RNA–Protein interactions for RNA: ENST00000480171.7

PKP4-210, Transcript of plakophilin 4, humanhuman

TSL 2

Gene PKP4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-210ENST00000480171 NISCHQ9Y2I1 1504 aa17.62■□□□□ 0.41
PKP4-210ENST00000480171 SHROOM4Q9ULL8 1493 aa15.04■□□□□ -0
PKP4-210ENST00000480171 CCDC180Q9P1Z9 1646 aa14.97□□□□□ -0.01
PKP4-210ENST00000480171 ZCCHC6Q5VYS8 1495 aaKnown RBP14.92□□□□□ -0.02
PKP4-210ENST00000480171 SLC24A1O60721 1099 aa14.85□□□□□ -0.03
PKP4-210ENST00000480171 SUPT5HO00267 1087 aaKnown RBP14.85□□□□□ -0.03
PKP4-210ENST00000480171 DCAF8L2P0C7V8 631 aa14.56□□□□□ -0.08
PKP4-210ENST00000480171 DCAF1Q9Y4B6 1507 aa14.5□□□□□ -0.09
PKP4-210ENST00000480171 CHIC1Q5VXU3 224 aa14.5□□□□□ -0.09
PKP4-210ENST00000480171 MYO15BQ96JP2 1530 aa14.41□□□□□ -0.1
PKP4-210ENST00000480171 HRCP23327 699 aa14.28□□□□□ -0.12
PKP4-210ENST00000480171 PCGF6Q9BYE7 350 aa14.17□□□□□ -0.14
PKP4-210ENST00000480171 ABCC9O60706 1549 aa14.11□□□□□ -0.15
PKP4-210ENST00000480171 LOC105371045A0A1W2PR82 267 aa14.03□□□□□ -0.16
PKP4-210ENST00000480171 SCRIBQ14160 1630 aa13.98□□□□□ -0.17
PKP4-210ENST00000480171 RSF1Q96T23 1441 aaPredicted RBP13.96□□□□□ -0.17
PKP4-210ENST00000480171 TRIM26Q12899 539 aaPredicted RBP13.93□□□□□ -0.18
PKP4-210ENST00000480171 RB1CC1Q8TDY2 1594 aa13.87□□□□□ -0.19
PKP4-210ENST00000480171 PPARGC1BQ86YN6 1023 aaKnown RBP13.87□□□□□ -0.19
PKP4-210ENST00000480171 TRIM41Q8WV44 630 aa13.86□□□□□ -0.19
PKP4-210ENST00000480171 NACADO15069 1562 aa13.81□□□□□ -0.2
PKP4-210ENST00000480171 ZEB1P37275 1124 aaPredicted RBP13.76□□□□□ -0.21
PKP4-210ENST00000480171 FAM9AQ8IZU1 332 aaPredicted RBP13.7□□□□□ -0.22
PKP4-210ENST00000480171 CECR2Q9BXF3 1484 aa13.68□□□□□ -0.22
PKP4-210ENST00000480171 MROH2BQ7Z745 1585 aa13.67□□□□□ -0.22
PKP4-210ENST00000480171 WIZO95785 1651 aa13.6□□□□□ -0.23
PKP4-210ENST00000480171 PRKCSHP14314 528 aaPredicted RBP13.58□□□□□ -0.24
PKP4-210ENST00000480171 BAZ1AQ9NRL2 1556 aaPredicted RBP13.57□□□□□ -0.24
PKP4-210ENST00000480171 DAXXQ9UER7 740 aaPredicted RBP13.55□□□□□ -0.24
PKP4-210ENST00000480171 EHMT2Q96KQ7 1210 aa13.54□□□□□ -0.24
PKP4-210ENST00000480171 PLPPR3Q6T4P5 718 aa13.48□□□□□ -0.25
PKP4-210ENST00000480171 EIF4G1Q04637 1599 aaKnown RBP13.47□□□□□ -0.25
PKP4-210ENST00000480171 TOP2AP11388 1531 aaKnown RBP13.44□□□□□ -0.26
PKP4-210ENST00000480171 SMARCA4P51532 1647 aa13.39□□□□□ -0.27
PKP4-210ENST00000480171 CCDC88BA6NC98 1476 aa13.36□□□□□ -0.27
PKP4-210ENST00000480171 MYT1Q01538 1121 aa13.35□□□□□ -0.27
PKP4-210ENST00000480171 SMARCA2P51531 1590 aa13.34□□□□□ -0.27
PKP4-210ENST00000480171 ABCC8Q09428 1581 aa13.33□□□□□ -0.28
PKP4-210ENST00000480171 CCER1Q8TC90 406 aaPredicted RBP13.32□□□□□ -0.28
PKP4-210ENST00000480171 WRNQ14191 1432 aaPredicted RBP eCLIP13.32□□□□□ -0.28
PKP4-210ENST00000480171 EEA1Q15075 1411 aa13.31□□□□□ -0.28
PKP4-210ENST00000480171 APLP2Q06481 763 aa13.29□□□□□ -0.28
PKP4-210ENST00000480171 UNC13AQ9UPW8 1703 aa13.29□□□□□ -0.28
PKP4-210ENST00000480171 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.28□□□□□ -0.28
PKP4-210ENST00000480171 CEP162Q5TB80 1403 aa13.27□□□□□ -0.28
PKP4-210ENST00000480171 TNIKQ9UKE5 1360 aa13.27□□□□□ -0.28
PKP4-210ENST00000480171 RTN4Q9NQC3 1192 aaKnown RBP13.26□□□□□ -0.29
PKP4-210ENST00000480171 CSRNP3Q8WYN3 585 aa13.23□□□□□ -0.29
PKP4-210ENST00000480171 SOGA1O94964 1423 aa13.23□□□□□ -0.29
PKP4-210ENST00000480171 PELP1Q8IZL8 1130 aaKnown RBP13.22□□□□□ -0.29
PKP4-210ENST00000480171 TTBK1Q5TCY1 1321 aaPredicted RBP13.22□□□□□ -0.29
PKP4-210ENST00000480171 UBTFP17480 764 aaKnown RBP13.2□□□□□ -0.3
PKP4-210ENST00000480171 SCAF1Q9H7N4 1312 aaKnown RBP13.18□□□□□ -0.3
PKP4-210ENST00000480171 PABPN1Q86U42 306 aaKnown RBP eCLIP13.18□□□□□ -0.37e-8■□□□□ 10
PKP4-210ENST00000480171 GOLGA3Q08378 1498 aa13.18□□□□□ -0.3
PKP4-210ENST00000480171 PEG3Q9GZU2 1588 aa13.14□□□□□ -0.31
PKP4-210ENST00000480171 RUSC2Q8N2Y8 1516 aa13.14□□□□□ -0.31
PKP4-210ENST00000480171 DIEXFQ68CQ4 756 aaKnown RBP13.12□□□□□ -0.31
PKP4-210ENST00000480171 BICRAQ9NZM4 1560 aa13.11□□□□□ -0.31
PKP4-210ENST00000480171 CEP164Q9UPV0 1460 aa13.1□□□□□ -0.31
PKP4-210ENST00000480171 ACIN1Q9UKV3 1341 aaKnown RBP13.09□□□□□ -0.31
PKP4-210ENST00000480171 NCBP3Q53F19 620 aaKnown RBP13.09□□□□□ -0.31
PKP4-210ENST00000480171 ERICH6Q7L0X2 663 aa13.09□□□□□ -0.31
PKP4-210ENST00000480171 CENPBP07199 599 aaPredicted RBP13.08□□□□□ -0.32
PKP4-210ENST00000480171 KIF21BO75037 1637 aa13.07□□□□□ -0.32
PKP4-210ENST00000480171 SYNJ1O43426 1573 aa13.04□□□□□ -0.32
PKP4-210ENST00000480171 CLIP1P30622 1438 aa13.02□□□□□ -0.33
PKP4-210ENST00000480171 ATAD2BQ9ULI0 1458 aa13.01□□□□□ -0.33
PKP4-210ENST00000480171 BAZ1BQ9UIG0 1483 aaKnown RBP13.01□□□□□ -0.33
PKP4-210ENST00000480171 ZNF316A6NFI3 1004 aaPredicted RBP13.01□□□□□ -0.33
PKP4-210ENST00000480171 NEUROD1Q13562 356 aa13□□□□□ -0.33
PKP4-210ENST00000480171 VPS8Q8N3P4 1428 aa12.98□□□□□ -0.33
PKP4-210ENST00000480171 HNRNPUL2Q1KMD3 747 aaKnown RBP12.94□□□□□ -0.34
PKP4-210ENST00000480171 RAPGEF2Q9Y4G8 1499 aa12.92□□□□□ -0.34
PKP4-210ENST00000480171 GTF3C3Q9Y5Q9 886 aa12.91□□□□□ -0.34
PKP4-210ENST00000480171 TOP2BQ02880 1626 aa12.91□□□□□ -0.34
PKP4-210ENST00000480171 BIVM-ERCC5R4GMW8 1640 aa12.86□□□□□ -0.35
PKP4-210ENST00000480171 ERICH3Q5RHP9 1530 aa12.85□□□□□ -0.35
PKP4-210ENST00000480171 RANGAP1P46060 587 aaPredicted RBP12.83□□□□□ -0.36
PKP4-210ENST00000480171 CLSPNQ9HAW4 1339 aa12.81□□□□□ -0.36
PKP4-210ENST00000480171 PRXQ9BXM0 1461 aa12.8□□□□□ -0.36
PKP4-210ENST00000480171 MIER1Q8N108 512 aa12.78□□□□□ -0.36
PKP4-210ENST00000480171 HMGXB3Q12766 1538 aa12.78□□□□□ -0.36
PKP4-210ENST00000480171 YTHDC1Q96MU7 727 aaKnown RBP12.77□□□□□ -0.36
PKP4-210ENST00000480171 NCAPD3P42695 1498 aa12.76□□□□□ -0.37
PKP4-210ENST00000480171 TIMELESSQ9UNS1 1208 aa12.76□□□□□ -0.37
PKP4-210ENST00000480171 ARAP1Q96P48 1450 aa12.76□□□□□ -0.37
PKP4-210ENST00000480171 KIF27Q86VH2 1401 aa12.76□□□□□ -0.37
PKP4-210ENST00000480171 CUX1P39880 1505 aa12.72□□□□□ -0.37
PKP4-210ENST00000480171 DHX57Q6P158 1386 aaKnown RBP12.71□□□□□ -0.37
PKP4-210ENST00000480171 RRBP1Q9P2E9 1410 aaKnown RBP12.69□□□□□ -0.38
PKP4-210ENST00000480171 CFTRP13569 1480 aa12.68□□□□□ -0.38
PKP4-210ENST00000480171 KANK4Q5T7N3 995 aaPredicted RBP12.68□□□□□ -0.38
PKP4-210ENST00000480171 CCNB3Q8WWL7 1395 aa12.64□□□□□ -0.39
PKP4-210ENST00000480171 CUX2O14529 1486 aa12.63□□□□□ -0.39
PKP4-210ENST00000480171 ARHGAP35Q9NRY4 1499 aa12.63□□□□□ -0.39
PKP4-210ENST00000480171 PRDM2Q13029 1718 aa12.61□□□□□ -0.39
PKP4-210ENST00000480171 KCNA4P22459 653 aa12.61□□□□□ -0.39
PKP4-210ENST00000480171 EIF5BO60841 1220 aaKnown RBP12.6□□□□□ -0.39
PKP4-210ENST00000480171 MAP3K1Q13233 1512 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms