RNA–Protein interactions for RNA: ENST00000494613.5

LIMS2-216, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 1,137 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-216ENST00000494613 NISCHQ9Y2I1 1504 aa38.29■■■■□ 3.72
LIMS2-216ENST00000494613 CCDC180Q9P1Z9 1646 aa34.03■■■■□ 3.04
LIMS2-216ENST00000494613 ABCC9O60706 1549 aa33.87■■■■□ 3.01
LIMS2-216ENST00000494613 DCAF8L2P0C7V8 631 aa32.43■■■□□ 2.78
LIMS2-216ENST00000494613 RB1CC1Q8TDY2 1594 aa32.31■■■□□ 2.76
LIMS2-216ENST00000494613 NACADO15069 1562 aa32.2■■■□□ 2.75
LIMS2-216ENST00000494613 MYO15BQ96JP2 1530 aa31.87■■■□□ 2.69
LIMS2-216ENST00000494613 ZCCHC6Q5VYS8 1495 aaKnown RBP31.75■■■□□ 2.67
LIMS2-216ENST00000494613 PABPN1Q86U42 306 aaKnown RBP eCLIP31.74■■■□□ 2.67
LIMS2-216ENST00000494613 DNAJC5BQ9UF47 199 aa31.62■■■□□ 2.65
LIMS2-216ENST00000494613 DCAF1Q9Y4B6 1507 aa31.6■■■□□ 2.65
LIMS2-216ENST00000494613 UNC13AQ9UPW8 1703 aa31.5■■■□□ 2.63
LIMS2-216ENST00000494613 BICRAQ9NZM4 1560 aa31.38■■■□□ 2.61
LIMS2-216ENST00000494613 SCRIBQ14160 1630 aa31.12■■■□□ 2.57
LIMS2-216ENST00000494613 SHROOM4Q9ULL8 1493 aa30.91■■■□□ 2.54
LIMS2-216ENST00000494613 EIF4G1Q04637 1599 aaKnown RBP30.56■■■□□ 2.48
LIMS2-216ENST00000494613 CC2D2AQ9P2K1 1620 aa30.55■■■□□ 2.48
LIMS2-216ENST00000494613 CECR2Q9BXF3 1484 aa30.46■■■□□ 2.47
LIMS2-216ENST00000494613 NCAPD3P42695 1498 aa29.8■■■□□ 2.36
LIMS2-216ENST00000494613 ATAD2BQ9ULI0 1458 aa29.75■■■□□ 2.35
LIMS2-216ENST00000494613 SMARCA4P51532 1647 aa29.72■■■□□ 2.35
LIMS2-216ENST00000494613 BAZ1AQ9NRL2 1556 aaPredicted RBP29.65■■■□□ 2.34
LIMS2-216ENST00000494613 SMARCA2P51531 1590 aa29.62■■■□□ 2.33
LIMS2-216ENST00000494613 MROH2BQ7Z745 1585 aa29.53■■■□□ 2.32
LIMS2-216ENST00000494613 HMGXB3Q12766 1538 aa29.49■■■□□ 2.31
LIMS2-216ENST00000494613 BAZ1BQ9UIG0 1483 aaKnown RBP29.44■■■□□ 2.3
LIMS2-216ENST00000494613 PEG3Q9GZU2 1588 aa29.43■■■□□ 2.3
LIMS2-216ENST00000494613 NESP48681 1621 aa29.2■■■□□ 2.27
LIMS2-216ENST00000494613 ERCC6Q03468 1493 aa29.19■■■□□ 2.26
LIMS2-216ENST00000494613 WIZO95785 1651 aa29.15■■■□□ 2.26
LIMS2-216ENST00000494613 RSF1Q96T23 1441 aaPredicted RBP29.11■■■□□ 2.25
LIMS2-216ENST00000494613 CUX2O14529 1486 aa28.97■■■□□ 2.23
LIMS2-216ENST00000494613 LAMC3Q9Y6N6 1575 aa28.97■■■□□ 2.23
LIMS2-216ENST00000494613 CADPSQ9ULU8 1353 aa28.96■■■□□ 2.23
LIMS2-216ENST00000494613 PDS5BQ9NTI5 1447 aa28.9■■■□□ 2.22
LIMS2-216ENST00000494613 TOP2AP11388 1531 aaKnown RBP28.77■■■□□ 2.2
LIMS2-216ENST00000494613 DNAJC5Q9H3Z4 198 aa28.74■■■□□ 2.19
LIMS2-216ENST00000494613 KIF21AQ7Z4S6 1674 aa28.7■■■□□ 2.19
LIMS2-216ENST00000494613 THOC2Q8NI27 1593 aaKnown RBP28.68■■■□□ 2.18
LIMS2-216ENST00000494613 CFTRP13569 1480 aa28.65■■■□□ 2.18
LIMS2-216ENST00000494613 CCDC88BA6NC98 1476 aa28.57■■■□□ 2.16
LIMS2-216ENST00000494613 FANCD2Q9BXW9 1451 aa28.56■■■□□ 2.16
LIMS2-216ENST00000494613 MRC2Q9UBG0 1479 aa28.55■■■□□ 2.16
LIMS2-216ENST00000494613 CEP164Q9UPV0 1460 aa28.51■■■□□ 2.15
LIMS2-216ENST00000494613 WDR62O43379 1518 aa28.43■■■□□ 2.14
LIMS2-216ENST00000494613 URB2Q14146 1524 aaKnown RBP28.29■■■□□ 2.12
LIMS2-216ENST00000494613 SUPT5HO00267 1087 aaKnown RBP28.25■■■□□ 2.11
LIMS2-216ENST00000494613 PRDM2Q13029 1718 aa28.16■■■□□ 2.1
LIMS2-216ENST00000494613 TOPBP1Q92547 1522 aa28.05■■■□□ 2.08
LIMS2-216ENST00000494613 ABCC8Q09428 1581 aa28.03■■■□□ 2.08
LIMS2-216ENST00000494613 IFT140Q96RY7 1462 aa27.95■■■□□ 2.07
LIMS2-216ENST00000494613 OSCARQ8IYS5 282 aa27.93■■■□□ 2.06
LIMS2-216ENST00000494613 DNMBPQ6XZF7 1577 aa27.91■■■□□ 2.06
LIMS2-216ENST00000494613 ZNF608Q9ULD9 1512 aaPredicted RBP27.91■■■□□ 2.06
LIMS2-216ENST00000494613 POLA1P09884 1462 aaPredicted RBP27.77■■■□□ 2.04
LIMS2-216ENST00000494613 SOGA1O94964 1423 aa27.77■■■□□ 2.04
LIMS2-216ENST00000494613 AQRO60306 1485 aaKnown RBP eCLIP27.76■■■□□ 2.03
LIMS2-216ENST00000494613 RAD54L2Q9Y4B4 1467 aa27.74■■■□□ 2.03
LIMS2-216ENST00000494613 TARBP1Q13395 1621 aaKnown RBP27.72■■■□□ 2.03
LIMS2-216ENST00000494613 CUX1P39880 1505 aa27.69■■■□□ 2.02
LIMS2-216ENST00000494613 TDRD9Q8NDG6 1382 aaKnown RBP27.68■■■□□ 2.02
LIMS2-216ENST00000494613 FGD5Q6ZNL6 1462 aa27.65■■■□□ 2.02
LIMS2-216ENST00000494613 EIF4G3O43432 1585 aaKnown RBP27.63■■■□□ 2.01
LIMS2-216ENST00000494613 TRIM41Q8WV44 630 aa27.62■■■□□ 2.01
LIMS2-216ENST00000494613 FBLN2P98095 1184 aa27.59■■■□□ 2.01
LIMS2-216ENST00000494613 CHMP7Q8WUX9 453 aaPredicted RBP27.44■■□□□ 1.98
LIMS2-216ENST00000494613 WRNQ14191 1432 aaPredicted RBP eCLIP27.41■■□□□ 1.98
LIMS2-216ENST00000494613 GRIN2BQ13224 1484 aa27.4■■□□□ 1.98
LIMS2-216ENST00000494613 WDR97A6NE52 1622 aa27.39■■□□□ 1.98
LIMS2-216ENST00000494613 SNAPC4Q5SXM2 1469 aa27.38■■□□□ 1.97
LIMS2-216ENST00000494613 GAPVD1Q14C86 1478 aa27.38■■□□□ 1.97
LIMS2-216ENST00000494613 ABCA10Q8WWZ4 1543 aa27.36■■□□□ 1.97
LIMS2-216ENST00000494613 CHD1O14646 1710 aa27.36■■□□□ 1.97
LIMS2-216ENST00000494613 MAGI1Q96QZ7 1491 aaPredicted RBP27.32■■□□□ 1.96
LIMS2-216ENST00000494613 TOP2BQ02880 1626 aa27.3■■□□□ 1.96
LIMS2-216ENST00000494613 SYNJ1O43426 1573 aa27.29■■□□□ 1.96
LIMS2-216ENST00000494613 RIMBP3CA6NJZ7 1639 aa27.29■■□□□ 1.96
LIMS2-216ENST00000494613 RIMBP3BA6NNM3 1639 aa27.29■■□□□ 1.96
LIMS2-216ENST00000494613 RIMBP3Q9UFD9 1639 aa27.29■■□□□ 1.96
LIMS2-216ENST00000494613 ARHGEF11O15085 1522 aa27.27■■□□□ 1.96
LIMS2-216ENST00000494613 BIVM-ERCC5R4GMW8 1640 aa27.27■■□□□ 1.96
LIMS2-216ENST00000494613 CYB5RLQ6IPT4 315 aa27.26■■□□□ 1.95
LIMS2-216ENST00000494613 SYNJ2O15056 1496 aa27.25■■□□□ 1.95
LIMS2-216ENST00000494613 ABCA5Q8WWZ7 1642 aa27.2■■□□□ 1.95
LIMS2-216ENST00000494613 PBRM1Q86U86 1689 aa27.17■■□□□ 1.94
LIMS2-216ENST00000494613 CLASP1Q7Z460 1538 aa27.09■■□□□ 1.93
LIMS2-216ENST00000494613 FHAD1B1AJZ9 1412 aa27.04■■□□□ 1.92
LIMS2-216ENST00000494613 ARAP1Q96P48 1450 aa27.04■■□□□ 1.92
LIMS2-216ENST00000494613 GRIN2AQ12879 1464 aa27.01■■□□□ 1.91
LIMS2-216ENST00000494613 ERICH3Q5RHP9 1530 aa27■■□□□ 1.91
LIMS2-216ENST00000494613 ADAMTS12P58397 1594 aa26.96■■□□□ 1.91
LIMS2-216ENST00000494613 IGF1RP08069 1367 aa26.93■■□□□ 1.9
LIMS2-216ENST00000494613 NUP160Q12769 1436 aa26.92■■□□□ 1.9
LIMS2-216ENST00000494613 KIF27Q86VH2 1401 aa26.88■■□□□ 1.89
LIMS2-216ENST00000494613 CEP170Q5SW79 1584 aa26.87■■□□□ 1.89
LIMS2-216ENST00000494613 JPH4Q96JJ6 628 aa26.84■■□□□ 1.89
LIMS2-216ENST00000494613 TRHP20396 242 aaPredicted RBP26.83■■□□□ 1.89
LIMS2-216ENST00000494613 ERCC6L2Q5T890 1561 aa26.75■■□□□ 1.87
LIMS2-216ENST00000494613 CARMIL1Q5VZK9 1371 aa26.72■■□□□ 1.87
LIMS2-216ENST00000494613 PRG4Q92954 1404 aaPredicted RBP26.71■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms