RNA–Protein interactions for RNA: ENST00000503341.1

ARHGEF28-205, Transcript of Rho guanine nucleotide exchange factor 28, humanhuman

TSL 2

Gene ARHGEF28, Length 1,926 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF28-205ENST00000503341 NISCHQ9Y2I1 1504 aa42.47■■■■■ 4.39
ARHGEF28-205ENST00000503341 CCDC180Q9P1Z9 1646 aa36.81■■■■□ 3.48
ARHGEF28-205ENST00000503341 ZCCHC6Q5VYS8 1495 aaKnown RBP35.73■■■■□ 3.31
ARHGEF28-205ENST00000503341 DCAF1Q9Y4B6 1507 aa35.08■■■■□ 3.21
ARHGEF28-205ENST00000503341 DCAF8L2P0C7V8 631 aa35.04■■■■□ 3.2
ARHGEF28-205ENST00000503341 SHROOM4Q9ULL8 1493 aa34.94■■■■□ 3.18
ARHGEF28-205ENST00000503341 ABCC9O60706 1549 aa34.6■■■■□ 3.13
ARHGEF28-205ENST00000503341 MYO15BQ96JP2 1530 aa34.53■■■■□ 3.12
ARHGEF28-205ENST00000503341 NACADO15069 1562 aa34.24■■■■□ 3.07
ARHGEF28-205ENST00000503341 SCRIBQ14160 1630 aa33.96■■■■□ 3.03
ARHGEF28-205ENST00000503341 RB1CC1Q8TDY2 1594 aa33.86■■■■□ 3.01
ARHGEF28-205ENST00000503341 SUPT5HO00267 1087 aaKnown RBP33.79■■■■□ 3
ARHGEF28-205ENST00000503341 UNC13AQ9UPW8 1703 aa33.21■■■□□ 2.91
ARHGEF28-205ENST00000503341 RSF1Q96T23 1441 aaPredicted RBP33.1■■■□□ 2.89
ARHGEF28-205ENST00000503341 CECR2Q9BXF3 1484 aa33.02■■■□□ 2.88
ARHGEF28-205ENST00000503341 BICRAQ9NZM4 1560 aa32.88■■■□□ 2.85
ARHGEF28-205ENST00000503341 MROH2BQ7Z745 1585 aa32.85■■■□□ 2.85
ARHGEF28-205ENST00000503341 PABPN1Q86U42 306 aaKnown RBP eCLIP32.75■■■□□ 2.83
ARHGEF28-205ENST00000503341 BAZ1AQ9NRL2 1556 aaPredicted RBP32.74■■■□□ 2.83
ARHGEF28-205ENST00000503341 WIZO95785 1651 aa32.59■■■□□ 2.81
ARHGEF28-205ENST00000503341 SMARCA4P51532 1647 aa32.56■■■□□ 2.8
ARHGEF28-205ENST00000503341 CHIC1Q5VXU3 224 aa32.51■■■□□ 2.8
ARHGEF28-205ENST00000503341 TOP2AP11388 1531 aaKnown RBP32.23■■■□□ 2.75
ARHGEF28-205ENST00000503341 PEG3Q9GZU2 1588 aa32.14■■■□□ 2.74
ARHGEF28-205ENST00000503341 ATAD2BQ9ULI0 1458 aa31.97■■■□□ 2.71
ARHGEF28-205ENST00000503341 SMARCA2P51531 1590 aa31.96■■■□□ 2.71
ARHGEF28-205ENST00000503341 CCDC88BA6NC98 1476 aa31.95■■■□□ 2.7
ARHGEF28-205ENST00000503341 EIF4G1Q04637 1599 aaKnown RBP31.84■■■□□ 2.69
ARHGEF28-205ENST00000503341 BAZ1BQ9UIG0 1483 aaKnown RBP31.79■■■□□ 2.68
ARHGEF28-205ENST00000503341 TRIM41Q8WV44 630 aa31.72■■■□□ 2.67
ARHGEF28-205ENST00000503341 NCAPD3P42695 1498 aa31.63■■■□□ 2.65
ARHGEF28-205ENST00000503341 HMGXB3Q12766 1538 aa31.58■■■□□ 2.65
ARHGEF28-205ENST00000503341 ABCC8Q09428 1581 aa31.38■■■□□ 2.61
ARHGEF28-205ENST00000503341 LOC105371045A0A1W2PR82 267 aa31.32■■■□□ 2.6
ARHGEF28-205ENST00000503341 CC2D2AQ9P2K1 1620 aa31.3■■■□□ 2.6
ARHGEF28-205ENST00000503341 FAM9AQ8IZU1 332 aaPredicted RBP31.18■■■□□ 2.58
ARHGEF28-205ENST00000503341 WRNQ14191 1432 aaPredicted RBP eCLIP31.12■■■□□ 2.57
ARHGEF28-205ENST00000503341 CFTRP13569 1480 aa31.02■■■□□ 2.56
ARHGEF28-205ENST00000503341 SYNJ1O43426 1573 aa30.99■■■□□ 2.55
ARHGEF28-205ENST00000503341 SOGA1O94964 1423 aa30.89■■■□□ 2.54
ARHGEF28-205ENST00000503341 CADPSQ9ULU8 1353 aa30.86■■■□□ 2.53
ARHGEF28-205ENST00000503341 EEA1Q15075 1411 aa30.82■■■□□ 2.52
ARHGEF28-205ENST00000503341 PRDM2Q13029 1718 aa30.82■■■□□ 2.52
ARHGEF28-205ENST00000503341 TOP2BQ02880 1626 aa30.81■■■□□ 2.52
ARHGEF28-205ENST00000503341 BIVM-ERCC5R4GMW8 1640 aa30.77■■■□□ 2.52
ARHGEF28-205ENST00000503341 RUSC2Q8N2Y8 1516 aa30.76■■■□□ 2.51
ARHGEF28-205ENST00000503341 EHMT2Q96KQ7 1210 aa30.75■■■□□ 2.51
ARHGEF28-205ENST00000503341 CSRNP3Q8WYN3 585 aa30.69■■■□□ 2.5
ARHGEF28-205ENST00000503341 CUX1P39880 1505 aa30.68■■■□□ 2.5
ARHGEF28-205ENST00000503341 FANCD2Q9BXW9 1451 aa30.51■■■□□ 2.47
ARHGEF28-205ENST00000503341 DNAJC5BQ9UF47 199 aa30.51■■■□□ 2.47
ARHGEF28-205ENST00000503341 NESP48681 1621 aa30.5■■■□□ 2.47
ARHGEF28-205ENST00000503341 LAMC3Q9Y6N6 1575 aa30.47■■■□□ 2.47
ARHGEF28-205ENST00000503341 GOLGA3Q08378 1498 aa30.43■■■□□ 2.46
ARHGEF28-205ENST00000503341 TNIKQ9UKE5 1360 aa30.43■■■□□ 2.46
ARHGEF28-205ENST00000503341 KIF21BO75037 1637 aa30.41■■■□□ 2.46
ARHGEF28-205ENST00000503341 CEP164Q9UPV0 1460 aa30.4■■■□□ 2.46
ARHGEF28-205ENST00000503341 UBTFP17480 764 aaKnown RBP30.32■■■□□ 2.44
ARHGEF28-205ENST00000503341 KIF27Q86VH2 1401 aa30.3■■■□□ 2.44
ARHGEF28-205ENST00000503341 FGD5Q6ZNL6 1462 aa30.29■■■□□ 2.44
ARHGEF28-205ENST00000503341 CEP162Q5TB80 1403 aa30.28■■■□□ 2.44
ARHGEF28-205ENST00000503341 DNMBPQ6XZF7 1577 aa30.27■■■□□ 2.44
ARHGEF28-205ENST00000503341 PDS5BQ9NTI5 1447 aa30.24■■■□□ 2.43
ARHGEF28-205ENST00000503341 RAPGEF2Q9Y4G8 1499 aa30.22■■■□□ 2.43
ARHGEF28-205ENST00000503341 TOPBP1Q92547 1522 aa30.22■■■□□ 2.43
ARHGEF28-205ENST00000503341 PCGF6Q9BYE7 350 aa30.21■■■□□ 2.43
ARHGEF28-205ENST00000503341 PRXQ9BXM0 1461 aa30.2■■■□□ 2.42
ARHGEF28-205ENST00000503341 CUX2O14529 1486 aa30.16■■■□□ 2.42
ARHGEF28-205ENST00000503341 ERICH3Q5RHP9 1530 aa30.15■■■□□ 2.42
ARHGEF28-205ENST00000503341 URB2Q14146 1524 aaKnown RBP30.12■■■□□ 2.41
ARHGEF28-205ENST00000503341 TRIM26Q12899 539 aaPredicted RBP30.1■■■□□ 2.41
ARHGEF28-205ENST00000503341 POLA1P09884 1462 aaPredicted RBP30.1■■■□□ 2.41
ARHGEF28-205ENST00000503341 KIF21AQ7Z4S6 1674 aa30.08■■■□□ 2.41
ARHGEF28-205ENST00000503341 IGF1RP08069 1367 aa30.04■■■□□ 2.4
ARHGEF28-205ENST00000503341 RAD54L2Q9Y4B4 1467 aa30.03■■■□□ 2.4
ARHGEF28-205ENST00000503341 ABCA10Q8WWZ4 1543 aa30.02■■■□□ 2.4
ARHGEF28-205ENST00000503341 CLIP1P30622 1438 aa29.97■■■□□ 2.39
ARHGEF28-205ENST00000503341 CARMIL1Q5VZK9 1371 aa29.88■■■□□ 2.37
ARHGEF28-205ENST00000503341 WDR97A6NE52 1622 aa29.87■■■□□ 2.37
ARHGEF28-205ENST00000503341 MRC2Q9UBG0 1479 aa29.83■■■□□ 2.37
ARHGEF28-205ENST00000503341 PPARGC1BQ86YN6 1023 aaKnown RBP29.83■■■□□ 2.37
ARHGEF28-205ENST00000503341 RANGAP1P46060 587 aaPredicted RBP29.76■■■□□ 2.35
ARHGEF28-205ENST00000503341 VPS8Q8N3P4 1428 aa29.75■■■□□ 2.35
ARHGEF28-205ENST00000503341 ABCA5Q8WWZ7 1642 aa29.74■■■□□ 2.35
ARHGEF28-205ENST00000503341 TARBP1Q13395 1621 aaKnown RBP29.73■■■□□ 2.35
ARHGEF28-205ENST00000503341 TDRD9Q8NDG6 1382 aaKnown RBP29.71■■■□□ 2.35
ARHGEF28-205ENST00000503341 CUL7Q14999 1698 aa29.7■■■□□ 2.35
ARHGEF28-205ENST00000503341 GAPVD1Q14C86 1478 aa29.67■■■□□ 2.34
ARHGEF28-205ENST00000503341 WDR62O43379 1518 aa29.65■■■□□ 2.34
ARHGEF28-205ENST00000503341 ARAP1Q96P48 1450 aa29.64■■■□□ 2.34
ARHGEF28-205ENST00000503341 ERCC6Q03468 1493 aa29.6■■■□□ 2.33
ARHGEF28-205ENST00000503341 HRCP23327 699 aa29.59■■■□□ 2.33
ARHGEF28-205ENST00000503341 ARHGAP35Q9NRY4 1499 aa29.58■■■□□ 2.33
ARHGEF28-205ENST00000503341 IFT140Q96RY7 1462 aa29.52■■■□□ 2.32
ARHGEF28-205ENST00000503341 TTBK1Q5TCY1 1321 aaPredicted RBP29.5■■■□□ 2.31
ARHGEF28-205ENST00000503341 THOC2Q8NI27 1593 aaKnown RBP29.49■■■□□ 2.31
ARHGEF28-205ENST00000503341 AQRO60306 1485 aaKnown RBP eCLIP29.47■■■□□ 2.31
ARHGEF28-205ENST00000503341 APLP2Q06481 763 aa29.46■■■□□ 2.31
ARHGEF28-205ENST00000503341 PBRM1Q86U86 1689 aa29.45■■■□□ 2.3
ARHGEF28-205ENST00000503341 CTTNBP2Q8WZ74 1663 aa29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms