RNA–Protein interactions for RNA: ENST00000490258.1

CRNKL1-203, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 2

Gene CRNKL1, Length 733 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-203ENST00000490258 AEBP2Q6ZN18 517 aaPredicted RBP20.03■□□□□ 0.8
CRNKL1-203ENST00000490258 CHIC1Q5VXU3 224 aa18.73■□□□□ 0.59
CRNKL1-203ENST00000490258 SENP3Q9H4L4 574 aaPredicted RBP17.24■□□□□ 0.35
CRNKL1-203ENST00000490258 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.29
CRNKL1-203ENST00000490258 POTEDQ86YR6 584 aa16.33■□□□□ 0.2
CRNKL1-203ENST00000490258 FOXD1Q16676 465 aa16.14■□□□□ 0.17
CRNKL1-203ENST00000490258 MSH5O43196 834 aa15.42■□□□□ 0.06
CRNKL1-203ENST00000490258 PIAS4Q8N2W9 510 aaPredicted RBP14.91□□□□□ -0.02
CRNKL1-203ENST00000490258 PPP6R1Q9UPN7 881 aa14.5□□□□□ -0.09
CRNKL1-203ENST00000490258 ADRA2BP18089 450 aa14.41□□□□□ -0.1
CRNKL1-203ENST00000490258 PLPPR3Q6T4P5 718 aa14.28□□□□□ -0.12
CRNKL1-203ENST00000490258 CACNB1Q02641 598 aaPredicted RBP13.7□□□□□ -0.22
CRNKL1-203ENST00000490258 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
CRNKL1-203ENST00000490258 MAPK8IP2Q13387 824 aaPredicted RBP13.47□□□□□ -0.25
CRNKL1-203ENST00000490258 SCAF1Q9H7N4 1312 aaKnown RBP13.21□□□□□ -0.29
CRNKL1-203ENST00000490258 RNF39Q9H2S5 420 aa13.08□□□□□ -0.32
CRNKL1-203ENST00000490258 DCAF8L1A6NGE4 600 aa13.03□□□□□ -0.32
CRNKL1-203ENST00000490258 C1QBPQ07021 282 aaKnown RBP12.86□□□□□ -0.35
CRNKL1-203ENST00000490258 HOXD11P31277 338 aaPredicted RBP12.74□□□□□ -0.37
CRNKL1-203ENST00000490258 POTEHQ6S545 545 aa12.66□□□□□ -0.38
CRNKL1-203ENST00000490258 DNAJC5BQ9UF47 199 aa12.47□□□□□ -0.41
CRNKL1-203ENST00000490258 RNF216Q9NWF9 866 aaPredicted RBP12.45□□□□□ -0.42
CRNKL1-203ENST00000490258 PPP4R3CPQ6ZMV5 832 aa12.41□□□□□ -0.42
CRNKL1-203ENST00000490258 CNKSR2Q8WXI2 1034 aa12.36□□□□□ -0.43
CRNKL1-203ENST00000490258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.15□□□□□ -0.462e-6■■■■□ 20.9
CRNKL1-203ENST00000490258 DSG3P32926 999 aa11.98□□□□□ -0.49
CRNKL1-203ENST00000490258 CAPN15O75808 1086 aa11.88□□□□□ -0.51
CRNKL1-203ENST00000490258 SPINK5Q9NQ38 1064 aaPredicted RBP11.85□□□□□ -0.51
CRNKL1-203ENST00000490258 U3KPZ7 1027 aaPredicted RBP11.79□□□□□ -0.52
CRNKL1-203ENST00000490258 NCBP3Q53F19 620 aaKnown RBP11.72□□□□□ -0.53
CRNKL1-203ENST00000490258 ABCB7O75027 752 aa11.53□□□□□ -0.56
CRNKL1-203ENST00000490258 NPM3O75607 178 aaKnown RBP11.53□□□□□ -0.56
CRNKL1-203ENST00000490258 CHRDL2Q6WN34 429 aa11.52□□□□□ -0.57
CRNKL1-203ENST00000490258 TRHP20396 242 aaPredicted RBP11.51□□□□□ -0.57
CRNKL1-203ENST00000490258 SP7Q8TDD2 431 aaPredicted RBP11.51□□□□□ -0.57
CRNKL1-203ENST00000490258 RBM42Q9BTD8 480 aaKnown RBP11.47□□□□□ -0.57
CRNKL1-203ENST00000490258 ZNF219Q9P2Y4 722 aaPredicted RBP11.46□□□□□ -0.57
CRNKL1-203ENST00000490258 APLP2Q06481 763 aa11.41□□□□□ -0.58
CRNKL1-203ENST00000490258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.22□□□□□ -0.61
CRNKL1-203ENST00000490258 HNRNPUL2Q1KMD3 747 aaKnown RBP11.22□□□□□ -0.61
CRNKL1-203ENST00000490258 SLC4A2P04920 1241 aa11.21□□□□□ -0.61
CRNKL1-203ENST00000490258 SAMD1Q6SPF0 538 aaPredicted RBP11.11□□□□□ -0.63
CRNKL1-203ENST00000490258 HAX1O00165 279 aa11.09□□□□□ -0.63
CRNKL1-203ENST00000490258 PIP4P2Q8N4L2 257 aa11.07□□□□□ -0.64
CRNKL1-203ENST00000490258 AKT1S1Q96B36 256 aa11.04□□□□□ -0.64
CRNKL1-203ENST00000490258 POLA2Q14181 598 aa11.02□□□□□ -0.65
CRNKL1-203ENST00000490258 REM2Q8IYK8 340 aaPredicted RBP10.93□□□□□ -0.66
CRNKL1-203ENST00000490258 FXR2P51116 673 aaKnown RBP eCLIP10.88□□□□□ -0.67
CRNKL1-203ENST00000490258 EVX2Q03828 476 aa10.87□□□□□ -0.67
CRNKL1-203ENST00000490258 PITPNM1O00562 1244 aa10.82□□□□□ -0.68
CRNKL1-203ENST00000490258 LHX8Q68G74 356 aa10.78□□□□□ -0.68
CRNKL1-203ENST00000490258 ZBTB12Q9Y330 459 aaPredicted RBP10.75□□□□□ -0.69
CRNKL1-203ENST00000490258 PLSCR2Q9NRY7 297 aa10.74□□□□□ -0.69
CRNKL1-203ENST00000490258 MYCNP04198 464 aaPredicted RBP10.69□□□□□ -0.7
CRNKL1-203ENST00000490258 OSCARQ8IYS5 282 aa10.69□□□□□ -0.7
CRNKL1-203ENST00000490258 KCNA4P22459 653 aa10.63□□□□□ -0.71
CRNKL1-203ENST00000490258 GABBR2O75899 941 aa10.6□□□□□ -0.71
CRNKL1-203ENST00000490258 C19orf67A6NJJ6 358 aa10.57□□□□□ -0.72
CRNKL1-203ENST00000490258 PRKAR2AP13861 404 aaKnown RBP10.54□□□□□ -0.72
CRNKL1-203ENST00000490258 ATF5Q9Y2D1 282 aaPredicted RBP10.48□□□□□ -0.73
CRNKL1-203ENST00000490258 CLEC11AQ9Y240 323 aa10.38□□□□□ -0.75
CRNKL1-203ENST00000490258 POTEIP0CG38 1075 aa10.36□□□□□ -0.75
CRNKL1-203ENST00000490258 SPDYE1Q8NFV5 336 aaPredicted RBP10.36□□□□□ -0.75
CRNKL1-203ENST00000490258 SPDYE2BA6NHP3 402 aa10.35□□□□□ -0.75
CRNKL1-203ENST00000490258 SPDYE6P0CI01 402 aa10.35□□□□□ -0.75
CRNKL1-203ENST00000490258 SPDYE2Q495Y8 402 aa10.35□□□□□ -0.75
CRNKL1-203ENST00000490258 CHADLQ6NUI6 762 aa10.25□□□□□ -0.77
CRNKL1-203ENST00000490258 POTEMA6NI47 508 aa10.19□□□□□ -0.78
CRNKL1-203ENST00000490258 CLCN6P51797 869 aa10.19□□□□□ -0.78
CRNKL1-203ENST00000490258 DCBLD2Q96PD2 775 aa10.17□□□□□ -0.78
CRNKL1-203ENST00000490258 FOXD4L1Q9NU39 408 aa10.17□□□□□ -0.78
CRNKL1-203ENST00000490258 CD44P16070 742 aaKnown RBP10.16□□□□□ -0.78
CRNKL1-203ENST00000490258 FBLN2P98095 1184 aa10.16□□□□□ -0.78
CRNKL1-203ENST00000490258 POTEGQ6S5H5 508 aa10.13□□□□□ -0.79
CRNKL1-203ENST00000490258 OTUD5Q96G74 571 aa10.13□□□□□ -0.79
CRNKL1-203ENST00000490258 SSUH2Q9Y2M2 353 aa10.12□□□□□ -0.79
CRNKL1-203ENST00000490258 PRR29P0C7W0 189 aa10.1□□□□□ -0.79
CRNKL1-203ENST00000490258 ZNF692Q9BU19 519 aaPredicted RBP10.1□□□□□ -0.79
CRNKL1-203ENST00000490258 PCDH10Q9P2E7 1040 aa10.09□□□□□ -0.79
CRNKL1-203ENST00000490258 FARP1Q9Y4F1 1045 aaPredicted RBP10.03□□□□□ -0.8
CRNKL1-203ENST00000490258 POTEB2H3BUK9 544 aa10□□□□□ -0.81
CRNKL1-203ENST00000490258 MKRN4PQ13434 485 aaPredicted RBP9.97□□□□□ -0.81
CRNKL1-203ENST00000490258 ZNF579Q8NAF0 562 aaKnown RBP9.97□□□□□ -0.81
CRNKL1-203ENST00000490258 ATXN8OSP0DMR3 200 aa9.93□□□□□ -0.82
CRNKL1-203ENST00000490258 PABPN1Q86U42 306 aaKnown RBP eCLIP9.92□□□□□ -0.82
CRNKL1-203ENST00000490258 ZRANB1Q9UGI0 708 aa9.9□□□□□ -0.82
CRNKL1-203ENST00000490258 GALR2O43603 387 aaPredicted RBP9.89□□□□□ -0.83
CRNKL1-203ENST00000490258 SLC4A1APQ9BWU0 796 aaKnown RBP9.89□□□□□ -0.83
CRNKL1-203ENST00000490258 LCE2DQ5TA82 110 aaPredicted RBP9.79□□□□□ -0.84
CRNKL1-203ENST00000490258 PELP1Q8IZL8 1130 aaKnown RBP9.77□□□□□ -0.85
CRNKL1-203ENST00000490258 FAM163AQ96GL9 167 aaPredicted RBP9.76□□□□□ -0.85
CRNKL1-203ENST00000490258 ZBTB22O15209 634 aa9.74□□□□□ -0.85
CRNKL1-203ENST00000490258 MAMSTRQ6ZN01 415 aa9.74□□□□□ -0.85
CRNKL1-203ENST00000490258 POTEJP0CG39 1038 aa9.72□□□□□ -0.85
CRNKL1-203ENST00000490258 METRNQ9UJH8 293 aa9.71□□□□□ -0.86
CRNKL1-203ENST00000490258 PHF12Q96QT6 1004 aa9.69□□□□□ -0.86
CRNKL1-203ENST00000490258 PAK3O75914 559 aaPredicted RBP9.67□□□□□ -0.86
CRNKL1-203ENST00000490258 C7P10643 843 aa9.67□□□□□ -0.86
CRNKL1-203ENST00000490258 SLC39A7Q92504 469 aa9.67□□□□□ -0.86
CRNKL1-203ENST00000490258 CREBZFQ9NS37 354 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms