RNA–Protein interactions for RNA: ENST00000487496.1

SPEN-205, Transcript of spen family transcriptional repressor, humanhuman

TSL 1 (best)

Gene SPEN, Length 543 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-205ENST00000487496 NISCHQ9Y2I1 1504 aa28.17■■■□□ 2.1
SPEN-205ENST00000487496 CCDC180Q9P1Z9 1646 aa25.08■■□□□ 1.61
SPEN-205ENST00000487496 ABCC9O60706 1549 aa24.84■■□□□ 1.57
SPEN-205ENST00000487496 RB1CC1Q8TDY2 1594 aa23.75■■□□□ 1.39
SPEN-205ENST00000487496 DCAF8L2P0C7V8 631 aa23.69■■□□□ 1.38
SPEN-205ENST00000487496 NACADO15069 1562 aa23.68■■□□□ 1.38
SPEN-205ENST00000487496 MYO15BQ96JP2 1530 aa23.47■■□□□ 1.35
SPEN-205ENST00000487496 ZCCHC6Q5VYS8 1495 aaKnown RBP23.41■■□□□ 1.34
SPEN-205ENST00000487496 DCAF1Q9Y4B6 1507 aa23.28■■□□□ 1.32
SPEN-205ENST00000487496 PABPN1Q86U42 306 aaKnown RBP eCLIP23.22■■□□□ 1.31
SPEN-205ENST00000487496 UNC13AQ9UPW8 1703 aa23.17■■□□□ 1.3
SPEN-205ENST00000487496 BICRAQ9NZM4 1560 aa23.06■■□□□ 1.28
SPEN-205ENST00000487496 DNAJC5BQ9UF47 199 aa23.06■■□□□ 1.28
SPEN-205ENST00000487496 SCRIBQ14160 1630 aa22.9■■□□□ 1.26
SPEN-205ENST00000487496 SHROOM4Q9ULL8 1493 aa22.78■■□□□ 1.24
SPEN-205ENST00000487496 EIF4G1Q04637 1599 aaKnown RBP22.47■■□□□ 1.19
SPEN-205ENST00000487496 CC2D2AQ9P2K1 1620 aa22.43■■□□□ 1.18
SPEN-205ENST00000487496 CECR2Q9BXF3 1484 aa22.34■■□□□ 1.17
SPEN-205ENST00000487496 NCAPD3P42695 1498 aa21.89■■□□□ 1.09
SPEN-205ENST00000487496 SMARCA4P51532 1647 aa21.88■■□□□ 1.09
SPEN-205ENST00000487496 ATAD2BQ9ULI0 1458 aa21.85■■□□□ 1.09
SPEN-205ENST00000487496 BAZ1AQ9NRL2 1556 aaPredicted RBP21.83■■□□□ 1.09
SPEN-205ENST00000487496 SMARCA2P51531 1590 aa21.79■■□□□ 1.08
SPEN-205ENST00000487496 HMGXB3Q12766 1538 aa21.71■■□□□ 1.07
SPEN-205ENST00000487496 MROH2BQ7Z745 1585 aa21.71■■□□□ 1.07
SPEN-205ENST00000487496 PEG3Q9GZU2 1588 aa21.68■■□□□ 1.06
SPEN-205ENST00000487496 BAZ1BQ9UIG0 1483 aaKnown RBP21.65■■□□□ 1.06
SPEN-205ENST00000487496 WIZO95785 1651 aa21.44■■□□□ 1.02
SPEN-205ENST00000487496 NESP48681 1621 aa21.43■■□□□ 1.02
SPEN-205ENST00000487496 ERCC6Q03468 1493 aa21.41■■□□□ 1.02
SPEN-205ENST00000487496 RSF1Q96T23 1441 aaPredicted RBP21.4■■□□□ 1.02
SPEN-205ENST00000487496 LAMC3Q9Y6N6 1575 aa21.31■■□□□ 1
SPEN-205ENST00000487496 CUX2O14529 1486 aa21.26■□□□□ 0.99
SPEN-205ENST00000487496 CADPSQ9ULU8 1353 aa21.24■□□□□ 0.99
SPEN-205ENST00000487496 PDS5BQ9NTI5 1447 aa21.21■□□□□ 0.99
SPEN-205ENST00000487496 TOP2AP11388 1531 aaKnown RBP21.2■□□□□ 0.98
SPEN-205ENST00000487496 KIF21AQ7Z4S6 1674 aa21.11■□□□□ 0.97
SPEN-205ENST00000487496 THOC2Q8NI27 1593 aaKnown RBP21.1■□□□□ 0.97
SPEN-205ENST00000487496 CFTRP13569 1480 aa21.06■□□□□ 0.96
SPEN-205ENST00000487496 CCDC88BA6NC98 1476 aa20.99■□□□□ 0.95
SPEN-205ENST00000487496 MRC2Q9UBG0 1479 aa20.99■□□□□ 0.95
SPEN-205ENST00000487496 FANCD2Q9BXW9 1451 aa20.98■□□□□ 0.95
SPEN-205ENST00000487496 CEP164Q9UPV0 1460 aa20.96■□□□□ 0.95
SPEN-205ENST00000487496 DNAJC5Q9H3Z4 198 aa20.94■□□□□ 0.94
SPEN-205ENST00000487496 WDR62O43379 1518 aa20.92■□□□□ 0.94
SPEN-205ENST00000487496 URB2Q14146 1524 aaKnown RBP20.78■□□□□ 0.92
SPEN-205ENST00000487496 PRDM2Q13029 1718 aa20.78■□□□□ 0.92
SPEN-205ENST00000487496 SUPT5HO00267 1087 aaKnown RBP20.71■□□□□ 0.91
SPEN-205ENST00000487496 TOPBP1Q92547 1522 aa20.61■□□□□ 0.89
SPEN-205ENST00000487496 ABCC8Q09428 1581 aa20.59■□□□□ 0.89
SPEN-205ENST00000487496 DNMBPQ6XZF7 1577 aa20.55■□□□□ 0.88
SPEN-205ENST00000487496 IFT140Q96RY7 1462 aa20.54■□□□□ 0.88
SPEN-205ENST00000487496 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
SPEN-205ENST00000487496 POLA1P09884 1462 aaPredicted RBP20.43■□□□□ 0.86
SPEN-205ENST00000487496 OSCARQ8IYS5 282 aa20.4■□□□□ 0.86
SPEN-205ENST00000487496 TARBP1Q13395 1621 aaKnown RBP20.39■□□□□ 0.86
SPEN-205ENST00000487496 CUX1P39880 1505 aa20.37■□□□□ 0.85
SPEN-205ENST00000487496 SOGA1O94964 1423 aa20.36■□□□□ 0.85
SPEN-205ENST00000487496 RAD54L2Q9Y4B4 1467 aa20.36■□□□□ 0.85
SPEN-205ENST00000487496 AQRO60306 1485 aaKnown RBP eCLIP20.35■□□□□ 0.854e-8■■□□□ 11.9
SPEN-205ENST00000487496 FGD5Q6ZNL6 1462 aa20.35■□□□□ 0.85
SPEN-205ENST00000487496 EIF4G3O43432 1585 aaKnown RBP20.34■□□□□ 0.85
SPEN-205ENST00000487496 TDRD9Q8NDG6 1382 aaKnown RBP20.29■□□□□ 0.84
SPEN-205ENST00000487496 WDR97A6NE52 1622 aa20.19■□□□□ 0.82
SPEN-205ENST00000487496 WRNQ14191 1432 aaPredicted RBP eCLIP20.18■□□□□ 0.82
SPEN-205ENST00000487496 FBLN2P98095 1184 aa20.17■□□□□ 0.82
SPEN-205ENST00000487496 TRIM41Q8WV44 630 aa20.14■□□□□ 0.81
SPEN-205ENST00000487496 ABCA10Q8WWZ4 1543 aa20.13■□□□□ 0.81
SPEN-205ENST00000487496 GRIN2BQ13224 1484 aa20.13■□□□□ 0.81
SPEN-205ENST00000487496 SNAPC4Q5SXM2 1469 aa20.13■□□□□ 0.81
SPEN-205ENST00000487496 TOP2BQ02880 1626 aa20.13■□□□□ 0.81
SPEN-205ENST00000487496 CHD1O14646 1710 aa20.12■□□□□ 0.81
SPEN-205ENST00000487496 SYNJ1O43426 1573 aa20.11■□□□□ 0.81
SPEN-205ENST00000487496 GAPVD1Q14C86 1478 aa20.11■□□□□ 0.81
SPEN-205ENST00000487496 BIVM-ERCC5R4GMW8 1640 aa20.1■□□□□ 0.81
SPEN-205ENST00000487496 MAGI1Q96QZ7 1491 aaPredicted RBP20.09■□□□□ 0.81
SPEN-205ENST00000487496 CHMP7Q8WUX9 453 aaPredicted RBP20.08■□□□□ 0.81
SPEN-205ENST00000487496 ABCA5Q8WWZ7 1642 aa20.05■□□□□ 0.8
SPEN-205ENST00000487496 SYNJ2O15056 1496 aa20.03■□□□□ 0.8
SPEN-205ENST00000487496 RIMBP3CA6NJZ7 1639 aa20.02■□□□□ 0.8
SPEN-205ENST00000487496 RIMBP3BA6NNM3 1639 aa20.02■□□□□ 0.8
SPEN-205ENST00000487496 RIMBP3Q9UFD9 1639 aa20.02■□□□□ 0.8
SPEN-205ENST00000487496 ARHGEF11O15085 1522 aa20.02■□□□□ 0.79
SPEN-205ENST00000487496 PBRM1Q86U86 1689 aa20.01■□□□□ 0.79
SPEN-205ENST00000487496 CLASP1Q7Z460 1538 aa19.93■□□□□ 0.78
SPEN-205ENST00000487496 CYB5RLQ6IPT4 315 aa19.9■□□□□ 0.78
SPEN-205ENST00000487496 ADAMTS12P58397 1594 aa19.87■□□□□ 0.77
SPEN-205ENST00000487496 ERICH3Q5RHP9 1530 aa19.87■□□□□ 0.77
SPEN-205ENST00000487496 GRIN2AQ12879 1464 aa19.86■□□□□ 0.77
SPEN-205ENST00000487496 FHAD1B1AJZ9 1412 aa19.86■□□□□ 0.77
SPEN-205ENST00000487496 ARAP1Q96P48 1450 aa19.85■□□□□ 0.77
SPEN-205ENST00000487496 NUP160Q12769 1436 aa19.8■□□□□ 0.76
SPEN-205ENST00000487496 KIF27Q86VH2 1401 aa19.77■□□□□ 0.76
SPEN-205ENST00000487496 CEP170Q5SW79 1584 aa19.77■□□□□ 0.76
SPEN-205ENST00000487496 IGF1RP08069 1367 aa19.74■□□□□ 0.75
SPEN-205ENST00000487496 ERCC6L2Q5T890 1561 aa19.66■□□□□ 0.74
SPEN-205ENST00000487496 SHROOM2Q13796 1616 aa19.64■□□□□ 0.73
SPEN-205ENST00000487496 JPH4Q96JJ6 628 aa19.63■□□□□ 0.73
SPEN-205ENST00000487496 CUL7Q14999 1698 aa19.62■□□□□ 0.73
SPEN-205ENST00000487496 CARMIL1Q5VZK9 1371 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms