RNA–Protein interactions for RNA: ENST00000477639.5

TMED4-204, Transcript of transmembrane p24 trafficking protein 4, humanhuman

TSL 2

Gene TMED4, Length 1,950 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMED4-204ENST00000477639 NISCHQ9Y2I1 1504 aa43.74■■■■■ 4.59
TMED4-204ENST00000477639 CCDC180Q9P1Z9 1646 aa38.19■■■■□ 3.7
TMED4-204ENST00000477639 ABCC9O60706 1549 aa37.5■■■■□ 3.59
TMED4-204ENST00000477639 ZCCHC6Q5VYS8 1495 aaKnown RBP36.96■■■■□ 3.51
TMED4-204ENST00000477639 SHROOM4Q9ULL8 1493 aa36.78■■■■□ 3.48
TMED4-204ENST00000477639 DCAF8L2P0C7V8 631 aa36.12■■■■□ 3.37
TMED4-204ENST00000477639 DCAF1Q9Y4B6 1507 aa36.03■■■■□ 3.36
TMED4-204ENST00000477639 RB1CC1Q8TDY2 1594 aa35.98■■■■□ 3.35
TMED4-204ENST00000477639 SUPT5HO00267 1087 aaKnown RBP35.98■■■■□ 3.35
TMED4-204ENST00000477639 NACADO15069 1562 aa35.91■■■■□ 3.34
TMED4-204ENST00000477639 MYO15BQ96JP2 1530 aa35.62■■■■□ 3.29
TMED4-204ENST00000477639 UNC13AQ9UPW8 1703 aa35.22■■■■□ 3.23
TMED4-204ENST00000477639 PABPN1Q86U42 306 aaKnown RBP eCLIP35.07■■■■□ 3.21
TMED4-204ENST00000477639 CHIC1Q5VXU3 224 aa35.04■■■■□ 3.2
TMED4-204ENST00000477639 SCRIBQ14160 1630 aa34.98■■■■□ 3.19
TMED4-204ENST00000477639 BICRAQ9NZM4 1560 aa34.9■■■■□ 3.18
TMED4-204ENST00000477639 RSF1Q96T23 1441 aaPredicted RBP34.48■■■■□ 3.11
TMED4-204ENST00000477639 DNAJC5BQ9UF47 199 aa34.4■■■■□ 3.1
TMED4-204ENST00000477639 CECR2Q9BXF3 1484 aa34.03■■■■□ 3.04
TMED4-204ENST00000477639 EIF4G1Q04637 1599 aaKnown RBP34■■■■□ 3.03
TMED4-204ENST00000477639 MROH2BQ7Z745 1585 aa33.93■■■■□ 3.02
TMED4-204ENST00000477639 CC2D2AQ9P2K1 1620 aa33.88■■■■□ 3.01
TMED4-204ENST00000477639 LOC105371045A0A1W2PR82 267 aa33.86■■■■□ 3.01
TMED4-204ENST00000477639 WIZO95785 1651 aa33.71■■■□□ 2.99
TMED4-204ENST00000477639 TRIM41Q8WV44 630 aa33.63■■■□□ 2.97
TMED4-204ENST00000477639 BAZ1AQ9NRL2 1556 aaPredicted RBP33.61■■■□□ 2.97
TMED4-204ENST00000477639 PCGF6Q9BYE7 350 aa33.54■■■□□ 2.96
TMED4-204ENST00000477639 HRCP23327 699 aa33.52■■■□□ 2.96
TMED4-204ENST00000477639 SMARCA4P51532 1647 aa33.39■■■□□ 2.94
TMED4-204ENST00000477639 TOP2AP11388 1531 aaKnown RBP33.27■■■□□ 2.92
TMED4-204ENST00000477639 FAM9AQ8IZU1 332 aaPredicted RBP33.2■■■□□ 2.9
TMED4-204ENST00000477639 ATAD2BQ9ULI0 1458 aa33.19■■■□□ 2.9
TMED4-204ENST00000477639 SMARCA2P51531 1590 aa33.13■■■□□ 2.89
TMED4-204ENST00000477639 NCAPD3P42695 1498 aa33.13■■■□□ 2.89
TMED4-204ENST00000477639 TRIM26Q12899 539 aaPredicted RBP33.12■■■□□ 2.89
TMED4-204ENST00000477639 CCDC88BA6NC98 1476 aa33.07■■■□□ 2.89
TMED4-204ENST00000477639 PEG3Q9GZU2 1588 aa32.99■■■□□ 2.87
TMED4-204ENST00000477639 HMGXB3Q12766 1538 aa32.97■■■□□ 2.87
TMED4-204ENST00000477639 BAZ1BQ9UIG0 1483 aaKnown RBP32.95■■■□□ 2.86
TMED4-204ENST00000477639 ABCC8Q09428 1581 aa32.8■■■□□ 2.84
TMED4-204ENST00000477639 EHMT2Q96KQ7 1210 aa32.78■■■□□ 2.84
TMED4-204ENST00000477639 PPARGC1BQ86YN6 1023 aaKnown RBP32.69■■■□□ 2.82
TMED4-204ENST00000477639 SOGA1O94964 1423 aa32.47■■■□□ 2.79
TMED4-204ENST00000477639 NESP48681 1621 aa32.45■■■□□ 2.78
TMED4-204ENST00000477639 EEA1Q15075 1411 aa32.43■■■□□ 2.78
TMED4-204ENST00000477639 WRNQ14191 1432 aaPredicted RBP eCLIP32.36■■■□□ 2.77
TMED4-204ENST00000477639 ZEB1P37275 1124 aaPredicted RBP32.34■■■□□ 2.77
TMED4-204ENST00000477639 RUSC2Q8N2Y8 1516 aa32.32■■■□□ 2.76
TMED4-204ENST00000477639 ERCC6Q03468 1493 aa32.31■■■□□ 2.76
TMED4-204ENST00000477639 CSRNP3Q8WYN3 585 aa32.3■■■□□ 2.76
TMED4-204ENST00000477639 TNIKQ9UKE5 1360 aa32.29■■■□□ 2.76
TMED4-204ENST00000477639 LAMC3Q9Y6N6 1575 aa32.28■■■□□ 2.76
TMED4-204ENST00000477639 CEP162Q5TB80 1403 aa32.23■■■□□ 2.75
TMED4-204ENST00000477639 SYNJ1O43426 1573 aa32.22■■■□□ 2.75
TMED4-204ENST00000477639 CADPSQ9ULU8 1353 aa32.2■■■□□ 2.75
TMED4-204ENST00000477639 GOLGA3Q08378 1498 aa32.11■■■□□ 2.73
TMED4-204ENST00000477639 PDS5BQ9NTI5 1447 aa32.08■■■□□ 2.73
TMED4-204ENST00000477639 KIF21AQ7Z4S6 1674 aa32.05■■■□□ 2.72
TMED4-204ENST00000477639 UBTFP17480 764 aaKnown RBP32.03■■■□□ 2.72
TMED4-204ENST00000477639 CFTRP13569 1480 aa32■■■□□ 2.71
TMED4-204ENST00000477639 KIF21BO75037 1637 aa31.98■■■□□ 2.71
TMED4-204ENST00000477639 CEP164Q9UPV0 1460 aa31.98■■■□□ 2.71
TMED4-204ENST00000477639 TOP2BQ02880 1626 aa31.91■■■□□ 2.7
TMED4-204ENST00000477639 THOC2Q8NI27 1593 aaKnown RBP31.89■■■□□ 2.7
TMED4-204ENST00000477639 CUX2O14529 1486 aa31.86■■■□□ 2.69
TMED4-204ENST00000477639 FANCD2Q9BXW9 1451 aa31.86■■■□□ 2.69
TMED4-204ENST00000477639 BIVM-ERCC5R4GMW8 1640 aa31.83■■■□□ 2.69
TMED4-204ENST00000477639 PRDM2Q13029 1718 aa31.78■■■□□ 2.68
TMED4-204ENST00000477639 MRC2Q9UBG0 1479 aa31.75■■■□□ 2.67
TMED4-204ENST00000477639 RAPGEF2Q9Y4G8 1499 aa31.71■■■□□ 2.67
TMED4-204ENST00000477639 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.71■■■□□ 2.67
TMED4-204ENST00000477639 CLIP1P30622 1438 aa31.69■■■□□ 2.66
TMED4-204ENST00000477639 TTBK1Q5TCY1 1321 aaPredicted RBP31.68■■■□□ 2.66
TMED4-204ENST00000477639 CCER1Q8TC90 406 aaPredicted RBP31.64■■■□□ 2.66
TMED4-204ENST00000477639 WDR62O43379 1518 aa31.63■■■□□ 2.65
TMED4-204ENST00000477639 CUX1P39880 1505 aa31.62■■■□□ 2.65
TMED4-204ENST00000477639 VPS8Q8N3P4 1428 aa31.57■■■□□ 2.64
TMED4-204ENST00000477639 URB2Q14146 1524 aaKnown RBP31.54■■■□□ 2.64
TMED4-204ENST00000477639 PRXQ9BXM0 1461 aa31.54■■■□□ 2.64
TMED4-204ENST00000477639 ERICH3Q5RHP9 1530 aa31.53■■■□□ 2.64
TMED4-204ENST00000477639 KIF27Q86VH2 1401 aa31.4■■■□□ 2.62
TMED4-204ENST00000477639 TOPBP1Q92547 1522 aa31.35■■■□□ 2.61
TMED4-204ENST00000477639 DNMBPQ6XZF7 1577 aa31.29■■■□□ 2.6
TMED4-204ENST00000477639 RANGAP1P46060 587 aaPredicted RBP31.28■■■□□ 2.6
TMED4-204ENST00000477639 APLP2Q06481 763 aa31.28■■■□□ 2.6
TMED4-204ENST00000477639 ARAP1Q96P48 1450 aa31.26■■■□□ 2.59
TMED4-204ENST00000477639 HNRNPUL2Q1KMD3 747 aaKnown RBP31.14■■■□□ 2.57
TMED4-204ENST00000477639 IFT140Q96RY7 1462 aa31.12■■■□□ 2.57
TMED4-204ENST00000477639 IGF1RP08069 1367 aa31.1■■■□□ 2.57
TMED4-204ENST00000477639 POLA1P09884 1462 aaPredicted RBP31.09■■■□□ 2.57
TMED4-204ENST00000477639 FGD5Q6ZNL6 1462 aa31.06■■■□□ 2.56
TMED4-204ENST00000477639 ZNF608Q9ULD9 1512 aaPredicted RBP31.05■■■□□ 2.56
TMED4-204ENST00000477639 ARHGAP35Q9NRY4 1499 aa31.03■■■□□ 2.56
TMED4-204ENST00000477639 RAD54L2Q9Y4B4 1467 aa31■■■□□ 2.55
TMED4-204ENST00000477639 TARBP1Q13395 1621 aaKnown RBP30.99■■■□□ 2.55
TMED4-204ENST00000477639 KANK4Q5T7N3 995 aaPredicted RBP30.96■■■□□ 2.55
TMED4-204ENST00000477639 CARMIL1Q5VZK9 1371 aa30.92■■■□□ 2.54
TMED4-204ENST00000477639 DNAJC5Q9H3Z4 198 aa30.92■■■□□ 2.54
TMED4-204ENST00000477639 EIF4G3O43432 1585 aaKnown RBP30.91■■■□□ 2.54
TMED4-204ENST00000477639 DIEXFQ68CQ4 756 aaKnown RBP30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms