RNA–Protein interactions for RNA: ENST00000491734.6

EXD3-212, Transcript of exonuclease 3'-5' domain containing 3, humanhuman

TSL 1 (best)

Gene EXD3, Length 2,176 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXD3-212ENST00000491734 NISCHQ9Y2I1 1504 aa39.31■■■■□ 3.88
EXD3-212ENST00000491734 CCDC180Q9P1Z9 1646 aa34.19■■■■□ 3.06
EXD3-212ENST00000491734 ZCCHC6Q5VYS8 1495 aaKnown RBP33.08■■■□□ 2.89
EXD3-212ENST00000491734 SHROOM4Q9ULL8 1493 aa32.54■■■□□ 2.8
EXD3-212ENST00000491734 DCAF1Q9Y4B6 1507 aa32.52■■■□□ 2.8
EXD3-212ENST00000491734 DCAF8L2P0C7V8 631 aa32.35■■■□□ 2.77
EXD3-212ENST00000491734 ABCC9O60706 1549 aa32.07■■■□□ 2.72
EXD3-212ENST00000491734 MYO15BQ96JP2 1530 aa32.05■■■□□ 2.72
EXD3-212ENST00000491734 NACADO15069 1562 aa31.76■■■□□ 2.68
EXD3-212ENST00000491734 SUPT5HO00267 1087 aaKnown RBP31.56■■■□□ 2.64
EXD3-212ENST00000491734 SCRIBQ14160 1630 aa31.45■■■□□ 2.62
EXD3-212ENST00000491734 RB1CC1Q8TDY2 1594 aa31.42■■■□□ 2.62
EXD3-212ENST00000491734 UNC13AQ9UPW8 1703 aa30.89■■■□□ 2.54
EXD3-212ENST00000491734 RSF1Q96T23 1441 aaPredicted RBP30.58■■■□□ 2.49
EXD3-212ENST00000491734 CECR2Q9BXF3 1484 aa30.53■■■□□ 2.48
EXD3-212ENST00000491734 BICRAQ9NZM4 1560 aa30.53■■■□□ 2.48
EXD3-212ENST00000491734 CHIC1Q5VXU3 224 aa30.41■■■□□ 2.46
EXD3-212ENST00000491734 MROH2BQ7Z745 1585 aa30.39■■■□□ 2.45
EXD3-212ENST00000491734 BAZ1AQ9NRL2 1556 aaPredicted RBP30.32■■■□□ 2.44
EXD3-212ENST00000491734 PABPN1Q86U42 306 aaKnown RBP eCLIP30.27■■■□□ 2.44
EXD3-212ENST00000491734 SMARCA4P51532 1647 aa30.18■■■□□ 2.42
EXD3-212ENST00000491734 WIZO95785 1651 aa30.16■■■□□ 2.42
EXD3-212ENST00000491734 TOP2AP11388 1531 aaKnown RBP29.83■■■□□ 2.37
EXD3-212ENST00000491734 PEG3Q9GZU2 1588 aa29.83■■■□□ 2.37
EXD3-212ENST00000491734 HRCP23327 699 aa29.73■■■□□ 2.35
EXD3-212ENST00000491734 ATAD2BQ9ULI0 1458 aa29.61■■■□□ 2.33
EXD3-212ENST00000491734 SMARCA2P51531 1590 aa29.59■■■□□ 2.33
EXD3-212ENST00000491734 EIF4G1Q04637 1599 aaKnown RBP29.56■■■□□ 2.32
EXD3-212ENST00000491734 CCDC88BA6NC98 1476 aa29.53■■■□□ 2.32
EXD3-212ENST00000491734 TRIM41Q8WV44 630 aa29.5■■■□□ 2.31
EXD3-212ENST00000491734 BAZ1BQ9UIG0 1483 aaKnown RBP29.44■■■□□ 2.3
EXD3-212ENST00000491734 LOC105371045A0A1W2PR82 267 aa29.43■■■□□ 2.3
EXD3-212ENST00000491734 NCAPD3P42695 1498 aa29.31■■■□□ 2.28
EXD3-212ENST00000491734 HMGXB3Q12766 1538 aa29.31■■■□□ 2.28
EXD3-212ENST00000491734 FAM9AQ8IZU1 332 aaPredicted RBP29.18■■■□□ 2.26
EXD3-212ENST00000491734 PCGF6Q9BYE7 350 aa29.15■■■□□ 2.26
EXD3-212ENST00000491734 CC2D2AQ9P2K1 1620 aa29.06■■■□□ 2.24
EXD3-212ENST00000491734 ABCC8Q09428 1581 aa29.04■■■□□ 2.24
EXD3-212ENST00000491734 EHMT2Q96KQ7 1210 aa28.89■■■□□ 2.22
EXD3-212ENST00000491734 PPARGC1BQ86YN6 1023 aaKnown RBP28.78■■■□□ 2.2
EXD3-212ENST00000491734 WRNQ14191 1432 aaPredicted RBP eCLIP28.76■■■□□ 2.19
EXD3-212ENST00000491734 CFTRP13569 1480 aa28.74■■■□□ 2.19
EXD3-212ENST00000491734 SYNJ1O43426 1573 aa28.67■■■□□ 2.18
EXD3-212ENST00000491734 PRDM2Q13029 1718 aa28.66■■■□□ 2.18
EXD3-212ENST00000491734 SOGA1O94964 1423 aa28.65■■■□□ 2.18
EXD3-212ENST00000491734 TRIM26Q12899 539 aaPredicted RBP28.64■■■□□ 2.18
EXD3-212ENST00000491734 DNAJC5BQ9UF47 199 aa28.56■■■□□ 2.16
EXD3-212ENST00000491734 CADPSQ9ULU8 1353 aa28.56■■■□□ 2.16
EXD3-212ENST00000491734 RUSC2Q8N2Y8 1516 aa28.54■■■□□ 2.16
EXD3-212ENST00000491734 TOP2BQ02880 1626 aa28.54■■■□□ 2.16
EXD3-212ENST00000491734 BIVM-ERCC5R4GMW8 1640 aa28.52■■■□□ 2.16
EXD3-212ENST00000491734 EEA1Q15075 1411 aa28.46■■■□□ 2.15
EXD3-212ENST00000491734 CSRNP3Q8WYN3 585 aa28.43■■■□□ 2.14
EXD3-212ENST00000491734 CUX1P39880 1505 aa28.4■■■□□ 2.14
EXD3-212ENST00000491734 ZEB1P37275 1124 aaPredicted RBP28.37■■■□□ 2.13
EXD3-212ENST00000491734 LAMC3Q9Y6N6 1575 aa28.29■■■□□ 2.12
EXD3-212ENST00000491734 FANCD2Q9BXW9 1451 aa28.25■■■□□ 2.11
EXD3-212ENST00000491734 NESP48681 1621 aa28.25■■■□□ 2.11
EXD3-212ENST00000491734 TNIKQ9UKE5 1360 aa28.21■■■□□ 2.11
EXD3-212ENST00000491734 UBTFP17480 764 aaKnown RBP28.19■■■□□ 2.1
EXD3-212ENST00000491734 GOLGA3Q08378 1498 aa28.17■■■□□ 2.1
EXD3-212ENST00000491734 CEP162Q5TB80 1403 aa28.16■■■□□ 2.1
EXD3-212ENST00000491734 KIF21BO75037 1637 aa28.12■■■□□ 2.09
EXD3-212ENST00000491734 CEP164Q9UPV0 1460 aa28.09■■■□□ 2.09
EXD3-212ENST00000491734 DNMBPQ6XZF7 1577 aa28.06■■■□□ 2.08
EXD3-212ENST00000491734 PELP1Q8IZL8 1130 aaKnown RBP28.05■■■□□ 2.08
EXD3-212ENST00000491734 FGD5Q6ZNL6 1462 aa28.03■■■□□ 2.08
EXD3-212ENST00000491734 PDS5BQ9NTI5 1447 aa28.02■■■□□ 2.08
EXD3-212ENST00000491734 KIF27Q86VH2 1401 aa27.99■■■□□ 2.07
EXD3-212ENST00000491734 TOPBP1Q92547 1522 aa27.99■■■□□ 2.07
EXD3-212ENST00000491734 RAPGEF2Q9Y4G8 1499 aa27.99■■■□□ 2.07
EXD3-212ENST00000491734 KIF21AQ7Z4S6 1674 aa27.95■■■□□ 2.07
EXD3-212ENST00000491734 URB2Q14146 1524 aaKnown RBP27.91■■■□□ 2.06
EXD3-212ENST00000491734 PRXQ9BXM0 1461 aa27.91■■■□□ 2.06
EXD3-212ENST00000491734 ERICH3Q5RHP9 1530 aa27.88■■■□□ 2.05
EXD3-212ENST00000491734 CUX2O14529 1486 aa27.87■■■□□ 2.05
EXD3-212ENST00000491734 POLA1P09884 1462 aaPredicted RBP27.87■■■□□ 2.05
EXD3-212ENST00000491734 CLIP1P30622 1438 aa27.8■■■□□ 2.04
EXD3-212ENST00000491734 ABCA10Q8WWZ4 1543 aa27.8■■■□□ 2.04
EXD3-212ENST00000491734 RAD54L2Q9Y4B4 1467 aa27.77■■■□□ 2.04
EXD3-212ENST00000491734 RANGAP1P46060 587 aaPredicted RBP27.77■■■□□ 2.04
EXD3-212ENST00000491734 TTBK1Q5TCY1 1321 aaPredicted RBP27.76■■■□□ 2.04
EXD3-212ENST00000491734 IGF1RP08069 1367 aa27.74■■■□□ 2.03
EXD3-212ENST00000491734 WDR97A6NE52 1622 aa27.73■■■□□ 2.03
EXD3-212ENST00000491734 SCAF1Q9H7N4 1312 aaKnown RBP27.67■■■□□ 2.02
EXD3-212ENST00000491734 MRC2Q9UBG0 1479 aa27.66■■■□□ 2.02
EXD3-212ENST00000491734 VPS8Q8N3P4 1428 aa27.6■■■□□ 2.01
EXD3-212ENST00000491734 CARMIL1Q5VZK9 1371 aa27.59■■■□□ 2.01
EXD3-212ENST00000491734 TARBP1Q13395 1621 aaKnown RBP27.58■■■□□ 2.01
EXD3-212ENST00000491734 ABCA5Q8WWZ7 1642 aa27.58■■■□□ 2.01
EXD3-212ENST00000491734 WDR62O43379 1518 aa27.54■■■□□ 2
EXD3-212ENST00000491734 CUL7Q14999 1698 aa27.53■■■□□ 2
EXD3-212ENST00000491734 ARAP1Q96P48 1450 aa27.47■■□□□ 1.99
EXD3-212ENST00000491734 ERCC6Q03468 1493 aa27.47■■□□□ 1.99
EXD3-212ENST00000491734 GAPVD1Q14C86 1478 aa27.46■■□□□ 1.99
EXD3-212ENST00000491734 TDRD9Q8NDG6 1382 aaKnown RBP27.46■■□□□ 1.99
EXD3-212ENST00000491734 THOC2Q8NI27 1593 aaKnown RBP27.42■■□□□ 1.98
EXD3-212ENST00000491734 APLP2Q06481 763 aa27.39■■□□□ 1.97
EXD3-212ENST00000491734 IFT140Q96RY7 1462 aa27.35■■□□□ 1.97
EXD3-212ENST00000491734 ARHGAP35Q9NRY4 1499 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms