RNA–Protein interactions for RNA: ENST00000497960.5

NUP50-219, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 986 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-219ENST00000497960 NISCHQ9Y2I1 1504 aa37.5■■■■□ 3.59
NUP50-219ENST00000497960 CCDC180Q9P1Z9 1646 aa33.41■■■□□ 2.94
NUP50-219ENST00000497960 ABCC9O60706 1549 aa33.03■■■□□ 2.88
NUP50-219ENST00000497960 RB1CC1Q8TDY2 1594 aa31.64■■■□□ 2.65
NUP50-219ENST00000497960 DCAF8L2P0C7V8 631 aa31.57■■■□□ 2.64
NUP50-219ENST00000497960 NACADO15069 1562 aa31.53■■■□□ 2.64
NUP50-219ENST00000497960 MYO15BQ96JP2 1530 aa31.24■■■□□ 2.59
NUP50-219ENST00000497960 ZCCHC6Q5VYS8 1495 aaKnown RBP31.16■■■□□ 2.58
NUP50-219ENST00000497960 DCAF1Q9Y4B6 1507 aa31■■■□□ 2.55
NUP50-219ENST00000497960 PABPN1Q86U42 306 aaKnown RBP eCLIP30.86■■■□□ 2.53
NUP50-219ENST00000497960 UNC13AQ9UPW8 1703 aa30.81■■■□□ 2.52
NUP50-219ENST00000497960 BICRAQ9NZM4 1560 aa30.63■■■□□ 2.49
NUP50-219ENST00000497960 DNAJC5BQ9UF47 199 aa30.57■■■□□ 2.48
NUP50-219ENST00000497960 SCRIBQ14160 1630 aa30.5■■■□□ 2.47
NUP50-219ENST00000497960 SHROOM4Q9ULL8 1493 aa30.34■■■□□ 2.45
NUP50-219ENST00000497960 EIF4G1Q04637 1599 aaKnown RBP29.88■■■□□ 2.37
NUP50-219ENST00000497960 CC2D2AQ9P2K1 1620 aa29.83■■■□□ 2.37
NUP50-219ENST00000497960 CECR2Q9BXF3 1484 aa29.72■■■□□ 2.35
NUP50-219ENST00000497960 SMARCA4P51532 1647 aa29.13■■■□□ 2.25
NUP50-219ENST00000497960 NCAPD3P42695 1498 aa29.11■■■□□ 2.25
NUP50-219ENST00000497960 BAZ1AQ9NRL2 1556 aaPredicted RBP29.09■■■□□ 2.25
NUP50-219ENST00000497960 ATAD2BQ9ULI0 1458 aa29.09■■■□□ 2.25
NUP50-219ENST00000497960 SMARCA2P51531 1590 aa29.04■■■□□ 2.24
NUP50-219ENST00000497960 HMGXB3Q12766 1538 aa28.91■■■□□ 2.22
NUP50-219ENST00000497960 MROH2BQ7Z745 1585 aa28.88■■■□□ 2.21
NUP50-219ENST00000497960 BAZ1BQ9UIG0 1483 aaKnown RBP28.85■■■□□ 2.21
NUP50-219ENST00000497960 PEG3Q9GZU2 1588 aa28.84■■■□□ 2.21
NUP50-219ENST00000497960 WIZO95785 1651 aa28.54■■■□□ 2.16
NUP50-219ENST00000497960 ERCC6Q03468 1493 aa28.53■■■□□ 2.16
NUP50-219ENST00000497960 RSF1Q96T23 1441 aaPredicted RBP28.48■■■□□ 2.15
NUP50-219ENST00000497960 NESP48681 1621 aa28.47■■■□□ 2.15
NUP50-219ENST00000497960 LAMC3Q9Y6N6 1575 aa28.36■■■□□ 2.13
NUP50-219ENST00000497960 CUX2O14529 1486 aa28.29■■■□□ 2.12
NUP50-219ENST00000497960 CADPSQ9ULU8 1353 aa28.27■■■□□ 2.12
NUP50-219ENST00000497960 PDS5BQ9NTI5 1447 aa28.25■■■□□ 2.11
NUP50-219ENST00000497960 TOP2AP11388 1531 aaKnown RBP28.24■■■□□ 2.11
NUP50-219ENST00000497960 KIF21AQ7Z4S6 1674 aa28.08■■■□□ 2.09
NUP50-219ENST00000497960 THOC2Q8NI27 1593 aaKnown RBP28.06■■■□□ 2.08
NUP50-219ENST00000497960 CFTRP13569 1480 aa28.02■■■□□ 2.08
NUP50-219ENST00000497960 FANCD2Q9BXW9 1451 aa27.94■■■□□ 2.06
NUP50-219ENST00000497960 MRC2Q9UBG0 1479 aa27.94■■■□□ 2.06
NUP50-219ENST00000497960 CCDC88BA6NC98 1476 aa27.93■■■□□ 2.06
NUP50-219ENST00000497960 CEP164Q9UPV0 1460 aa27.93■■■□□ 2.06
NUP50-219ENST00000497960 WDR62O43379 1518 aa27.82■■■□□ 2.04
NUP50-219ENST00000497960 DNAJC5Q9H3Z4 198 aa27.79■■■□□ 2.04
NUP50-219ENST00000497960 PRDM2Q13029 1718 aa27.7■■■□□ 2.02
NUP50-219ENST00000497960 URB2Q14146 1524 aaKnown RBP27.64■■■□□ 2.02
NUP50-219ENST00000497960 SUPT5HO00267 1087 aaKnown RBP27.64■■■□□ 2.02
NUP50-219ENST00000497960 ABCC8Q09428 1581 aa27.46■■□□□ 1.99
NUP50-219ENST00000497960 TOPBP1Q92547 1522 aa27.44■■□□□ 1.98
NUP50-219ENST00000497960 DNMBPQ6XZF7 1577 aa27.37■■□□□ 1.97
NUP50-219ENST00000497960 IFT140Q96RY7 1462 aa27.37■■□□□ 1.97
NUP50-219ENST00000497960 ZNF608Q9ULD9 1512 aaPredicted RBP27.23■■□□□ 1.95
NUP50-219ENST00000497960 POLA1P09884 1462 aaPredicted RBP27.19■■□□□ 1.94
NUP50-219ENST00000497960 OSCARQ8IYS5 282 aa27.14■■□□□ 1.94
NUP50-219ENST00000497960 TARBP1Q13395 1621 aaKnown RBP27.12■■□□□ 1.93
NUP50-219ENST00000497960 CUX1P39880 1505 aa27.11■■□□□ 1.93
NUP50-219ENST00000497960 SOGA1O94964 1423 aa27.11■■□□□ 1.93
NUP50-219ENST00000497960 FGD5Q6ZNL6 1462 aa27.09■■□□□ 1.93
NUP50-219ENST00000497960 RAD54L2Q9Y4B4 1467 aa27.08■■□□□ 1.93
NUP50-219ENST00000497960 EIF4G3O43432 1585 aaKnown RBP27.08■■□□□ 1.93
NUP50-219ENST00000497960 AQRO60306 1485 aaKnown RBP eCLIP27.07■■□□□ 1.926e-6■□□□□ 8.5
NUP50-219ENST00000497960 TDRD9Q8NDG6 1382 aaKnown RBP26.99■■□□□ 1.91
NUP50-219ENST00000497960 WDR97A6NE52 1622 aa26.91■■□□□ 1.9
NUP50-219ENST00000497960 WRNQ14191 1432 aaPredicted RBP eCLIP26.89■■□□□ 1.89
NUP50-219ENST00000497960 FBLN2P98095 1184 aa26.88■■□□□ 1.89
NUP50-219ENST00000497960 GRIN2BQ13224 1484 aa26.81■■□□□ 1.88
NUP50-219ENST00000497960 ABCA10Q8WWZ4 1543 aa26.81■■□□□ 1.88
NUP50-219ENST00000497960 TOP2BQ02880 1626 aa26.8■■□□□ 1.88
NUP50-219ENST00000497960 SNAPC4Q5SXM2 1469 aa26.8■■□□□ 1.88
NUP50-219ENST00000497960 TRIM41Q8WV44 630 aa26.79■■□□□ 1.88
NUP50-219ENST00000497960 GAPVD1Q14C86 1478 aa26.78■■□□□ 1.88
NUP50-219ENST00000497960 CHD1O14646 1710 aa26.77■■□□□ 1.88
NUP50-219ENST00000497960 BIVM-ERCC5R4GMW8 1640 aa26.77■■□□□ 1.88
NUP50-219ENST00000497960 SYNJ1O43426 1573 aa26.76■■□□□ 1.87
NUP50-219ENST00000497960 MAGI1Q96QZ7 1491 aaPredicted RBP26.76■■□□□ 1.87
NUP50-219ENST00000497960 CHMP7Q8WUX9 453 aaPredicted RBP26.75■■□□□ 1.87
NUP50-219ENST00000497960 ABCA5Q8WWZ7 1642 aa26.68■■□□□ 1.86
NUP50-219ENST00000497960 SYNJ2O15056 1496 aa26.67■■□□□ 1.86
NUP50-219ENST00000497960 PBRM1Q86U86 1689 aa26.66■■□□□ 1.86
NUP50-219ENST00000497960 RIMBP3CA6NJZ7 1639 aa26.63■■□□□ 1.85
NUP50-219ENST00000497960 RIMBP3BA6NNM3 1639 aa26.63■■□□□ 1.85
NUP50-219ENST00000497960 RIMBP3Q9UFD9 1639 aa26.63■■□□□ 1.85
NUP50-219ENST00000497960 ARHGEF11O15085 1522 aa26.62■■□□□ 1.85
NUP50-219ENST00000497960 CLASP1Q7Z460 1538 aa26.5■■□□□ 1.83
NUP50-219ENST00000497960 ERICH3Q5RHP9 1530 aa26.48■■□□□ 1.83
NUP50-219ENST00000497960 FHAD1B1AJZ9 1412 aa26.48■■□□□ 1.83
NUP50-219ENST00000497960 CYB5RLQ6IPT4 315 aa26.47■■□□□ 1.83
NUP50-219ENST00000497960 ADAMTS12P58397 1594 aa26.46■■□□□ 1.83
NUP50-219ENST00000497960 GRIN2AQ12879 1464 aa26.45■■□□□ 1.82
NUP50-219ENST00000497960 ARAP1Q96P48 1450 aa26.38■■□□□ 1.81
NUP50-219ENST00000497960 KIF27Q86VH2 1401 aa26.37■■□□□ 1.81
NUP50-219ENST00000497960 NUP160Q12769 1436 aa26.35■■□□□ 1.81
NUP50-219ENST00000497960 CEP170Q5SW79 1584 aa26.29■■□□□ 1.8
NUP50-219ENST00000497960 IGF1RP08069 1367 aa26.28■■□□□ 1.8
NUP50-219ENST00000497960 CUL7Q14999 1698 aa26.16■■□□□ 1.78
NUP50-219ENST00000497960 JPH4Q96JJ6 628 aa26.14■■□□□ 1.78
NUP50-219ENST00000497960 CARMIL1Q5VZK9 1371 aa26.14■■□□□ 1.78
NUP50-219ENST00000497960 SHROOM2Q13796 1616 aa26.13■■□□□ 1.77
NUP50-219ENST00000497960 ERCC6L2Q5T890 1561 aa26.11■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms