RNA–Protein interactions for RNA: ENST00000490969.5

SNAPC3-206, Transcript of small nuclear RNA activating complex polypeptide 3, humanhuman

TSL 1 (best)

Gene SNAPC3, Length 2,524 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNAPC3-206ENST00000490969 NISCHQ9Y2I1 1504 aa40.01■■■■■ 4
SNAPC3-206ENST00000490969 CCDC180Q9P1Z9 1646 aa34.56■■■■□ 3.12
SNAPC3-206ENST00000490969 ZCCHC6Q5VYS8 1495 aaKnown RBP33.62■■■□□ 2.97
SNAPC3-206ENST00000490969 DCAF8L2P0C7V8 631 aa33.35■■■□□ 2.93
SNAPC3-206ENST00000490969 SHROOM4Q9ULL8 1493 aa33.2■■■□□ 2.91
SNAPC3-206ENST00000490969 ABCC9O60706 1549 aa32.93■■■□□ 2.86
SNAPC3-206ENST00000490969 DCAF1Q9Y4B6 1507 aa32.85■■■□□ 2.85
SNAPC3-206ENST00000490969 HRCP23327 699 aa32.5■■■□□ 2.79
SNAPC3-206ENST00000490969 SUPT5HO00267 1087 aaKnown RBP32.48■■■□□ 2.79
SNAPC3-206ENST00000490969 MYO15BQ96JP2 1530 aa32.33■■■□□ 2.77
SNAPC3-206ENST00000490969 NACADO15069 1562 aa32.19■■■□□ 2.74
SNAPC3-206ENST00000490969 SCRIBQ14160 1630 aa32.16■■■□□ 2.74
SNAPC3-206ENST00000490969 CHIC1Q5VXU3 224 aa31.97■■■□□ 2.71
SNAPC3-206ENST00000490969 RB1CC1Q8TDY2 1594 aa31.9■■■□□ 2.7
SNAPC3-206ENST00000490969 PCGF6Q9BYE7 350 aa31.9■■■□□ 2.7
SNAPC3-206ENST00000490969 PPARGC1BQ86YN6 1023 aaKnown RBP31.72■■■□□ 2.67
SNAPC3-206ENST00000490969 UNC13AQ9UPW8 1703 aa31.48■■■□□ 2.63
SNAPC3-206ENST00000490969 CECR2Q9BXF3 1484 aa31.3■■■□□ 2.6
SNAPC3-206ENST00000490969 PABPN1Q86U42 306 aaKnown RBP eCLIP31.25■■■□□ 2.59
SNAPC3-206ENST00000490969 RSF1Q96T23 1441 aaPredicted RBP31.22■■■□□ 2.59
SNAPC3-206ENST00000490969 BICRAQ9NZM4 1560 aa31.15■■■□□ 2.58
SNAPC3-206ENST00000490969 LOC105371045A0A1W2PR82 267 aa31.1■■■□□ 2.57
SNAPC3-206ENST00000490969 MROH2BQ7Z745 1585 aa31.06■■■□□ 2.56
SNAPC3-206ENST00000490969 TRIM26Q12899 539 aaPredicted RBP31.05■■■□□ 2.56
SNAPC3-206ENST00000490969 PELP1Q8IZL8 1130 aaKnown RBP30.94■■■□□ 2.54
SNAPC3-206ENST00000490969 WIZO95785 1651 aa30.83■■■□□ 2.53
SNAPC3-206ENST00000490969 BAZ1AQ9NRL2 1556 aaPredicted RBP30.78■■■□□ 2.52
SNAPC3-206ENST00000490969 ZEB1P37275 1124 aaPredicted RBP30.75■■■□□ 2.51
SNAPC3-206ENST00000490969 SMARCA4P51532 1647 aa30.7■■■□□ 2.51
SNAPC3-206ENST00000490969 SCAF1Q9H7N4 1312 aaKnown RBP30.52■■■□□ 2.48
SNAPC3-206ENST00000490969 TOP2AP11388 1531 aaKnown RBP30.31■■■□□ 2.44
SNAPC3-206ENST00000490969 PEG3Q9GZU2 1588 aa30.2■■■□□ 2.43
SNAPC3-206ENST00000490969 ATAD2BQ9ULI0 1458 aa30.19■■■□□ 2.42
SNAPC3-206ENST00000490969 CCDC88BA6NC98 1476 aa30.17■■■□□ 2.42
SNAPC3-206ENST00000490969 TRIM41Q8WV44 630 aa30.15■■■□□ 2.42
SNAPC3-206ENST00000490969 EIF4G1Q04637 1599 aaKnown RBP30.13■■■□□ 2.41
SNAPC3-206ENST00000490969 SMARCA2P51531 1590 aa30.13■■■□□ 2.41
SNAPC3-206ENST00000490969 BAZ1BQ9UIG0 1483 aaKnown RBP30■■■□□ 2.39
SNAPC3-206ENST00000490969 FAM9AQ8IZU1 332 aaPredicted RBP30■■■□□ 2.39
SNAPC3-206ENST00000490969 ACIN1Q9UKV3 1341 aaKnown RBP29.92■■■□□ 2.38
SNAPC3-206ENST00000490969 NCAPD3P42695 1498 aa29.81■■■□□ 2.36
SNAPC3-206ENST00000490969 NEUROD1Q13562 356 aa29.8■■■□□ 2.36
SNAPC3-206ENST00000490969 EHMT2Q96KQ7 1210 aa29.76■■■□□ 2.35
SNAPC3-206ENST00000490969 ABCC8Q09428 1581 aa29.71■■■□□ 2.35
SNAPC3-206ENST00000490969 HMGXB3Q12766 1538 aa29.7■■■□□ 2.35
SNAPC3-206ENST00000490969 CC2D2AQ9P2K1 1620 aa29.69■■■□□ 2.34
SNAPC3-206ENST00000490969 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.68■■■□□ 2.34
SNAPC3-206ENST00000490969 MYT1Q01538 1121 aa29.67■■■□□ 2.34
SNAPC3-206ENST00000490969 CCER1Q8TC90 406 aaPredicted RBP29.65■■■□□ 2.34
SNAPC3-206ENST00000490969 GTF3C3Q9Y5Q9 886 aa29.61■■■□□ 2.33
SNAPC3-206ENST00000490969 CENPBP07199 599 aaPredicted RBP29.6■■■□□ 2.33
SNAPC3-206ENST00000490969 DIEXFQ68CQ4 756 aaKnown RBP29.55■■■□□ 2.32
SNAPC3-206ENST00000490969 DNAJC5BQ9UF47 199 aa29.34■■■□□ 2.29
SNAPC3-206ENST00000490969 WRNQ14191 1432 aaPredicted RBP eCLIP29.32■■■□□ 2.28
SNAPC3-206ENST00000490969 SYNJ1O43426 1573 aa29.27■■■□□ 2.28
SNAPC3-206ENST00000490969 CFTRP13569 1480 aa29.25■■■□□ 2.27
SNAPC3-206ENST00000490969 SOGA1O94964 1423 aa29.2■■■□□ 2.27
SNAPC3-206ENST00000490969 RUSC2Q8N2Y8 1516 aa29.16■■■□□ 2.26
SNAPC3-206ENST00000490969 CADPSQ9ULU8 1353 aa29.12■■■□□ 2.25
SNAPC3-206ENST00000490969 ZNF316A6NFI3 1004 aaPredicted RBP29.1■■■□□ 2.25
SNAPC3-206ENST00000490969 TTBK1Q5TCY1 1321 aaPredicted RBP29.04■■■□□ 2.24
SNAPC3-206ENST00000490969 NESP48681 1621 aa29.04■■■□□ 2.24
SNAPC3-206ENST00000490969 CEP162Q5TB80 1403 aa28.99■■■□□ 2.23
SNAPC3-206ENST00000490969 CUX1P39880 1505 aa28.99■■■□□ 2.23
SNAPC3-206ENST00000490969 TOP2BQ02880 1626 aa28.99■■■□□ 2.23
SNAPC3-206ENST00000490969 PRDM2Q13029 1718 aa28.96■■■□□ 2.23
SNAPC3-206ENST00000490969 YTHDC1Q96MU7 727 aaKnown RBP28.94■■■□□ 2.22
SNAPC3-206ENST00000490969 BIVM-ERCC5R4GMW8 1640 aa28.91■■■□□ 2.22
SNAPC3-206ENST00000490969 CSRNP3Q8WYN3 585 aa28.88■■■□□ 2.21
SNAPC3-206ENST00000490969 TNIKQ9UKE5 1360 aa28.86■■■□□ 2.21
SNAPC3-206ENST00000490969 FANCD2Q9BXW9 1451 aa28.83■■■□□ 2.21
SNAPC3-206ENST00000490969 MIER1Q8N108 512 aa28.81■■■□□ 2.2
SNAPC3-206ENST00000490969 EEA1Q15075 1411 aa28.77■■■□□ 2.2
SNAPC3-206ENST00000490969 LAMC3Q9Y6N6 1575 aa28.69■■■□□ 2.18
SNAPC3-206ENST00000490969 FGD5Q6ZNL6 1462 aa28.62■■■□□ 2.17
SNAPC3-206ENST00000490969 UBTFP17480 764 aaKnown RBP28.61■■■□□ 2.17
SNAPC3-206ENST00000490969 CEP164Q9UPV0 1460 aa28.56■■■□□ 2.16
SNAPC3-206ENST00000490969 TOPBP1Q92547 1522 aa28.55■■■□□ 2.16
SNAPC3-206ENST00000490969 GOLGA3Q08378 1498 aa28.54■■■□□ 2.16
SNAPC3-206ENST00000490969 RAPGEF2Q9Y4G8 1499 aa28.54■■■□□ 2.16
SNAPC3-206ENST00000490969 KIF21AQ7Z4S6 1674 aa28.54■■■□□ 2.16
SNAPC3-206ENST00000490969 URB2Q14146 1524 aaKnown RBP28.53■■■□□ 2.16
SNAPC3-206ENST00000490969 HNRNPUL2Q1KMD3 747 aaKnown RBP28.52■■■□□ 2.16
SNAPC3-206ENST00000490969 DNMBPQ6XZF7 1577 aa28.51■■■□□ 2.15
SNAPC3-206ENST00000490969 PDS5BQ9NTI5 1447 aa28.5■■■□□ 2.15
SNAPC3-206ENST00000490969 KIF21BO75037 1637 aa28.5■■■□□ 2.15
SNAPC3-206ENST00000490969 KIF27Q86VH2 1401 aa28.49■■■□□ 2.15
SNAPC3-206ENST00000490969 RAD54L2Q9Y4B4 1467 aa28.49■■■□□ 2.15
SNAPC3-206ENST00000490969 CUX2O14529 1486 aa28.48■■■□□ 2.15
SNAPC3-206ENST00000490969 POLA1P09884 1462 aaPredicted RBP28.45■■■□□ 2.14
SNAPC3-206ENST00000490969 PRXQ9BXM0 1461 aa28.4■■■□□ 2.14
SNAPC3-206ENST00000490969 CLSPNQ9HAW4 1339 aa28.39■■■□□ 2.14
SNAPC3-206ENST00000490969 RANGAP1P46060 587 aaPredicted RBP28.35■■■□□ 2.13
SNAPC3-206ENST00000490969 IGF1RP08069 1367 aa28.35■■■□□ 2.13
SNAPC3-206ENST00000490969 SUPT16HQ9Y5B9 1047 aaKnown RBP28.3■■■□□ 2.12
SNAPC3-206ENST00000490969 CLIP1P30622 1438 aa28.26■■■□□ 2.12
SNAPC3-206ENST00000490969 ABCA10Q8WWZ4 1543 aa28.26■■■□□ 2.12
SNAPC3-206ENST00000490969 VPS8Q8N3P4 1428 aa28.25■■■□□ 2.11
SNAPC3-206ENST00000490969 ERICH3Q5RHP9 1530 aa28.24■■■□□ 2.11
SNAPC3-206ENST00000490969 TDRD9Q8NDG6 1382 aaKnown RBP28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms