RNA–Protein interactions for RNA: ENST00000490667.1

SHC1-211, Transcript of SHC adaptor protein 1, humanhuman

TSL 2

Gene SHC1, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1-211ENST00000490667 NISCHQ9Y2I1 1504 aa32.13■■■□□ 2.73
SHC1-211ENST00000490667 CCDC180Q9P1Z9 1646 aa28.51■■■□□ 2.15
SHC1-211ENST00000490667 ABCC9O60706 1549 aa28.28■■■□□ 2.12
SHC1-211ENST00000490667 DCAF8L2P0C7V8 631 aa27.13■■□□□ 1.93
SHC1-211ENST00000490667 RB1CC1Q8TDY2 1594 aa27.03■■□□□ 1.92
SHC1-211ENST00000490667 NACADO15069 1562 aa26.96■■□□□ 1.91
SHC1-211ENST00000490667 MYO15BQ96JP2 1530 aa26.73■■□□□ 1.87
SHC1-211ENST00000490667 ZCCHC6Q5VYS8 1495 aaKnown RBP26.68■■□□□ 1.86
SHC1-211ENST00000490667 DCAF1Q9Y4B6 1507 aa26.54■■□□□ 1.84
SHC1-211ENST00000490667 PABPN1Q86U42 306 aaKnown RBP eCLIP26.5■■□□□ 1.83
SHC1-211ENST00000490667 DNAJC5BQ9UF47 199 aa26.26■■□□□ 1.79
SHC1-211ENST00000490667 UNC13AQ9UPW8 1703 aa26.24■■□□□ 1.79
SHC1-211ENST00000490667 BICRAQ9NZM4 1560 aa26.21■■□□□ 1.79
SHC1-211ENST00000490667 SCRIBQ14160 1630 aa26.07■■□□□ 1.76
SHC1-211ENST00000490667 SHROOM4Q9ULL8 1493 aa25.91■■□□□ 1.74
SHC1-211ENST00000490667 EIF4G1Q04637 1599 aaKnown RBP25.55■■□□□ 1.68
SHC1-211ENST00000490667 CC2D2AQ9P2K1 1620 aa25.48■■□□□ 1.67
SHC1-211ENST00000490667 CECR2Q9BXF3 1484 aa25.43■■□□□ 1.66
SHC1-211ENST00000490667 NCAPD3P42695 1498 aa24.96■■□□□ 1.59
SHC1-211ENST00000490667 ATAD2BQ9ULI0 1458 aa24.92■■□□□ 1.58
SHC1-211ENST00000490667 SMARCA4P51532 1647 aa24.9■■□□□ 1.58
SHC1-211ENST00000490667 BAZ1AQ9NRL2 1556 aaPredicted RBP24.88■■□□□ 1.57
SHC1-211ENST00000490667 SMARCA2P51531 1590 aa24.83■■□□□ 1.57
SHC1-211ENST00000490667 MROH2BQ7Z745 1585 aa24.76■■□□□ 1.55
SHC1-211ENST00000490667 HMGXB3Q12766 1538 aa24.71■■□□□ 1.55
SHC1-211ENST00000490667 BAZ1BQ9UIG0 1483 aaKnown RBP24.69■■□□□ 1.54
SHC1-211ENST00000490667 PEG3Q9GZU2 1588 aa24.67■■□□□ 1.54
SHC1-211ENST00000490667 RSF1Q96T23 1441 aaPredicted RBP24.45■■□□□ 1.51
SHC1-211ENST00000490667 WIZO95785 1651 aa24.42■■□□□ 1.5
SHC1-211ENST00000490667 NESP48681 1621 aa24.39■■□□□ 1.5
SHC1-211ENST00000490667 ERCC6Q03468 1493 aa24.38■■□□□ 1.49
SHC1-211ENST00000490667 CADPSQ9ULU8 1353 aa24.25■■□□□ 1.47
SHC1-211ENST00000490667 LAMC3Q9Y6N6 1575 aa24.24■■□□□ 1.47
SHC1-211ENST00000490667 PDS5BQ9NTI5 1447 aa24.18■■□□□ 1.46
SHC1-211ENST00000490667 CUX2O14529 1486 aa24.17■■□□□ 1.46
SHC1-211ENST00000490667 TOP2AP11388 1531 aaKnown RBP24.16■■□□□ 1.46
SHC1-211ENST00000490667 CFTRP13569 1480 aa24.01■■□□□ 1.43
SHC1-211ENST00000490667 CCDC88BA6NC98 1476 aa23.97■■□□□ 1.43
SHC1-211ENST00000490667 THOC2Q8NI27 1593 aaKnown RBP23.95■■□□□ 1.43
SHC1-211ENST00000490667 KIF21AQ7Z4S6 1674 aa23.95■■□□□ 1.42
SHC1-211ENST00000490667 FANCD2Q9BXW9 1451 aa23.92■■□□□ 1.42
SHC1-211ENST00000490667 MRC2Q9UBG0 1479 aa23.89■■□□□ 1.42
SHC1-211ENST00000490667 CEP164Q9UPV0 1460 aa23.88■■□□□ 1.41
SHC1-211ENST00000490667 DNAJC5Q9H3Z4 198 aa23.81■■□□□ 1.4
SHC1-211ENST00000490667 SUPT5HO00267 1087 aaKnown RBP23.78■■□□□ 1.4
SHC1-211ENST00000490667 WDR62O43379 1518 aa23.78■■□□□ 1.4
SHC1-211ENST00000490667 URB2Q14146 1524 aaKnown RBP23.67■■□□□ 1.38
SHC1-211ENST00000490667 PRDM2Q13029 1718 aa23.55■■□□□ 1.36
SHC1-211ENST00000490667 TOPBP1Q92547 1522 aa23.49■■□□□ 1.35
SHC1-211ENST00000490667 ABCC8Q09428 1581 aa23.49■■□□□ 1.35
SHC1-211ENST00000490667 IFT140Q96RY7 1462 aa23.42■■□□□ 1.34
SHC1-211ENST00000490667 DNMBPQ6XZF7 1577 aa23.4■■□□□ 1.34
SHC1-211ENST00000490667 ZNF608Q9ULD9 1512 aaPredicted RBP23.33■■□□□ 1.33
SHC1-211ENST00000490667 OSCARQ8IYS5 282 aa23.28■■□□□ 1.32
SHC1-211ENST00000490667 POLA1P09884 1462 aaPredicted RBP23.28■■□□□ 1.32
SHC1-211ENST00000490667 SOGA1O94964 1423 aa23.26■■□□□ 1.31
SHC1-211ENST00000490667 RAD54L2Q9Y4B4 1467 aa23.23■■□□□ 1.31
SHC1-211ENST00000490667 CUX1P39880 1505 aa23.23■■□□□ 1.31
SHC1-211ENST00000490667 AQRO60306 1485 aaKnown RBP eCLIP23.22■■□□□ 1.31
SHC1-211ENST00000490667 TARBP1Q13395 1621 aaKnown RBP23.19■■□□□ 1.3
SHC1-211ENST00000490667 FGD5Q6ZNL6 1462 aa23.19■■□□□ 1.3
SHC1-211ENST00000490667 TDRD9Q8NDG6 1382 aaKnown RBP23.17■■□□□ 1.3
SHC1-211ENST00000490667 EIF4G3O43432 1585 aaKnown RBP23.12■■□□□ 1.29
SHC1-211ENST00000490667 FBLN2P98095 1184 aa23.06■■□□□ 1.28
SHC1-211ENST00000490667 WRNQ14191 1432 aaPredicted RBP eCLIP23.05■■□□□ 1.28
SHC1-211ENST00000490667 GRIN2BQ13224 1484 aa22.96■■□□□ 1.27
SHC1-211ENST00000490667 ABCA10Q8WWZ4 1543 aa22.96■■□□□ 1.27
SHC1-211ENST00000490667 WDR97A6NE52 1622 aa22.96■■□□□ 1.27
SHC1-211ENST00000490667 CHMP7Q8WUX9 453 aaPredicted RBP22.95■■□□□ 1.26
SHC1-211ENST00000490667 TRIM41Q8WV44 630 aa22.95■■□□□ 1.26
SHC1-211ENST00000490667 GAPVD1Q14C86 1478 aa22.94■■□□□ 1.26
SHC1-211ENST00000490667 SNAPC4Q5SXM2 1469 aa22.93■■□□□ 1.26
SHC1-211ENST00000490667 TOP2BQ02880 1626 aa22.93■■□□□ 1.26
SHC1-211ENST00000490667 SYNJ1O43426 1573 aa22.92■■□□□ 1.26
SHC1-211ENST00000490667 MAGI1Q96QZ7 1491 aaPredicted RBP22.89■■□□□ 1.25
SHC1-211ENST00000490667 BIVM-ERCC5R4GMW8 1640 aa22.88■■□□□ 1.25
SHC1-211ENST00000490667 SYNJ2O15056 1496 aa22.82■■□□□ 1.24
SHC1-211ENST00000490667 CHD1O14646 1710 aa22.82■■□□□ 1.24
SHC1-211ENST00000490667 ABCA5Q8WWZ7 1642 aa22.8■■□□□ 1.24
SHC1-211ENST00000490667 ARHGEF11O15085 1522 aa22.75■■□□□ 1.23
SHC1-211ENST00000490667 RIMBP3CA6NJZ7 1639 aa22.73■■□□□ 1.23
SHC1-211ENST00000490667 RIMBP3BA6NNM3 1639 aa22.73■■□□□ 1.23
SHC1-211ENST00000490667 RIMBP3Q9UFD9 1639 aa22.73■■□□□ 1.23
SHC1-211ENST00000490667 PBRM1Q86U86 1689 aa22.72■■□□□ 1.23
SHC1-211ENST00000490667 CYB5RLQ6IPT4 315 aa22.71■■□□□ 1.23
SHC1-211ENST00000490667 FHAD1B1AJZ9 1412 aa22.67■■□□□ 1.22
SHC1-211ENST00000490667 ERICH3Q5RHP9 1530 aa22.66■■□□□ 1.22
SHC1-211ENST00000490667 CLASP1Q7Z460 1538 aa22.66■■□□□ 1.22
SHC1-211ENST00000490667 GRIN2AQ12879 1464 aa22.64■■□□□ 1.21
SHC1-211ENST00000490667 ADAMTS12P58397 1594 aa22.61■■□□□ 1.21
SHC1-211ENST00000490667 KIF27Q86VH2 1401 aa22.6■■□□□ 1.21
SHC1-211ENST00000490667 IGF1RP08069 1367 aa22.59■■□□□ 1.21
SHC1-211ENST00000490667 ARAP1Q96P48 1450 aa22.57■■□□□ 1.2
SHC1-211ENST00000490667 NUP160Q12769 1436 aa22.56■■□□□ 1.2
SHC1-211ENST00000490667 CEP170Q5SW79 1584 aa22.49■■□□□ 1.19
SHC1-211ENST00000490667 JPH4Q96JJ6 628 aa22.45■■□□□ 1.18
SHC1-211ENST00000490667 CARMIL1Q5VZK9 1371 aa22.43■■□□□ 1.18
SHC1-211ENST00000490667 PRG4Q92954 1404 aaPredicted RBP22.36■■□□□ 1.17
SHC1-211ENST00000490667 ERCC6L2Q5T890 1561 aa22.36■■□□□ 1.17
SHC1-211ENST00000490667 CUL7Q14999 1698 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms