RNA–Protein interactions for RNA: ENST00000492511.1

PDLIM1-204, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 453 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-204ENST00000492511 NISCHQ9Y2I1 1504 aa17.58■□□□□ 0.41
PDLIM1-204ENST00000492511 CCDC180Q9P1Z9 1646 aa15.56■□□□□ 0.08
PDLIM1-204ENST00000492511 ABCC9O60706 1549 aa15.36■□□□□ 0.05
PDLIM1-204ENST00000492511 DCAF8L2P0C7V8 631 aa14.73□□□□□ -0.05
PDLIM1-204ENST00000492511 RB1CC1Q8TDY2 1594 aa14.69□□□□□ -0.06
PDLIM1-204ENST00000492511 NACADO15069 1562 aa14.68□□□□□ -0.06
PDLIM1-204ENST00000492511 ZCCHC6Q5VYS8 1495 aaKnown RBP14.63□□□□□ -0.07
PDLIM1-204ENST00000492511 MYO15BQ96JP2 1530 aa14.6□□□□□ -0.07
PDLIM1-204ENST00000492511 DCAF1Q9Y4B6 1507 aa14.53□□□□□ -0.08
PDLIM1-204ENST00000492511 PABPN1Q86U42 306 aaKnown RBP eCLIP14.4□□□□□ -0.1
PDLIM1-204ENST00000492511 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.12
PDLIM1-204ENST00000492511 BICRAQ9NZM4 1560 aa14.31□□□□□ -0.12
PDLIM1-204ENST00000492511 DNAJC5BQ9UF47 199 aa14.31□□□□□ -0.12
PDLIM1-204ENST00000492511 SCRIBQ14160 1630 aa14.24□□□□□ -0.13
PDLIM1-204ENST00000492511 SHROOM4Q9ULL8 1493 aa14.09□□□□□ -0.15
PDLIM1-204ENST00000492511 EIF4G1Q04637 1599 aaKnown RBP13.91□□□□□ -0.18
PDLIM1-204ENST00000492511 CC2D2AQ9P2K1 1620 aa13.86□□□□□ -0.19
PDLIM1-204ENST00000492511 CECR2Q9BXF3 1484 aa13.79□□□□□ -0.2
PDLIM1-204ENST00000492511 SMARCA4P51532 1647 aa13.61□□□□□ -0.23
PDLIM1-204ENST00000492511 NCAPD3P42695 1498 aa13.61□□□□□ -0.23
PDLIM1-204ENST00000492511 ATAD2BQ9ULI0 1458 aa13.61□□□□□ -0.23
PDLIM1-204ENST00000492511 BAZ1AQ9NRL2 1556 aaPredicted RBP13.58□□□□□ -0.23
PDLIM1-204ENST00000492511 MROH2BQ7Z745 1585 aa13.57□□□□□ -0.24
PDLIM1-204ENST00000492511 SMARCA2P51531 1590 aa13.53□□□□□ -0.24
PDLIM1-204ENST00000492511 PEG3Q9GZU2 1588 aa13.49□□□□□ -0.25
PDLIM1-204ENST00000492511 HMGXB3Q12766 1538 aa13.48□□□□□ -0.25
PDLIM1-204ENST00000492511 BAZ1BQ9UIG0 1483 aaKnown RBP13.44□□□□□ -0.26
PDLIM1-204ENST00000492511 RSF1Q96T23 1441 aaPredicted RBP13.42□□□□□ -0.26
PDLIM1-204ENST00000492511 DNAJC5Q9H3Z4 198 aa13.4□□□□□ -0.26
PDLIM1-204ENST00000492511 WIZO95785 1651 aa13.38□□□□□ -0.27
PDLIM1-204ENST00000492511 NESP48681 1621 aa13.29□□□□□ -0.28
PDLIM1-204ENST00000492511 CUX2O14529 1486 aa13.26□□□□□ -0.29
PDLIM1-204ENST00000492511 TOP2AP11388 1531 aaKnown RBP13.23□□□□□ -0.29
PDLIM1-204ENST00000492511 ERCC6Q03468 1493 aa13.22□□□□□ -0.29
PDLIM1-204ENST00000492511 CADPSQ9ULU8 1353 aa13.2□□□□□ -0.3
PDLIM1-204ENST00000492511 LAMC3Q9Y6N6 1575 aa13.19□□□□□ -0.3
PDLIM1-204ENST00000492511 PDS5BQ9NTI5 1447 aa13.13□□□□□ -0.31
PDLIM1-204ENST00000492511 CCDC88BA6NC98 1476 aa13.13□□□□□ -0.31
PDLIM1-204ENST00000492511 CFTRP13569 1480 aa13.11□□□□□ -0.31
PDLIM1-204ENST00000492511 THOC2Q8NI27 1593 aaKnown RBP13.05□□□□□ -0.32
PDLIM1-204ENST00000492511 KIF21AQ7Z4S6 1674 aa13.05□□□□□ -0.32
PDLIM1-204ENST00000492511 SUPT5HO00267 1087 aaKnown RBP13.04□□□□□ -0.32
PDLIM1-204ENST00000492511 FANCD2Q9BXW9 1451 aa13.03□□□□□ -0.32
PDLIM1-204ENST00000492511 MRC2Q9UBG0 1479 aa12.99□□□□□ -0.33
PDLIM1-204ENST00000492511 CEP164Q9UPV0 1460 aa12.99□□□□□ -0.33
PDLIM1-204ENST00000492511 WDR62O43379 1518 aa12.95□□□□□ -0.34
PDLIM1-204ENST00000492511 URB2Q14146 1524 aaKnown RBP12.93□□□□□ -0.34
PDLIM1-204ENST00000492511 PRDM2Q13029 1718 aa12.86□□□□□ -0.35
PDLIM1-204ENST00000492511 TOPBP1Q92547 1522 aa12.82□□□□□ -0.36
PDLIM1-204ENST00000492511 ABCC8Q09428 1581 aa12.78□□□□□ -0.36
PDLIM1-204ENST00000492511 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.37
PDLIM1-204ENST00000492511 TRIM41Q8WV44 630 aa12.75□□□□□ -0.37
PDLIM1-204ENST00000492511 IFT140Q96RY7 1462 aa12.73□□□□□ -0.37
PDLIM1-204ENST00000492511 CUX1P39880 1505 aa12.72□□□□□ -0.37
PDLIM1-204ENST00000492511 ZNF608Q9ULD9 1512 aaPredicted RBP12.72□□□□□ -0.37
PDLIM1-204ENST00000492511 POLA1P09884 1462 aaPredicted RBP12.72□□□□□ -0.37
PDLIM1-204ENST00000492511 RAD54L2Q9Y4B4 1467 aa12.69□□□□□ -0.38
PDLIM1-204ENST00000492511 TARBP1Q13395 1621 aaKnown RBP12.68□□□□□ -0.38
PDLIM1-204ENST00000492511 SOGA1O94964 1423 aa12.67□□□□□ -0.38
PDLIM1-204ENST00000492511 FGD5Q6ZNL6 1462 aa12.66□□□□□ -0.38
PDLIM1-204ENST00000492511 AQRO60306 1485 aaKnown RBP eCLIP12.65□□□□□ -0.38
PDLIM1-204ENST00000492511 TDRD9Q8NDG6 1382 aaKnown RBP12.62□□□□□ -0.39
PDLIM1-204ENST00000492511 WRNQ14191 1432 aaPredicted RBP eCLIP12.61□□□□□ -0.39
PDLIM1-204ENST00000492511 EIF4G3O43432 1585 aaKnown RBP12.6□□□□□ -0.39
PDLIM1-204ENST00000492511 OSCARQ8IYS5 282 aa12.59□□□□□ -0.39
PDLIM1-204ENST00000492511 SYNJ1O43426 1573 aa12.58□□□□□ -0.4
PDLIM1-204ENST00000492511 TOP2BQ02880 1626 aa12.56□□□□□ -0.4
PDLIM1-204ENST00000492511 ABCA10Q8WWZ4 1543 aa12.55□□□□□ -0.4
PDLIM1-204ENST00000492511 BIVM-ERCC5R4GMW8 1640 aa12.55□□□□□ -0.4
PDLIM1-204ENST00000492511 WDR97A6NE52 1622 aa12.51□□□□□ -0.41
PDLIM1-204ENST00000492511 GAPVD1Q14C86 1478 aa12.51□□□□□ -0.41
PDLIM1-204ENST00000492511 GRIN2BQ13224 1484 aa12.5□□□□□ -0.41
PDLIM1-204ENST00000492511 SNAPC4Q5SXM2 1469 aa12.5□□□□□ -0.41
PDLIM1-204ENST00000492511 FBLN2P98095 1184 aa12.48□□□□□ -0.41
PDLIM1-204ENST00000492511 ABCA5Q8WWZ7 1642 aa12.47□□□□□ -0.41
PDLIM1-204ENST00000492511 MAGI1Q96QZ7 1491 aaPredicted RBP12.46□□□□□ -0.42
PDLIM1-204ENST00000492511 RIMBP3CA6NJZ7 1639 aa12.45□□□□□ -0.42
PDLIM1-204ENST00000492511 RIMBP3BA6NNM3 1639 aa12.45□□□□□ -0.42
PDLIM1-204ENST00000492511 RIMBP3Q9UFD9 1639 aa12.45□□□□□ -0.42
PDLIM1-204ENST00000492511 CHMP7Q8WUX9 453 aaPredicted RBP12.44□□□□□ -0.42
PDLIM1-204ENST00000492511 SYNJ2O15056 1496 aa12.42□□□□□ -0.42
PDLIM1-204ENST00000492511 CHD1O14646 1710 aa12.42□□□□□ -0.42
PDLIM1-204ENST00000492511 PBRM1Q86U86 1689 aa12.4□□□□□ -0.42
PDLIM1-204ENST00000492511 ARHGEF11O15085 1522 aa12.37□□□□□ -0.43
PDLIM1-204ENST00000492511 ERICH3Q5RHP9 1530 aa12.37□□□□□ -0.43
PDLIM1-204ENST00000492511 IGF1RP08069 1367 aa12.37□□□□□ -0.43
PDLIM1-204ENST00000492511 FHAD1B1AJZ9 1412 aa12.37□□□□□ -0.43
PDLIM1-204ENST00000492511 CLASP1Q7Z460 1538 aa12.35□□□□□ -0.43
PDLIM1-204ENST00000492511 ADAMTS12P58397 1594 aa12.35□□□□□ -0.43
PDLIM1-204ENST00000492511 GRIN2AQ12879 1464 aa12.34□□□□□ -0.43
PDLIM1-204ENST00000492511 KIF27Q86VH2 1401 aa12.34□□□□□ -0.43
PDLIM1-204ENST00000492511 NUP160Q12769 1436 aa12.31□□□□□ -0.44
PDLIM1-204ENST00000492511 RUSC2Q8N2Y8 1516 aa12.29□□□□□ -0.44
PDLIM1-204ENST00000492511 CEP170Q5SW79 1584 aa12.29□□□□□ -0.44
PDLIM1-204ENST00000492511 CYB5RLQ6IPT4 315 aa12.27□□□□□ -0.45
PDLIM1-204ENST00000492511 TRHP20396 242 aaPredicted RBP12.26□□□□□ -0.45
PDLIM1-204ENST00000492511 CARMIL1Q5VZK9 1371 aa12.26□□□□□ -0.45
PDLIM1-204ENST00000492511 ARAP1Q96P48 1450 aa12.26□□□□□ -0.45
PDLIM1-204ENST00000492511 JPH4Q96JJ6 628 aa12.22□□□□□ -0.45
PDLIM1-204ENST00000492511 ERCC6L2Q5T890 1561 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms