RNA–Protein interactions for RNA: ENST00000504003.1

ARHGEF28-206, Transcript of Rho guanine nucleotide exchange factor 28, humanhuman

TSL 4

Gene ARHGEF28, Length 539 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF28-206ENST00000504003 AEBP2Q6ZN18 517 aaPredicted RBP28.15■■■□□ 2.1
ARHGEF28-206ENST00000504003 CHIC1Q5VXU3 224 aa26.81■■□□□ 1.88
ARHGEF28-206ENST00000504003 SENP3Q9H4L4 574 aaPredicted RBP24.2■■□□□ 1.46
ARHGEF28-206ENST00000504003 PHF23Q9BUL5 403 aaPredicted RBP23.79■■□□□ 1.4
ARHGEF28-206ENST00000504003 FOXD1Q16676 465 aa22.44■■□□□ 1.18
ARHGEF28-206ENST00000504003 PLPPR3Q6T4P5 718 aa21.48■■□□□ 1.03
ARHGEF28-206ENST00000504003 NISCHQ9Y2I1 1504 aa21.26■□□□□ 0.99
ARHGEF28-206ENST00000504003 MSH5O43196 834 aa21.16■□□□□ 0.98
ARHGEF28-206ENST00000504003 PIAS4Q8N2W9 510 aaPredicted RBP21.05■□□□□ 0.96
ARHGEF28-206ENST00000504003 PPP6R1Q9UPN7 881 aa20.89■□□□□ 0.93
ARHGEF28-206ENST00000504003 ADRA2BP18089 450 aa20.86■□□□□ 0.93
ARHGEF28-206ENST00000504003 POTEDQ86YR6 584 aa20.59■□□□□ 0.89
ARHGEF28-206ENST00000504003 SCAF1Q9H7N4 1312 aaKnown RBP19.28■□□□□ 0.68
ARHGEF28-206ENST00000504003 DMRT2Q9Y5R5 561 aa19.14■□□□□ 0.65
ARHGEF28-206ENST00000504003 MAPK8IP2Q13387 824 aaPredicted RBP19.13■□□□□ 0.65
ARHGEF28-206ENST00000504003 CCDC180Q9P1Z9 1646 aa18.78■□□□□ 0.6
ARHGEF28-206ENST00000504003 PPP4R3CPQ6ZMV5 832 aa18.77■□□□□ 0.6
ARHGEF28-206ENST00000504003 CNKSR2Q8WXI2 1034 aa18.47■□□□□ 0.55
ARHGEF28-206ENST00000504003 DCAF8L1A6NGE4 600 aa18.41■□□□□ 0.54
ARHGEF28-206ENST00000504003 HOXD11P31277 338 aaPredicted RBP18.41■□□□□ 0.54
ARHGEF28-206ENST00000504003 RNF216Q9NWF9 866 aaPredicted RBP18.3■□□□□ 0.52
ARHGEF28-206ENST00000504003 NCBP3Q53F19 620 aaKnown RBP18.15■□□□□ 0.5
ARHGEF28-206ENST00000504003 CACNB1Q02641 598 aaPredicted RBP18.14■□□□□ 0.49
ARHGEF28-206ENST00000504003 RNF39Q9H2S5 420 aa17.96■□□□□ 0.47
ARHGEF28-206ENST00000504003 ABCC9O60706 1549 aa17.89■□□□□ 0.45
ARHGEF28-206ENST00000504003 DNAJC5BQ9UF47 199 aa17.85■□□□□ 0.45
ARHGEF28-206ENST00000504003 ZCCHC6Q5VYS8 1495 aaKnown RBP17.79■□□□□ 0.44
ARHGEF28-206ENST00000504003 C1QBPQ07021 282 aaKnown RBP17.77■□□□□ 0.44
ARHGEF28-206ENST00000504003 NPM3O75607 178 aaKnown RBP17.75■□□□□ 0.43
ARHGEF28-206ENST00000504003 DCAF8L2P0C7V8 631 aa17.68■□□□□ 0.42
ARHGEF28-206ENST00000504003 DCAF1Q9Y4B6 1507 aa17.65■□□□□ 0.42
ARHGEF28-206ENST00000504003 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.6■□□□□ 0.412e-9■□□□□ 9.7
ARHGEF28-206ENST00000504003 MYO15BQ96JP2 1530 aa17.57■□□□□ 0.4
ARHGEF28-206ENST00000504003 NACADO15069 1562 aa17.56■□□□□ 0.4
ARHGEF28-206ENST00000504003 RB1CC1Q8TDY2 1594 aa17.49■□□□□ 0.39
ARHGEF28-206ENST00000504003 KCNA4P22459 653 aa17.36■□□□□ 0.37
ARHGEF28-206ENST00000504003 U3KPZ7 1027 aaPredicted RBP17.15■□□□□ 0.34
ARHGEF28-206ENST00000504003 SCRIBQ14160 1630 aa17.11■□□□□ 0.33
ARHGEF28-206ENST00000504003 SHROOM4Q9ULL8 1493 aa17.05■□□□□ 0.32
ARHGEF28-206ENST00000504003 UNC13AQ9UPW8 1703 aa17.01■□□□□ 0.31
ARHGEF28-206ENST00000504003 CAPN15O75808 1086 aa16.96■□□□□ 0.31
ARHGEF28-206ENST00000504003 SLC4A2P04920 1241 aa16.91■□□□□ 0.3
ARHGEF28-206ENST00000504003 APLP2Q06481 763 aa16.89■□□□□ 0.29
ARHGEF28-206ENST00000504003 SPINK5Q9NQ38 1064 aaPredicted RBP16.88■□□□□ 0.29
ARHGEF28-206ENST00000504003 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.82■□□□□ 0.28
ARHGEF28-206ENST00000504003 HNRNPUL2Q1KMD3 747 aaKnown RBP16.82■□□□□ 0.28
ARHGEF28-206ENST00000504003 BICRAQ9NZM4 1560 aa16.81■□□□□ 0.28
ARHGEF28-206ENST00000504003 DSG3P32926 999 aa16.8■□□□□ 0.28
ARHGEF28-206ENST00000504003 PABPN1Q86U42 306 aaKnown RBP eCLIP16.78■□□□□ 0.28
ARHGEF28-206ENST00000504003 ZNF219Q9P2Y4 722 aaPredicted RBP16.7■□□□□ 0.26
ARHGEF28-206ENST00000504003 SAMD1Q6SPF0 538 aaPredicted RBP16.68■□□□□ 0.26
ARHGEF28-206ENST00000504003 TRHP20396 242 aaPredicted RBP16.66■□□□□ 0.26
ARHGEF28-206ENST00000504003 ABCB7O75027 752 aa16.51■□□□□ 0.23
ARHGEF28-206ENST00000504003 MYCNP04198 464 aaPredicted RBP16.51■□□□□ 0.23
ARHGEF28-206ENST00000504003 BAZ1AQ9NRL2 1556 aaPredicted RBP16.51■□□□□ 0.23
ARHGEF28-206ENST00000504003 SLC4A1APQ9BWU0 796 aaKnown RBP16.46■□□□□ 0.23
ARHGEF28-206ENST00000504003 CECR2Q9BXF3 1484 aa16.44■□□□□ 0.22
ARHGEF28-206ENST00000504003 SMARCA4P51532 1647 aa16.41■□□□□ 0.22
ARHGEF28-206ENST00000504003 EIF4G1Q04637 1599 aaKnown RBP16.39■□□□□ 0.21
ARHGEF28-206ENST00000504003 MROH2BQ7Z745 1585 aa16.35■□□□□ 0.21
ARHGEF28-206ENST00000504003 RSF1Q96T23 1441 aaPredicted RBP16.34■□□□□ 0.21
ARHGEF28-206ENST00000504003 SUPT5HO00267 1087 aaKnown RBP16.31■□□□□ 0.2
ARHGEF28-206ENST00000504003 FOXD4L1Q9NU39 408 aa16.3■□□□□ 0.2
ARHGEF28-206ENST00000504003 SMARCA2P51531 1590 aa16.28■□□□□ 0.2
ARHGEF28-206ENST00000504003 PEG3Q9GZU2 1588 aa16.25■□□□□ 0.19
ARHGEF28-206ENST00000504003 WIZO95785 1651 aa16.22■□□□□ 0.19
ARHGEF28-206ENST00000504003 CC2D2AQ9P2K1 1620 aa16.22■□□□□ 0.19
ARHGEF28-206ENST00000504003 ATAD2BQ9ULI0 1458 aa16.21■□□□□ 0.19
ARHGEF28-206ENST00000504003 POLA2Q14181 598 aa16.18■□□□□ 0.18
ARHGEF28-206ENST00000504003 RBM42Q9BTD8 480 aaKnown RBP16.18■□□□□ 0.18
ARHGEF28-206ENST00000504003 POTEHQ6S545 545 aa16.17■□□□□ 0.18
ARHGEF28-206ENST00000504003 BAZ1BQ9UIG0 1483 aaKnown RBP16.16■□□□□ 0.18
ARHGEF28-206ENST00000504003 NCAPD3P42695 1498 aa16.15■□□□□ 0.18
ARHGEF28-206ENST00000504003 HMGXB3Q12766 1538 aa16.14■□□□□ 0.17
ARHGEF28-206ENST00000504003 TOP2AP11388 1531 aaKnown RBP16.11■□□□□ 0.17
ARHGEF28-206ENST00000504003 ZBTB12Q9Y330 459 aaPredicted RBP15.99■□□□□ 0.15
ARHGEF28-206ENST00000504003 ATF5Q9Y2D1 282 aaPredicted RBP15.97■□□□□ 0.15
ARHGEF28-206ENST00000504003 ZBTB22O15209 634 aa15.89■□□□□ 0.13
ARHGEF28-206ENST00000504003 CCDC88BA6NC98 1476 aa15.89■□□□□ 0.13
ARHGEF28-206ENST00000504003 ATXN8OSP0DMR3 200 aa15.83■□□□□ 0.12
ARHGEF28-206ENST00000504003 DNAJC5Q9H3Z4 198 aa15.81■□□□□ 0.12
ARHGEF28-206ENST00000504003 CHRDL2Q6WN34 429 aa15.74■□□□□ 0.11
ARHGEF28-206ENST00000504003 AKT1S1Q96B36 256 aa15.73■□□□□ 0.11
ARHGEF28-206ENST00000504003 CADPSQ9ULU8 1353 aa15.72■□□□□ 0.11
ARHGEF28-206ENST00000504003 LAMC3Q9Y6N6 1575 aa15.7■□□□□ 0.1
ARHGEF28-206ENST00000504003 CFTRP13569 1480 aa15.69■□□□□ 0.1
ARHGEF28-206ENST00000504003 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
ARHGEF28-206ENST00000504003 OSCARQ8IYS5 282 aa15.67■□□□□ 0.1
ARHGEF28-206ENST00000504003 PDS5BQ9NTI5 1447 aa15.61■□□□□ 0.09
ARHGEF28-206ENST00000504003 FBLN2P98095 1184 aa15.56■□□□□ 0.08
ARHGEF28-206ENST00000504003 NESP48681 1621 aa15.56■□□□□ 0.08
ARHGEF28-206ENST00000504003 FANCD2Q9BXW9 1451 aa15.53■□□□□ 0.08
ARHGEF28-206ENST00000504003 REM2Q8IYK8 340 aaPredicted RBP15.53■□□□□ 0.08
ARHGEF28-206ENST00000504003 CEP164Q9UPV0 1460 aa15.51■□□□□ 0.07
ARHGEF28-206ENST00000504003 ERCC6Q03468 1493 aa15.48■□□□□ 0.07
ARHGEF28-206ENST00000504003 ABCC8Q09428 1581 aa15.45■□□□□ 0.06
ARHGEF28-206ENST00000504003 KIF21AQ7Z4S6 1674 aa15.45■□□□□ 0.06
ARHGEF28-206ENST00000504003 WRNQ14191 1432 aaPredicted RBP eCLIP15.45■□□□□ 0.06
ARHGEF28-206ENST00000504003 TRIM41Q8WV44 630 aa15.45■□□□□ 0.06
ARHGEF28-206ENST00000504003 SPDYE2BA6NHP3 402 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms