RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 NISCHQ9Y2I1 1504 aa24.38■■□□□ 1.49
USP42-206ENST00000479544 SUPT5HO00267 1087 aaKnown RBP22.87■■□□□ 1.25
USP42-206ENST00000479544 DCAF8L2P0C7V8 631 aa22.76■■□□□ 1.23
USP42-206ENST00000479544 SHROOM4Q9ULL8 1493 aa22.57■■□□□ 1.2
USP42-206ENST00000479544 ABCC9O60706 1549 aa22.27■■□□□ 1.16
USP42-206ENST00000479544 PCGF6Q9BYE7 350 aa22.23■■□□□ 1.15
USP42-206ENST00000479544 EHMT2Q96KQ7 1210 aa22.03■■□□□ 1.12
USP42-206ENST00000479544 CCDC180Q9P1Z9 1646 aa21.69■■□□□ 1.06
USP42-206ENST00000479544 PPARGC1BQ86YN6 1023 aaKnown RBP21.67■■□□□ 1.06
USP42-206ENST00000479544 HRCP23327 699 aa21.63■■□□□ 1.05
USP42-206ENST00000479544 FAM9AQ8IZU1 332 aaPredicted RBP21.51■■□□□ 1.03
USP42-206ENST00000479544 TTBK1Q5TCY1 1321 aaPredicted RBP21.35■■□□□ 1.01
USP42-206ENST00000479544 LOC105371045A0A1W2PR82 267 aa21.23■□□□□ 0.99
USP42-206ENST00000479544 PELP1Q8IZL8 1130 aaKnown RBP21.18■□□□□ 0.98
USP42-206ENST00000479544 CHIC1Q5VXU3 224 aa21.12■□□□□ 0.97
USP42-206ENST00000479544 RB1CC1Q8TDY2 1594 aa21.06■□□□□ 0.96
USP42-206ENST00000479544 CCER1Q8TC90 406 aaPredicted RBP20.98■□□□□ 0.95
USP42-206ENST00000479544 ZEB1P37275 1124 aaPredicted RBP20.96■□□□□ 0.95
USP42-206ENST00000479544 YTHDC1Q96MU7 727 aaKnown RBP20.96■□□□□ 0.95
USP42-206ENST00000479544 TRIM26Q12899 539 aaPredicted RBP20.95■□□□□ 0.94
USP42-206ENST00000479544 PABPN1Q86U42 306 aaKnown RBP eCLIP20.93■□□□□ 0.94
USP42-206ENST00000479544 CENPBP07199 599 aaPredicted RBP20.91■□□□□ 0.94
USP42-206ENST00000479544 TRIM41Q8WV44 630 aa20.86■□□□□ 0.93
USP42-206ENST00000479544 NACADO15069 1562 aa20.81■□□□□ 0.92
USP42-206ENST00000479544 DNAJC5BQ9UF47 199 aa20.6■□□□□ 0.89
USP42-206ENST00000479544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.58■□□□□ 0.89
USP42-206ENST00000479544 RANGAP1P46060 587 aaPredicted RBP20.58■□□□□ 0.89
USP42-206ENST00000479544 GTF3C3Q9Y5Q9 886 aa20.47■□□□□ 0.87
USP42-206ENST00000479544 MYT1Q01538 1121 aa20.44■□□□□ 0.86
USP42-206ENST00000479544 APLP2Q06481 763 aa20.42■□□□□ 0.86
USP42-206ENST00000479544 DIEXFQ68CQ4 756 aaKnown RBP20.38■□□□□ 0.85
USP42-206ENST00000479544 SCAF1Q9H7N4 1312 aaKnown RBP20.35■□□□□ 0.85
USP42-206ENST00000479544 UBTFP17480 764 aaKnown RBP20.31■□□□□ 0.84
USP42-206ENST00000479544 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
USP42-206ENST00000479544 ACIN1Q9UKV3 1341 aaKnown RBP20.21■□□□□ 0.83
USP42-206ENST00000479544 HNRNPUL2Q1KMD3 747 aaKnown RBP20.18■□□□□ 0.82
USP42-206ENST00000479544 NEUROD1Q13562 356 aa20.14■□□□□ 0.82
USP42-206ENST00000479544 ZCCHC6Q5VYS8 1495 aaKnown RBP20.09■□□□□ 0.81
USP42-206ENST00000479544 CECR2Q9BXF3 1484 aa20.07■□□□□ 0.8
USP42-206ENST00000479544 SCRIBQ14160 1630 aa20.06■□□□□ 0.8
USP42-206ENST00000479544 ERICH6Q7L0X2 663 aa20.06■□□□□ 0.8
USP42-206ENST00000479544 DCAF1Q9Y4B6 1507 aa20■□□□□ 0.79
USP42-206ENST00000479544 ITGAEP38570 1179 aa19.91■□□□□ 0.78
USP42-206ENST00000479544 BCANQ96GW7 911 aa19.91■□□□□ 0.78
USP42-206ENST00000479544 NEFLP07196 543 aa19.9■□□□□ 0.78
USP42-206ENST00000479544 BICRAQ9NZM4 1560 aa19.86■□□□□ 0.77
USP42-206ENST00000479544 ATP1B4Q9UN42 357 aaPredicted RBP19.83■□□□□ 0.76
USP42-206ENST00000479544 ZNF316A6NFI3 1004 aaPredicted RBP19.78■□□□□ 0.76
USP42-206ENST00000479544 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
USP42-206ENST00000479544 UNC13AQ9UPW8 1703 aa19.74■□□□□ 0.75
USP42-206ENST00000479544 EIF4G1Q04637 1599 aaKnown RBP19.73■□□□□ 0.75
USP42-206ENST00000479544 CNGB1Q14028 1251 aaPredicted RBP19.61■□□□□ 0.73
USP42-206ENST00000479544 ERCC6Q03468 1493 aa19.59■□□□□ 0.73
USP42-206ENST00000479544 MIER1Q8N108 512 aa19.58■□□□□ 0.72
USP42-206ENST00000479544 DNAJC5Q9H3Z4 198 aa19.34■□□□□ 0.69
USP42-206ENST00000479544 POLR3GLQ9BT43 218 aa19.34■□□□□ 0.69
USP42-206ENST00000479544 FKBP8Q14318 412 aa19.33■□□□□ 0.68
USP42-206ENST00000479544 SMARCA2P51531 1590 aa19.23■□□□□ 0.67
USP42-206ENST00000479544 BAZ1BQ9UIG0 1483 aaKnown RBP19.21■□□□□ 0.67
USP42-206ENST00000479544 CSRNP3Q8WYN3 585 aa19.2■□□□□ 0.66
USP42-206ENST00000479544 NCAPD3P42695 1498 aa19.2■□□□□ 0.66
USP42-206ENST00000479544 FAM50AQ14320 339 aaKnown RBP19.19■□□□□ 0.66
USP42-206ENST00000479544 TRIM52Q96A61 297 aa19.18■□□□□ 0.66
USP42-206ENST00000479544 RSF1Q96T23 1441 aaPredicted RBP19.16■□□□□ 0.66
USP42-206ENST00000479544 DDX10Q13206 875 aaKnown RBP19.16■□□□□ 0.66
USP42-206ENST00000479544 CUX2O14529 1486 aa19.14■□□□□ 0.65
USP42-206ENST00000479544 ATAD2BQ9ULI0 1458 aa19.13■□□□□ 0.65
USP42-206ENST00000479544 HIRIP3Q9BW71 556 aaPredicted RBP19.12■□□□□ 0.65
USP42-206ENST00000479544 CDK11AQ9UQ88 783 aaPredicted RBP19.11■□□□□ 0.65
USP42-206ENST00000479544 PDS5BQ9NTI5 1447 aa19.1■□□□□ 0.65
USP42-206ENST00000479544 ANP32CO43423 234 aa19.09■□□□□ 0.65
USP42-206ENST00000479544 BAZ1AQ9NRL2 1556 aaPredicted RBP19.09■□□□□ 0.65
USP42-206ENST00000479544 IRX6P78412 446 aaPredicted RBP19.08■□□□□ 0.64
USP42-206ENST00000479544 RTL5Q5HYW3 569 aaPredicted RBP19.07■□□□□ 0.64
USP42-206ENST00000479544 ANP32EQ9BTT0 268 aa19.05■□□□□ 0.64
USP42-206ENST00000479544 SUPT16HQ9Y5B9 1047 aaKnown RBP19.03■□□□□ 0.64
USP42-206ENST00000479544 BCL11AQ9H165 835 aa18.95■□□□□ 0.62
USP42-206ENST00000479544 HMGXB3Q12766 1538 aa18.94■□□□□ 0.62
USP42-206ENST00000479544 NBR1Q14596 966 aa18.94■□□□□ 0.62
USP42-206ENST00000479544 SMARCA4P51532 1647 aa18.94■□□□□ 0.62
USP42-206ENST00000479544 HNRNPUQ00839 825 aaKnown RBP eCLIP18.92■□□□□ 0.62
USP42-206ENST00000479544 DAXXQ9UER7 740 aaPredicted RBP18.92■□□□□ 0.62
USP42-206ENST00000479544 P3H3Q8IVL6 736 aa18.89■□□□□ 0.62
USP42-206ENST00000479544 CLSPNQ9HAW4 1339 aa18.86■□□□□ 0.61
USP42-206ENST00000479544 NPM2Q86SE8 214 aaKnown RBP18.85■□□□□ 0.61
USP42-206ENST00000479544 CADPSQ9ULU8 1353 aa18.85■□□□□ 0.61
USP42-206ENST00000479544 NESP48681 1621 aa18.84■□□□□ 0.61
USP42-206ENST00000479544 SENP3-EIF4A1A0A087X0R7 540 aa18.82■□□□□ 0.6
USP42-206ENST00000479544 CEP162Q5TB80 1403 aa18.81■□□□□ 0.6
USP42-206ENST00000479544 TSHZ2Q9NRE2 1034 aa18.8■□□□□ 0.6
USP42-206ENST00000479544 ZNF326Q5BKZ1 582 aaKnown RBP18.79■□□□□ 0.6
USP42-206ENST00000479544 FAM9BQ8IZU0 186 aa18.79■□□□□ 0.6
USP42-206ENST00000479544 LAMC3Q9Y6N6 1575 aa18.76■□□□□ 0.59
USP42-206ENST00000479544 OSCARQ8IYS5 282 aa18.74■□□□□ 0.59
USP42-206ENST00000479544 MROH2BQ7Z745 1585 aa18.72■□□□□ 0.59
USP42-206ENST00000479544 EIF5BO60841 1220 aaKnown RBP18.71■□□□□ 0.59
USP42-206ENST00000479544 KCNH8Q96L42 1107 aa18.7■□□□□ 0.58
USP42-206ENST00000479544 CEP164Q9UPV0 1460 aa18.69■□□□□ 0.58
USP42-206ENST00000479544 RBM19Q9Y4C8 960 aaKnown RBP18.69■□□□□ 0.58
USP42-206ENST00000479544 MRC2Q9UBG0 1479 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 251.1 ms