RNA–Protein interactions for RNA: ENST00000488910.1

ATG3-205, Transcript of autophagy related 3, humanhuman

TSL 2

Gene ATG3, Length 681 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3-205ENST00000488910 NISCHQ9Y2I1 1504 aa42.89■■■■■ 4.46
ATG3-205ENST00000488910 CCDC180Q9P1Z9 1646 aa38.24■■■■□ 3.71
ATG3-205ENST00000488910 ABCC9O60706 1549 aa37.71■■■■□ 3.63
ATG3-205ENST00000488910 RB1CC1Q8TDY2 1594 aa36.18■■■■□ 3.38
ATG3-205ENST00000488910 NACADO15069 1562 aa36.07■■■■□ 3.37
ATG3-205ENST00000488910 DCAF8L2P0C7V8 631 aa36.01■■■■□ 3.36
ATG3-205ENST00000488910 MYO15BQ96JP2 1530 aa35.78■■■■□ 3.32
ATG3-205ENST00000488910 ZCCHC6Q5VYS8 1495 aaKnown RBP35.63■■■■□ 3.29
ATG3-205ENST00000488910 DCAF1Q9Y4B6 1507 aa35.5■■■■□ 3.27
ATG3-205ENST00000488910 UNC13AQ9UPW8 1703 aa35.29■■■■□ 3.24
ATG3-205ENST00000488910 PABPN1Q86U42 306 aaKnown RBP eCLIP35.23■■■■□ 3.23
ATG3-205ENST00000488910 BICRAQ9NZM4 1560 aa35.05■■■■□ 3.2
ATG3-205ENST00000488910 DNAJC5BQ9UF47 199 aa34.95■■■■□ 3.19
ATG3-205ENST00000488910 SCRIBQ14160 1630 aa34.84■■■■□ 3.17
ATG3-205ENST00000488910 SHROOM4Q9ULL8 1493 aa34.72■■■■□ 3.15
ATG3-205ENST00000488910 EIF4G1Q04637 1599 aaKnown RBP34.17■■■■□ 3.06
ATG3-205ENST00000488910 CC2D2AQ9P2K1 1620 aa34.11■■■■□ 3.05
ATG3-205ENST00000488910 CECR2Q9BXF3 1484 aa33.95■■■■□ 3.03
ATG3-205ENST00000488910 SMARCA4P51532 1647 aa33.31■■■□□ 2.92
ATG3-205ENST00000488910 NCAPD3P42695 1498 aa33.31■■■□□ 2.92
ATG3-205ENST00000488910 BAZ1AQ9NRL2 1556 aaPredicted RBP33.26■■■□□ 2.92
ATG3-205ENST00000488910 ATAD2BQ9ULI0 1458 aa33.25■■■□□ 2.91
ATG3-205ENST00000488910 SMARCA2P51531 1590 aa33.2■■■□□ 2.91
ATG3-205ENST00000488910 HMGXB3Q12766 1538 aa33.07■■■□□ 2.88
ATG3-205ENST00000488910 MROH2BQ7Z745 1585 aa33.02■■■□□ 2.88
ATG3-205ENST00000488910 PEG3Q9GZU2 1588 aa33.02■■■□□ 2.88
ATG3-205ENST00000488910 BAZ1BQ9UIG0 1483 aaKnown RBP32.95■■■□□ 2.87
ATG3-205ENST00000488910 WIZO95785 1651 aa32.63■■■□□ 2.81
ATG3-205ENST00000488910 ERCC6Q03468 1493 aa32.56■■■□□ 2.8
ATG3-205ENST00000488910 RSF1Q96T23 1441 aaPredicted RBP32.56■■■□□ 2.8
ATG3-205ENST00000488910 NESP48681 1621 aa32.53■■■□□ 2.8
ATG3-205ENST00000488910 LAMC3Q9Y6N6 1575 aa32.45■■■□□ 2.79
ATG3-205ENST00000488910 CUX2O14529 1486 aa32.35■■■□□ 2.77
ATG3-205ENST00000488910 CADPSQ9ULU8 1353 aa32.32■■■□□ 2.77
ATG3-205ENST00000488910 PDS5BQ9NTI5 1447 aa32.29■■■□□ 2.76
ATG3-205ENST00000488910 TOP2AP11388 1531 aaKnown RBP32.28■■■□□ 2.76
ATG3-205ENST00000488910 KIF21AQ7Z4S6 1674 aa32.11■■■□□ 2.73
ATG3-205ENST00000488910 THOC2Q8NI27 1593 aaKnown RBP32.09■■■□□ 2.73
ATG3-205ENST00000488910 CFTRP13569 1480 aa32.04■■■□□ 2.72
ATG3-205ENST00000488910 CCDC88BA6NC98 1476 aa31.94■■■□□ 2.7
ATG3-205ENST00000488910 MRC2Q9UBG0 1479 aa31.92■■■□□ 2.7
ATG3-205ENST00000488910 FANCD2Q9BXW9 1451 aa31.91■■■□□ 2.7
ATG3-205ENST00000488910 CEP164Q9UPV0 1460 aa31.9■■■□□ 2.7
ATG3-205ENST00000488910 WDR62O43379 1518 aa31.81■■■□□ 2.68
ATG3-205ENST00000488910 DNAJC5Q9H3Z4 198 aa31.79■■■□□ 2.68
ATG3-205ENST00000488910 PRDM2Q13029 1718 aa31.72■■■□□ 2.67
ATG3-205ENST00000488910 URB2Q14146 1524 aaKnown RBP31.59■■■□□ 2.65
ATG3-205ENST00000488910 SUPT5HO00267 1087 aaKnown RBP31.51■■■□□ 2.63
ATG3-205ENST00000488910 ABCC8Q09428 1581 aa31.41■■■□□ 2.62
ATG3-205ENST00000488910 TOPBP1Q92547 1522 aa31.36■■■□□ 2.61
ATG3-205ENST00000488910 DNMBPQ6XZF7 1577 aa31.3■■■□□ 2.6
ATG3-205ENST00000488910 IFT140Q96RY7 1462 aa31.27■■■□□ 2.6
ATG3-205ENST00000488910 ZNF608Q9ULD9 1512 aaPredicted RBP31.12■■■□□ 2.57
ATG3-205ENST00000488910 POLA1P09884 1462 aaPredicted RBP31.07■■■□□ 2.56
ATG3-205ENST00000488910 TARBP1Q13395 1621 aaKnown RBP31.03■■■□□ 2.56
ATG3-205ENST00000488910 OSCARQ8IYS5 282 aa31.02■■■□□ 2.56
ATG3-205ENST00000488910 CUX1P39880 1505 aa30.99■■■□□ 2.55
ATG3-205ENST00000488910 SOGA1O94964 1423 aa30.98■■■□□ 2.55
ATG3-205ENST00000488910 EIF4G3O43432 1585 aaKnown RBP30.95■■■□□ 2.54
ATG3-205ENST00000488910 FGD5Q6ZNL6 1462 aa30.95■■■□□ 2.54
ATG3-205ENST00000488910 RAD54L2Q9Y4B4 1467 aa30.94■■■□□ 2.54
ATG3-205ENST00000488910 AQRO60306 1485 aaKnown RBP eCLIP30.93■■■□□ 2.54
ATG3-205ENST00000488910 TDRD9Q8NDG6 1382 aaKnown RBP30.83■■■□□ 2.53
ATG3-205ENST00000488910 WDR97A6NE52 1622 aa30.81■■■□□ 2.52
ATG3-205ENST00000488910 WRNQ14191 1432 aaPredicted RBP eCLIP30.71■■■□□ 2.51
ATG3-205ENST00000488910 ABCA10Q8WWZ4 1543 aa30.66■■■□□ 2.5
ATG3-205ENST00000488910 TOP2BQ02880 1626 aa30.65■■■□□ 2.5
ATG3-205ENST00000488910 FBLN2P98095 1184 aa30.65■■■□□ 2.5
ATG3-205ENST00000488910 GRIN2BQ13224 1484 aa30.64■■■□□ 2.5
ATG3-205ENST00000488910 BIVM-ERCC5R4GMW8 1640 aa30.64■■■□□ 2.5
ATG3-205ENST00000488910 CHD1O14646 1710 aa30.62■■■□□ 2.49
ATG3-205ENST00000488910 SNAPC4Q5SXM2 1469 aa30.61■■■□□ 2.49
ATG3-205ENST00000488910 GAPVD1Q14C86 1478 aa30.6■■■□□ 2.49
ATG3-205ENST00000488910 MAGI1Q96QZ7 1491 aaPredicted RBP30.6■■■□□ 2.49
ATG3-205ENST00000488910 SYNJ1O43426 1573 aa30.59■■■□□ 2.49
ATG3-205ENST00000488910 CHMP7Q8WUX9 453 aaPredicted RBP30.55■■■□□ 2.48
ATG3-205ENST00000488910 TRIM41Q8WV44 630 aa30.54■■■□□ 2.48
ATG3-205ENST00000488910 ABCA5Q8WWZ7 1642 aa30.51■■■□□ 2.48
ATG3-205ENST00000488910 PBRM1Q86U86 1689 aa30.49■■■□□ 2.47
ATG3-205ENST00000488910 SYNJ2O15056 1496 aa30.48■■■□□ 2.47
ATG3-205ENST00000488910 RIMBP3CA6NJZ7 1639 aa30.44■■■□□ 2.46
ATG3-205ENST00000488910 RIMBP3BA6NNM3 1639 aa30.44■■■□□ 2.46
ATG3-205ENST00000488910 RIMBP3Q9UFD9 1639 aa30.44■■■□□ 2.46
ATG3-205ENST00000488910 ARHGEF11O15085 1522 aa30.42■■■□□ 2.46
ATG3-205ENST00000488910 CLASP1Q7Z460 1538 aa30.31■■■□□ 2.44
ATG3-205ENST00000488910 ERICH3Q5RHP9 1530 aa30.29■■■□□ 2.44
ATG3-205ENST00000488910 FHAD1B1AJZ9 1412 aa30.25■■■□□ 2.43
ATG3-205ENST00000488910 ADAMTS12P58397 1594 aa30.24■■■□□ 2.43
ATG3-205ENST00000488910 CYB5RLQ6IPT4 315 aa30.22■■■□□ 2.43
ATG3-205ENST00000488910 GRIN2AQ12879 1464 aa30.22■■■□□ 2.43
ATG3-205ENST00000488910 ARAP1Q96P48 1450 aa30.14■■■□□ 2.42
ATG3-205ENST00000488910 NUP160Q12769 1436 aa30.12■■■□□ 2.41
ATG3-205ENST00000488910 KIF27Q86VH2 1401 aa30.12■■■□□ 2.41
ATG3-205ENST00000488910 CEP170Q5SW79 1584 aa30.06■■■□□ 2.4
ATG3-205ENST00000488910 IGF1RP08069 1367 aa30.05■■■□□ 2.4
ATG3-205ENST00000488910 CUL7Q14999 1698 aa29.93■■■□□ 2.38
ATG3-205ENST00000488910 SHROOM2Q13796 1616 aa29.9■■■□□ 2.38
ATG3-205ENST00000488910 JPH4Q96JJ6 628 aa29.88■■■□□ 2.37
ATG3-205ENST00000488910 CARMIL1Q5VZK9 1371 aa29.86■■■□□ 2.37
ATG3-205ENST00000488910 ERCC6L2Q5T890 1561 aa29.84■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms