RNA–Protein interactions for RNA: ENST00000489144.5

POLR2J3-205, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 2

Gene POLR2J3, Length 2,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-205ENST00000489144 NISCHQ9Y2I1 1504 aa40.04■■■■■ 4
POLR2J3-205ENST00000489144 CCDC180Q9P1Z9 1646 aa34.6■■■■□ 3.13
POLR2J3-205ENST00000489144 DCAF8L2P0C7V8 631 aa33.68■■■□□ 2.98
POLR2J3-205ENST00000489144 ZCCHC6Q5VYS8 1495 aaKnown RBP33.62■■■□□ 2.97
POLR2J3-205ENST00000489144 SHROOM4Q9ULL8 1493 aa33.38■■■□□ 2.93
POLR2J3-205ENST00000489144 ABCC9O60706 1549 aa33.23■■■□□ 2.91
POLR2J3-205ENST00000489144 DCAF1Q9Y4B6 1507 aa32.78■■■□□ 2.84
POLR2J3-205ENST00000489144 SCRIBQ14160 1630 aa32.34■■■□□ 2.77
POLR2J3-205ENST00000489144 NACADO15069 1562 aa32.27■■■□□ 2.76
POLR2J3-205ENST00000489144 MYO15BQ96JP2 1530 aa32.27■■■□□ 2.76
POLR2J3-205ENST00000489144 SUPT5HO00267 1087 aaKnown RBP32.11■■■□□ 2.73
POLR2J3-205ENST00000489144 RB1CC1Q8TDY2 1594 aa32.06■■■□□ 2.72
POLR2J3-205ENST00000489144 UNC13AQ9UPW8 1703 aa31.58■■■□□ 2.65
POLR2J3-205ENST00000489144 PABPN1Q86U42 306 aaKnown RBP eCLIP31.53■■■□□ 2.64
POLR2J3-205ENST00000489144 CECR2Q9BXF3 1484 aa31.37■■■□□ 2.61
POLR2J3-205ENST00000489144 BICRAQ9NZM4 1560 aa31.23■■■□□ 2.59
POLR2J3-205ENST00000489144 RSF1Q96T23 1441 aaPredicted RBP31.22■■■□□ 2.59
POLR2J3-205ENST00000489144 MROH2BQ7Z745 1585 aa31.12■■■□□ 2.57
POLR2J3-205ENST00000489144 WIZO95785 1651 aa30.9■■■□□ 2.54
POLR2J3-205ENST00000489144 BAZ1AQ9NRL2 1556 aaPredicted RBP30.84■■■□□ 2.53
POLR2J3-205ENST00000489144 SMARCA4P51532 1647 aa30.77■■■□□ 2.52
POLR2J3-205ENST00000489144 PELP1Q8IZL8 1130 aaKnown RBP30.7■■■□□ 2.51
POLR2J3-205ENST00000489144 CHIC1Q5VXU3 224 aa30.54■■■□□ 2.48
POLR2J3-205ENST00000489144 TOP2AP11388 1531 aaKnown RBP30.34■■■□□ 2.45
POLR2J3-205ENST00000489144 EIF4G1Q04637 1599 aaKnown RBP30.29■■■□□ 2.44
POLR2J3-205ENST00000489144 ATAD2BQ9ULI0 1458 aa30.28■■■□□ 2.44
POLR2J3-205ENST00000489144 CCDC88BA6NC98 1476 aa30.2■■■□□ 2.43
POLR2J3-205ENST00000489144 PEG3Q9GZU2 1588 aa30.17■■■□□ 2.42
POLR2J3-205ENST00000489144 SMARCA2P51531 1590 aa30.16■■■□□ 2.42
POLR2J3-205ENST00000489144 BAZ1BQ9UIG0 1483 aaKnown RBP30.14■■■□□ 2.42
POLR2J3-205ENST00000489144 MYT1Q01538 1121 aa29.99■■■□□ 2.39
POLR2J3-205ENST00000489144 TRIM41Q8WV44 630 aa29.94■■■□□ 2.38
POLR2J3-205ENST00000489144 CC2D2AQ9P2K1 1620 aa29.88■■■□□ 2.37
POLR2J3-205ENST00000489144 NCAPD3P42695 1498 aa29.86■■■□□ 2.37
POLR2J3-205ENST00000489144 ABCC8Q09428 1581 aa29.79■■■□□ 2.36
POLR2J3-205ENST00000489144 HMGXB3Q12766 1538 aa29.76■■■□□ 2.36
POLR2J3-205ENST00000489144 FAM9AQ8IZU1 332 aaPredicted RBP29.75■■■□□ 2.35
POLR2J3-205ENST00000489144 LOC105371045A0A1W2PR82 267 aa29.65■■■□□ 2.34
POLR2J3-205ENST00000489144 EHMT2Q96KQ7 1210 aa29.62■■■□□ 2.33
POLR2J3-205ENST00000489144 HRCP23327 699 aa29.59■■■□□ 2.33
POLR2J3-205ENST00000489144 DNAJC5BQ9UF47 199 aa29.57■■■□□ 2.32
POLR2J3-205ENST00000489144 WRNQ14191 1432 aaPredicted RBP eCLIP29.37■■■□□ 2.291e-6■■■■■ 58.5
POLR2J3-205ENST00000489144 SYNJ1O43426 1573 aa29.31■■■□□ 2.28
POLR2J3-205ENST00000489144 CFTRP13569 1480 aa29.29■■■□□ 2.28
POLR2J3-205ENST00000489144 SOGA1O94964 1423 aa29.24■■■□□ 2.27
POLR2J3-205ENST00000489144 NESP48681 1621 aa29.23■■■□□ 2.27
POLR2J3-205ENST00000489144 CADPSQ9ULU8 1353 aa29.22■■■□□ 2.27
POLR2J3-205ENST00000489144 RUSC2Q8N2Y8 1516 aa29.18■■■□□ 2.26
POLR2J3-205ENST00000489144 CUX1P39880 1505 aa29.04■■■□□ 2.24
POLR2J3-205ENST00000489144 TOP2BQ02880 1626 aa29■■■□□ 2.23
POLR2J3-205ENST00000489144 PRDM2Q13029 1718 aa29■■■□□ 2.23
POLR2J3-205ENST00000489144 FANCD2Q9BXW9 1451 aa28.97■■■□□ 2.23
POLR2J3-205ENST00000489144 BIVM-ERCC5R4GMW8 1640 aa28.91■■■□□ 2.22
POLR2J3-205ENST00000489144 CSRNP3Q8WYN3 585 aa28.89■■■□□ 2.21
POLR2J3-205ENST00000489144 LAMC3Q9Y6N6 1575 aa28.8■■■□□ 2.2
POLR2J3-205ENST00000489144 CEP164Q9UPV0 1460 aa28.73■■■□□ 2.19
POLR2J3-205ENST00000489144 UBTFP17480 764 aaKnown RBP28.73■■■□□ 2.19
POLR2J3-205ENST00000489144 FGD5Q6ZNL6 1462 aa28.72■■■□□ 2.19
POLR2J3-205ENST00000489144 EEA1Q15075 1411 aa28.72■■■□□ 2.19
POLR2J3-205ENST00000489144 KIF21AQ7Z4S6 1674 aa28.7■■■□□ 2.19
POLR2J3-205ENST00000489144 PPARGC1BQ86YN6 1023 aaKnown RBP28.69■■■□□ 2.18
POLR2J3-205ENST00000489144 PDS5BQ9NTI5 1447 aa28.66■■■□□ 2.18
POLR2J3-205ENST00000489144 SCAF1Q9H7N4 1312 aaKnown RBP28.64■■■□□ 2.18
POLR2J3-205ENST00000489144 TOPBP1Q92547 1522 aa28.64■■■□□ 2.18
POLR2J3-205ENST00000489144 URB2Q14146 1524 aaKnown RBP28.64■■■□□ 2.18
POLR2J3-205ENST00000489144 RAD54L2Q9Y4B4 1467 aa28.63■■■□□ 2.17
POLR2J3-205ENST00000489144 RANGAP1P46060 587 aaPredicted RBP28.62■■■□□ 2.17
POLR2J3-205ENST00000489144 CUX2O14529 1486 aa28.6■■■□□ 2.17
POLR2J3-205ENST00000489144 TTBK1Q5TCY1 1321 aaPredicted RBP28.6■■■□□ 2.17
POLR2J3-205ENST00000489144 DNMBPQ6XZF7 1577 aa28.6■■■□□ 2.17
POLR2J3-205ENST00000489144 RAPGEF2Q9Y4G8 1499 aa28.57■■■□□ 2.16
POLR2J3-205ENST00000489144 KIF27Q86VH2 1401 aa28.55■■■□□ 2.16
POLR2J3-205ENST00000489144 POLA1P09884 1462 aaPredicted RBP28.55■■■□□ 2.16
POLR2J3-205ENST00000489144 GOLGA3Q08378 1498 aa28.55■■■□□ 2.16
POLR2J3-205ENST00000489144 CEP162Q5TB80 1403 aa28.47■■■□□ 2.15
POLR2J3-205ENST00000489144 KIF21BO75037 1637 aa28.45■■■□□ 2.15
POLR2J3-205ENST00000489144 TNIKQ9UKE5 1360 aa28.45■■■□□ 2.15
POLR2J3-205ENST00000489144 ERCC6Q03468 1493 aa28.38■■■□□ 2.13
POLR2J3-205ENST00000489144 IGF1RP08069 1367 aa28.37■■■□□ 2.13
POLR2J3-205ENST00000489144 TDRD9Q8NDG6 1382 aaKnown RBP28.37■■■□□ 2.13
POLR2J3-205ENST00000489144 PCGF6Q9BYE7 350 aa28.37■■■□□ 2.13
POLR2J3-205ENST00000489144 PRXQ9BXM0 1461 aa28.36■■■□□ 2.13
POLR2J3-205ENST00000489144 MRC2Q9UBG0 1479 aa28.32■■■□□ 2.12
POLR2J3-205ENST00000489144 ABCA10Q8WWZ4 1543 aa28.31■■■□□ 2.12
POLR2J3-205ENST00000489144 CARMIL1Q5VZK9 1371 aa28.24■■■□□ 2.11
POLR2J3-205ENST00000489144 CLIP1P30622 1438 aa28.21■■■□□ 2.11
POLR2J3-205ENST00000489144 ERICH3Q5RHP9 1530 aa28.2■■■□□ 2.1
POLR2J3-205ENST00000489144 WDR97A6NE52 1622 aa28.19■■■□□ 2.1
POLR2J3-205ENST00000489144 TARBP1Q13395 1621 aaKnown RBP28.15■■■□□ 2.1
POLR2J3-205ENST00000489144 AQRO60306 1485 aaKnown RBP eCLIP28.14■■■□□ 2.14e-8■■■■□ 22.5
POLR2J3-205ENST00000489144 GAPVD1Q14C86 1478 aa28.12■■■□□ 2.09
POLR2J3-205ENST00000489144 WDR62O43379 1518 aa28.11■■■□□ 2.09
POLR2J3-205ENST00000489144 ZNF608Q9ULD9 1512 aaPredicted RBP28.09■■■□□ 2.09
POLR2J3-205ENST00000489144 ABCA5Q8WWZ7 1642 aa28.08■■■□□ 2.09
POLR2J3-205ENST00000489144 THOC2Q8NI27 1593 aaKnown RBP28.07■■■□□ 2.08
POLR2J3-205ENST00000489144 TRIM26Q12899 539 aaPredicted RBP28.01■■■□□ 2.07
POLR2J3-205ENST00000489144 P3H3Q8IVL6 736 aa27.97■■■□□ 2.07
POLR2J3-205ENST00000489144 IFT140Q96RY7 1462 aa27.94■■■□□ 2.06
POLR2J3-205ENST00000489144 CUL7Q14999 1698 aa27.92■■■□□ 2.06
POLR2J3-205ENST00000489144 ARAP1Q96P48 1450 aa27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms