RNA–Protein interactions for RNA: ENST00000490062.1

ERCC3-207, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 4

Gene ERCC3, Length 576 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-207ENST00000490062 NISCHQ9Y2I1 1504 aa42.05■■■■■ 4.32
ERCC3-207ENST00000490062 CCDC180Q9P1Z9 1646 aa37.3■■■■□ 3.56
ERCC3-207ENST00000490062 ABCC9O60706 1549 aa36.01■■■■□ 3.36
ERCC3-207ENST00000490062 ZCCHC6Q5VYS8 1495 aaKnown RBP35.13■■■■□ 3.21
ERCC3-207ENST00000490062 MYO15BQ96JP2 1530 aa35.01■■■■□ 3.19
ERCC3-207ENST00000490062 NACADO15069 1562 aa34.99■■■■□ 3.19
ERCC3-207ENST00000490062 DCAF1Q9Y4B6 1507 aa34.94■■■■□ 3.18
ERCC3-207ENST00000490062 RB1CC1Q8TDY2 1594 aa34.9■■■■□ 3.18
ERCC3-207ENST00000490062 DCAF8L2P0C7V8 631 aa34.72■■■■□ 3.15
ERCC3-207ENST00000490062 UNC13AQ9UPW8 1703 aa34.08■■■■□ 3.05
ERCC3-207ENST00000490062 SCRIBQ14160 1630 aa33.89■■■■□ 3.02
ERCC3-207ENST00000490062 BICRAQ9NZM4 1560 aa33.85■■■■□ 3.01
ERCC3-207ENST00000490062 SHROOM4Q9ULL8 1493 aa33.67■■■□□ 2.98
ERCC3-207ENST00000490062 PABPN1Q86U42 306 aaKnown RBP eCLIP33.64■■■□□ 2.98
ERCC3-207ENST00000490062 EIF4G1Q04637 1599 aaKnown RBP32.91■■■□□ 2.86
ERCC3-207ENST00000490062 DNAJC5BQ9UF47 199 aa32.78■■■□□ 2.84
ERCC3-207ENST00000490062 CECR2Q9BXF3 1484 aa32.66■■■□□ 2.82
ERCC3-207ENST00000490062 CC2D2AQ9P2K1 1620 aa32.66■■■□□ 2.82
ERCC3-207ENST00000490062 BAZ1AQ9NRL2 1556 aaPredicted RBP32.58■■■□□ 2.81
ERCC3-207ENST00000490062 SMARCA4P51532 1647 aa32.55■■■□□ 2.8
ERCC3-207ENST00000490062 MROH2BQ7Z745 1585 aa32.36■■■□□ 2.77
ERCC3-207ENST00000490062 PEG3Q9GZU2 1588 aa32.33■■■□□ 2.77
ERCC3-207ENST00000490062 ATAD2BQ9ULI0 1458 aa32.3■■■□□ 2.76
ERCC3-207ENST00000490062 SMARCA2P51531 1590 aa32.3■■■□□ 2.76
ERCC3-207ENST00000490062 NCAPD3P42695 1498 aa32.29■■■□□ 2.76
ERCC3-207ENST00000490062 HMGXB3Q12766 1538 aa32.16■■■□□ 2.74
ERCC3-207ENST00000490062 RSF1Q96T23 1441 aaPredicted RBP32.14■■■□□ 2.74
ERCC3-207ENST00000490062 BAZ1BQ9UIG0 1483 aaKnown RBP32.01■■■□□ 2.71
ERCC3-207ENST00000490062 WIZO95785 1651 aa31.99■■■□□ 2.71
ERCC3-207ENST00000490062 TOP2AP11388 1531 aaKnown RBP31.75■■■□□ 2.67
ERCC3-207ENST00000490062 LAMC3Q9Y6N6 1575 aa31.36■■■□□ 2.61
ERCC3-207ENST00000490062 SUPT5HO00267 1087 aaKnown RBP31.34■■■□□ 2.61
ERCC3-207ENST00000490062 CCDC88BA6NC98 1476 aa31.33■■■□□ 2.61
ERCC3-207ENST00000490062 CADPSQ9ULU8 1353 aa31.31■■■□□ 2.6
ERCC3-207ENST00000490062 NESP48681 1621 aa31.27■■■□□ 2.6
ERCC3-207ENST00000490062 CFTRP13569 1480 aa31.22■■■□□ 2.59
ERCC3-207ENST00000490062 PDS5BQ9NTI5 1447 aa31.1■■■□□ 2.57
ERCC3-207ENST00000490062 ERCC6Q03468 1493 aa31.01■■■□□ 2.56
ERCC3-207ENST00000490062 PRDM2Q13029 1718 aa31■■■□□ 2.55
ERCC3-207ENST00000490062 KIF21AQ7Z4S6 1674 aa30.93■■■□□ 2.54
ERCC3-207ENST00000490062 FANCD2Q9BXW9 1451 aa30.92■■■□□ 2.54
ERCC3-207ENST00000490062 CEP164Q9UPV0 1460 aa30.85■■■□□ 2.53
ERCC3-207ENST00000490062 THOC2Q8NI27 1593 aaKnown RBP30.82■■■□□ 2.52
ERCC3-207ENST00000490062 MRC2Q9UBG0 1479 aa30.76■■■□□ 2.51
ERCC3-207ENST00000490062 CUX2O14529 1486 aa30.71■■■□□ 2.51
ERCC3-207ENST00000490062 WDR62O43379 1518 aa30.68■■■□□ 2.5
ERCC3-207ENST00000490062 URB2Q14146 1524 aaKnown RBP30.59■■■□□ 2.49
ERCC3-207ENST00000490062 ABCC8Q09428 1581 aa30.56■■■□□ 2.48
ERCC3-207ENST00000490062 DNMBPQ6XZF7 1577 aa30.49■■■□□ 2.47
ERCC3-207ENST00000490062 TOPBP1Q92547 1522 aa30.47■■■□□ 2.47
ERCC3-207ENST00000490062 CUX1P39880 1505 aa30.35■■■□□ 2.45
ERCC3-207ENST00000490062 WRNQ14191 1432 aaPredicted RBP eCLIP30.27■■■□□ 2.44
ERCC3-207ENST00000490062 POLA1P09884 1462 aaPredicted RBP30.24■■■□□ 2.43
ERCC3-207ENST00000490062 IFT140Q96RY7 1462 aa30.23■■■□□ 2.43
ERCC3-207ENST00000490062 BIVM-ERCC5R4GMW8 1640 aa30.22■■■□□ 2.43
ERCC3-207ENST00000490062 TOP2BQ02880 1626 aa30.21■■■□□ 2.43
ERCC3-207ENST00000490062 FGD5Q6ZNL6 1462 aa30.18■■■□□ 2.42
ERCC3-207ENST00000490062 SYNJ1O43426 1573 aa30.15■■■□□ 2.42
ERCC3-207ENST00000490062 TARBP1Q13395 1621 aaKnown RBP30.14■■■□□ 2.42
ERCC3-207ENST00000490062 SOGA1O94964 1423 aa30.08■■■□□ 2.41
ERCC3-207ENST00000490062 RAD54L2Q9Y4B4 1467 aa30.03■■■□□ 2.4
ERCC3-207ENST00000490062 WDR97A6NE52 1622 aa30.02■■■□□ 2.4
ERCC3-207ENST00000490062 ZNF608Q9ULD9 1512 aaPredicted RBP29.99■■■□□ 2.39
ERCC3-207ENST00000490062 ABCA10Q8WWZ4 1543 aa29.98■■■□□ 2.39
ERCC3-207ENST00000490062 EIF4G3O43432 1585 aaKnown RBP29.92■■■□□ 2.38
ERCC3-207ENST00000490062 AQRO60306 1485 aaKnown RBP eCLIP29.85■■■□□ 2.373e-9■■■■■ 47.4
ERCC3-207ENST00000490062 TDRD9Q8NDG6 1382 aaKnown RBP29.83■■■□□ 2.37
ERCC3-207ENST00000490062 ABCA5Q8WWZ7 1642 aa29.82■■■□□ 2.36
ERCC3-207ENST00000490062 GAPVD1Q14C86 1478 aa29.76■■■□□ 2.35
ERCC3-207ENST00000490062 GRIN2BQ13224 1484 aa29.74■■■□□ 2.35
ERCC3-207ENST00000490062 TRIM41Q8WV44 630 aa29.66■■■□□ 2.34
ERCC3-207ENST00000490062 MAGI1Q96QZ7 1491 aaPredicted RBP29.66■■■□□ 2.34
ERCC3-207ENST00000490062 PBRM1Q86U86 1689 aa29.66■■■□□ 2.34
ERCC3-207ENST00000490062 ERICH3Q5RHP9 1530 aa29.63■■■□□ 2.33
ERCC3-207ENST00000490062 KIF27Q86VH2 1401 aa29.62■■■□□ 2.33
ERCC3-207ENST00000490062 SNAPC4Q5SXM2 1469 aa29.61■■■□□ 2.33
ERCC3-207ENST00000490062 CHIC1Q5VXU3 224 aa29.56■■■□□ 2.32
ERCC3-207ENST00000490062 SYNJ2O15056 1496 aa29.51■■■□□ 2.31
ERCC3-207ENST00000490062 ADAMTS12P58397 1594 aa29.48■■■□□ 2.31
ERCC3-207ENST00000490062 IGF1RP08069 1367 aa29.48■■■□□ 2.31
ERCC3-207ENST00000490062 FHAD1B1AJZ9 1412 aa29.46■■■□□ 2.31
ERCC3-207ENST00000490062 CHD1O14646 1710 aa29.45■■■□□ 2.3
ERCC3-207ENST00000490062 OSCARQ8IYS5 282 aa29.41■■■□□ 2.3
ERCC3-207ENST00000490062 CUL7Q14999 1698 aa29.4■■■□□ 2.3
ERCC3-207ENST00000490062 CHMP7Q8WUX9 453 aaPredicted RBP29.38■■■□□ 2.29
ERCC3-207ENST00000490062 RUSC2Q8N2Y8 1516 aa29.37■■■□□ 2.29
ERCC3-207ENST00000490062 GRIN2AQ12879 1464 aa29.35■■■□□ 2.29
ERCC3-207ENST00000490062 DNAJC5Q9H3Z4 198 aa29.34■■■□□ 2.29
ERCC3-207ENST00000490062 EEA1Q15075 1411 aa29.33■■■□□ 2.29
ERCC3-207ENST00000490062 FBLN2P98095 1184 aa29.3■■■□□ 2.28
ERCC3-207ENST00000490062 CARMIL1Q5VZK9 1371 aa29.27■■■□□ 2.28
ERCC3-207ENST00000490062 NUP160Q12769 1436 aa29.26■■■□□ 2.27
ERCC3-207ENST00000490062 CLASP1Q7Z460 1538 aa29.23■■■□□ 2.27
ERCC3-207ENST00000490062 PRXQ9BXM0 1461 aa29.18■■■□□ 2.26
ERCC3-207ENST00000490062 CEP170Q5SW79 1584 aa29.17■■■□□ 2.26
ERCC3-207ENST00000490062 RAPGEF2Q9Y4G8 1499 aa29.16■■■□□ 2.26
ERCC3-207ENST00000490062 CSRNP3Q8WYN3 585 aa29.14■■■□□ 2.26
ERCC3-207ENST00000490062 KIAA0586Q9BVV6 1533 aa29.04■■■□□ 2.24
ERCC3-207ENST00000490062 SHROOM2Q13796 1616 aa29.01■■■□□ 2.23
ERCC3-207ENST00000490062 KIF21BO75037 1637 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms