBP10.78□□□□□ -0.68
CLCN3-204ENST00000504131 RANGAP1P46060 587 aaPredicted RBP10.3□□□□□ -0.76
CLCN3-204ENST00000504131 EHMT2Q96KQ7 1210 aa10.26□□□□□ -0.77
CLCN3-204ENST00000504131 PRKCSHP14314 528 aaPredicted RBP10.08□□□□□ -0.8
CLCN3-204ENST00000504131 DAXXQ9UER7 740 aaPredicted RBP10.06□□□□□ -0.8
CLCN3-204ENST00000504131 EIF5BO60841 1220 aaKnown RBP10.05□□□□□ -0.8
CLCN3-204ENST00000504131 CENPBP07199 599 aaPredicted RBP9.85□□□□□ -0.83
CLCN3-204ENST00000504131 NISCHQ9Y2I1 1504 aa9.83□□□□□ -0.84
CLCN3-204ENST00000504131 BCL11AQ9H165 835 aa9.8□□□□□ -0.84
CLCN3-204ENST00000504131 APLP2Q06481 763 aa9.68□□□□□ -0.86
CLCN3-204ENST00000504131 PODXL2Q9NZ53 605 aa9.58□□□□□ -0.88
CLCN3-204ENST00000504131 NEFLP07196 543 aa9.53□□□□□ -0.88
CLCN3-204ENST00000504131 RTN4Q9NQC3 1192 aaKnown RBP9.52□□□□□ -0.89
CLCN3-204ENST00000504131 POLR3GLQ9BT43 218 aa9.51□□□□□ -0.89
CLCN3-204ENST00000504131 PLPPR3Q6T4P5 718 aa9.51□□□□□ -0.89
CLCN3-204ENST00000504131 GLIPR1L2Q4G1C9 344 aa9.51□□□□□ -0.89
CLCN3-204ENST00000504131 NCBP3Q53F19 620 aaKnown RBP9.49□□□□□ -0.89
CLCN3-204ENST00000504131 TULP1O00294 542 aaPredicted RBP9.45□□□□□ -0.9
CLCN3-204ENST00000504131 DCAF8L2P0C7V8 631 aa9.45□□□□□ -0.9
CLCN3-204ENST00000504131 FAM9AQ8IZU1 332 aaPredicted RBP9.45□□□□□ -0.9
CLCN3-204ENST00000504131 YTHDC1Q96MU7 727 aaKnown RBP9.42□□□□□ -0.9
CLCN3-204ENST00000504131 HOMEZQ8IX15 550 aa9.4□□□□□ -0.9
CLCN3-204ENST00000504131 HAP1P54257 671 aaPredicted RBP9.36□□□□□ -0.91
CLCN3-204ENST00000504131 CCER1Q8TC90 406 aaPredicted RBP9.35□□□□□ -0.91
CLCN3-204ENST00000504131 C14orf37Q86TY3 774 aa9.34□□□□□ -0.91
CLCN3-204ENST00000504131 ARXQ96QS3 562 aa9.34□□□□□ -0.91
CLCN3-204ENST00000504131 PLEKHG5O94827 1062 aa9.33□□□□□ -0.92
CLCN3-204ENST00000504131 AMER1Q5JTC6 1135 aaPredicted RBP9.33□□□□□ -0.92
CLCN3-204ENST00000504131 NPM2Q86SE8 214 aaKnown RBP9.27□□□□□ -0.92
CLCN3-204ENST00000504131 PKNOX2Q96KN3 472 aa9.26□□□□□ -0.93
CLCN3-204ENST00000504131 CLSPNQ9HAW4 1339 aa9.26□□□□□ -0.93
CLCN3-204ENST00000504131 TIMELESSQ9UNS1 1208 aa9.23□□□□□ -0.93
CLCN3-204ENST00000504131 ZEB1P37275 1124 aaPredicted RBP9.22□□□□□ -0.93
CLCN3-204ENST00000504131 TPRNQ4KMQ1 711 aa9.22□□□□□ -0.93
CLCN3-204ENST00000504131 KLHL34Q8N239 644 aa9.2□□□□□ -0.94
CLCN3-204ENST00000504131 PDE4CQ08493 712 aa9.2□□□□□ -0.94
CLCN3-204ENST00000504131 CDK11BP21127 795 aaKnown RBP9.2□□□□□ -0.94
CLCN3-204ENST00000504131 CDK11AQ9UQ88 783 aaPredicted RBP9.2□□□□□ -0.94
CLCN3-204ENST00000504131 RTL5Q5HYW3 569 aaPredicted RBP9.18□□□□□ -0.94
CLCN3-204ENST00000504131 HRCP23327 699 aa9.18□□□□□ -0.94
CLCN3-204ENST00000504131 ANP32EQ9BTT0 268 aa9.16□□□□□ -0.94
CLCN3-204ENST00000504131 MYT1LQ9UL68 1186 aa9.16□□□□□ -0.94
CLCN3-204ENST00000504131 A0A0U1RQG5 324 aaPredicted RBP9.16□□□□□ -0.94
CLCN3-204ENST00000504131 PDIA4P13667 645 aaKnown RBP9.14□□□□□ -0.95
CLCN3-204ENST00000504131 ZNF326Q5BKZ1 582 aaKnown RBP9.11□□□□□ -0.95
CLCN3-204ENST00000504131 SCAF1Q9H7N4 1312 aaKnown RBP9.1□□□□□ -0.95
CLCN3-204ENST00000504131 GTF3C3Q9Y5Q9 886 aa9.09□□□□□ -0.95
CLCN3-204ENST00000504131 BCANQ96GW7 911 aa9.04□□□□□ -0.96
CLCN3-204ENST00000504131 CCDC136Q96JN2 1154 aa9.02□□□□□ -0.97
CLCN3-204ENST00000504131 UBE2Q2Q8WVN8 375 aa9.01□□□□□ -0.97
CLCN3-204ENST00000504131 SUPT5HO00267 1087 aaKnown RBP8.99□□□□□ -0.97
CLCN3-204ENST00000504131 CCDC180Q9P1Z9 1646 aa8.99□□□□□ -0.97
CLCN3-204ENST00000504131 TAOK2Q9UL54 1235 aa8.99□□□□□ -0.97
CLCN3-204ENST00000504131 NAP1L5Q96NT1 182 aaPredicted RBP8.97□□□□□ -0.97
CLCN3-204ENST00000504131 ANO8Q9HCE9 1232 aaPredicted RBP8.97□□□□□ -0.97
CLCN3-204ENST00000504131 TAF7LQ5H9L4 462 aa8.95□□□□□ -0.98
CLCN3-204ENST00000504131 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.94□□□□□ -0.98
CLCN3-204ENST00000504131 ACIN1Q9UKV3 1341 aaKnown RBP8.93□□□□□ -0.98
CLCN3-204ENST00000504131 PCGF6Q9BYE7 350 aa8.93□□□□□ -0.98
CLCN3-204ENST00000504131 PPARGC1BQ86YN6 1023 aaKnown RBP8.91□□□□□ -0.98
CLCN3-204ENST00000504131 DEKP35659 375 aaKnown RBP8.88□□□□□ -0.99
CLCN3-204ENST00000504131 CSRNP3Q8WYN3 585 aa8.87□□□□□ -0.99
CLCN3-204ENST00000504131 KCNA4P22459 653 aa8.86□□□□□ -0.99
CLCN3-204ENST00000504131 ARID3AQ99856 593 aa8.86□□□□□ -0.99
CLCN3-204ENST00000504131 VSIG10Q8N0Z9 540 aa8.86□□□□□ -0.99
CLCN3-204ENST00000504131 DHX37Q8IY37 1157 aaKnown RBP8.85□□□□□ -0.99
CLCN3-204ENST00000504131 HMGB1P09429 215 aaKnown RBP8.84□□□□□ -0.99
CLCN3-204ENST00000504131 BRD2P25440 801 aaKnown RBP8.83□□□□□ -1
CLCN3-204ENST00000504131 PTMSP20962 102 aa8.83□□□□□ -1
CLCN3-204ENST00000504131 CHMP4AQ9BY43 222 aa8.83□□□□□ -1
CLCN3-204ENST00000504131 BCL11BQ9C0K0 894 aaPredicted RBP8.83□□□□□ -1
CLCN3-204ENST00000504131 ZNF526Q8TF50 670 aaPredicted RBP8.82□□□□□ -1
CLCN3-204ENST00000504131 PAXIP1Q6ZW49 1069 aaPredicted RBP8.81□□□□□ -1
CLCN3-204ENST00000504131 ERICH6BQ5W0A0 696 aa8.81□□□□□ -1
CLCN3-204ENST00000504131 CCDC9Q9Y3X0 531 aaKnown RBP8.8□□□□□ -1
CLCN3-204ENST00000504131 HSP90B1P14625 803 aaKnown RBP8.79□□□□□ -1
CLCN3-204ENST00000504131 ARID4BQ4LE39 1312 aaPredicted RBP8.79□□□□□ -1
CLCN3-204ENST00000504131 ZNF316A6NFI3 1004 aaPredicted RBP8.79□□□□□ -1
CLCN3-204ENST00000504131 NCLP19338 710 aaKnown RBP8.77□□□□□ -1.01
CLCN3-204ENST00000504131 CFAP44Q96MT7 982 aa8.77□□□□□ -1.01
CLCN3-204ENST00000504131 CNGB1Q14028 1251 aaPredicted RBP8.74□□□□□ -1.01
CLCN3-204ENST00000504131 CHIC1Q5VXU3 224 aa8.74□□□□□ -1.01
CLCN3-204ENST00000504131 FBXO3Q9UK99 471 aa8.73□□□□□ -1.01
CLCN3-204ENST00000504131 AEBP2Q6ZN18 517 aaPredicted RBP8.72□□□□□ -1.01
CLCN3-204ENST00000504131 IRX6P78412 446 aaPredicted RBP8.71□□□□□ -1.01
CLCN3-204ENST00000504131 SALL2Q9Y467 1007 aaPredicted RBP8.71□□□□□ -1.02
CLCN3-204ENST00000504131 TNNT2P45379 298 aaPredicted RBP8.7□□□□□ -1.02
CLCN3-204ENST00000504131 APPP05067 770 aa8.7□□□□□ -1.02
CLCN3-204ENST00000504131 PATL2C9JE40 543 aaKnown RBP8.67□□□□□ -1.02
CLCN3-204ENST00000504131 NEUROD1Q13562 356 aa8.64□□□□□ -1.03
CLCN3-204ENST00000504131 CANXP27824 592 aaKnown RBP8.63□□□□□ -1.03
CLCN3-204ENST00000504131 TRIM26Q12899 539 aaPredicted RBP8.63□□□□□ -1.03
CLCN3-204ENST00000504131 FGD1P98174 961 aa8.62□□□□□ -1.03
CLCN3-204ENST00000504131 NBR1Q14596 966 aa8.6□□□□□ -1.03
CLCN3-204ENST00000504131 RBM10P98175 930 aaKnown RBP8.59□□□□□ -1.03
CLCN3-204ENST00000504131 USP35Q9P2H5 1018 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms