RNA–Protein interactions for RNA: ENST00000477264.1

CLSTN1-205, Transcript of calsyntenin 1, humanhuman

TSL 2

Gene CLSTN1, Length 2,169 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-205ENST00000477264 NISCHQ9Y2I1 1504 aa31.7■■■□□ 2.67
CLSTN1-205ENST00000477264 CCDC180Q9P1Z9 1646 aa27.71■■■□□ 2.03
CLSTN1-205ENST00000477264 ZCCHC6Q5VYS8 1495 aaKnown RBP26.6■■□□□ 1.85
CLSTN1-205ENST00000477264 DCAF8L2P0C7V8 631 aa26.3■■□□□ 1.8
CLSTN1-205ENST00000477264 ABCC9O60706 1549 aa26.26■■□□□ 1.79
CLSTN1-205ENST00000477264 DCAF1Q9Y4B6 1507 aa26.21■■□□□ 1.79
CLSTN1-205ENST00000477264 MYO15BQ96JP2 1530 aa25.92■■□□□ 1.74
CLSTN1-205ENST00000477264 SHROOM4Q9ULL8 1493 aa25.84■■□□□ 1.73
CLSTN1-205ENST00000477264 NACADO15069 1562 aa25.82■■□□□ 1.72
CLSTN1-205ENST00000477264 RB1CC1Q8TDY2 1594 aa25.64■■□□□ 1.69
CLSTN1-205ENST00000477264 HRCP23327 699 aa25.62■■□□□ 1.69
CLSTN1-205ENST00000477264 SCRIBQ14160 1630 aa25.47■■□□□ 1.67
CLSTN1-205ENST00000477264 UNC13AQ9UPW8 1703 aa25.1■■□□□ 1.61
CLSTN1-205ENST00000477264 SUPT5HO00267 1087 aaKnown RBP25.1■■□□□ 1.61
CLSTN1-205ENST00000477264 CHIC1Q5VXU3 224 aa24.92■■□□□ 1.58
CLSTN1-205ENST00000477264 PELP1Q8IZL8 1130 aaKnown RBP24.92■■□□□ 1.58
CLSTN1-205ENST00000477264 PCGF6Q9BYE7 350 aa24.86■■□□□ 1.57
CLSTN1-205ENST00000477264 BICRAQ9NZM4 1560 aa24.8■■□□□ 1.56
CLSTN1-205ENST00000477264 PABPN1Q86U42 306 aaKnown RBP eCLIP24.75■■□□□ 1.55
CLSTN1-205ENST00000477264 PPARGC1BQ86YN6 1023 aaKnown RBP24.68■■□□□ 1.54
CLSTN1-205ENST00000477264 CECR2Q9BXF3 1484 aa24.62■■□□□ 1.53
CLSTN1-205ENST00000477264 RSF1Q96T23 1441 aaPredicted RBP24.55■■□□□ 1.52
CLSTN1-205ENST00000477264 BAZ1AQ9NRL2 1556 aaPredicted RBP24.52■■□□□ 1.52
CLSTN1-205ENST00000477264 MROH2BQ7Z745 1585 aa24.48■■□□□ 1.51
CLSTN1-205ENST00000477264 SMARCA4P51532 1647 aa24.4■■□□□ 1.5
CLSTN1-205ENST00000477264 TRIM26Q12899 539 aaPredicted RBP24.4■■□□□ 1.5
CLSTN1-205ENST00000477264 ZEB1P37275 1124 aaPredicted RBP24.39■■□□□ 1.49
CLSTN1-205ENST00000477264 WIZO95785 1651 aa24.3■■□□□ 1.48
CLSTN1-205ENST00000477264 EIF4G1Q04637 1599 aaKnown RBP24.1■■□□□ 1.45
CLSTN1-205ENST00000477264 PEG3Q9GZU2 1588 aa24.08■■□□□ 1.45
CLSTN1-205ENST00000477264 MYT1Q01538 1121 aa24.06■■□□□ 1.44
CLSTN1-205ENST00000477264 LOC105371045A0A1W2PR82 267 aa24.04■■□□□ 1.44
CLSTN1-205ENST00000477264 TOP2AP11388 1531 aaKnown RBP24.04■■□□□ 1.44
CLSTN1-205ENST00000477264 SMARCA2P51531 1590 aa24.03■■□□□ 1.44
CLSTN1-205ENST00000477264 SCAF1Q9H7N4 1312 aaKnown RBP24.01■■□□□ 1.43
CLSTN1-205ENST00000477264 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
CLSTN1-205ENST00000477264 BAZ1BQ9UIG0 1483 aaKnown RBP23.9■■□□□ 1.42
CLSTN1-205ENST00000477264 NCAPD3P42695 1498 aa23.81■■□□□ 1.4
CLSTN1-205ENST00000477264 CCDC88BA6NC98 1476 aa23.79■■□□□ 1.4
CLSTN1-205ENST00000477264 HMGXB3Q12766 1538 aa23.78■■□□□ 1.4
CLSTN1-205ENST00000477264 CC2D2AQ9P2K1 1620 aa23.77■■□□□ 1.4
CLSTN1-205ENST00000477264 ACIN1Q9UKV3 1341 aaKnown RBP23.61■■□□□ 1.37
CLSTN1-205ENST00000477264 CENPBP07199 599 aaPredicted RBP23.45■■□□□ 1.35
CLSTN1-205ENST00000477264 TRIM41Q8WV44 630 aa23.42■■□□□ 1.34
CLSTN1-205ENST00000477264 NEUROD1Q13562 356 aa23.38■■□□□ 1.33
CLSTN1-205ENST00000477264 ABCC8Q09428 1581 aa23.28■■□□□ 1.32
CLSTN1-205ENST00000477264 CFTRP13569 1480 aa23.26■■□□□ 1.31
CLSTN1-205ENST00000477264 GTF3C3Q9Y5Q9 886 aa23.25■■□□□ 1.31
CLSTN1-205ENST00000477264 CADPSQ9ULU8 1353 aa23.21■■□□□ 1.31
CLSTN1-205ENST00000477264 DIEXFQ68CQ4 756 aaKnown RBP23.2■■□□□ 1.3
CLSTN1-205ENST00000477264 PRDM2Q13029 1718 aa23.19■■□□□ 1.3
CLSTN1-205ENST00000477264 DNAJC5BQ9UF47 199 aa23.17■■□□□ 1.3
CLSTN1-205ENST00000477264 CCER1Q8TC90 406 aaPredicted RBP23.16■■□□□ 1.3
CLSTN1-205ENST00000477264 WRNQ14191 1432 aaPredicted RBP eCLIP23.15■■□□□ 1.3
CLSTN1-205ENST00000477264 FAM9AQ8IZU1 332 aaPredicted RBP23.1■■□□□ 1.29
CLSTN1-205ENST00000477264 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.06■■□□□ 1.28
CLSTN1-205ENST00000477264 LAMC3Q9Y6N6 1575 aa23.05■■□□□ 1.28
CLSTN1-205ENST00000477264 SYNJ1O43426 1573 aa23.03■■□□□ 1.28
CLSTN1-205ENST00000477264 NESP48681 1621 aa23.01■■□□□ 1.27
CLSTN1-205ENST00000477264 TOP2BQ02880 1626 aa22.97■■□□□ 1.27
CLSTN1-205ENST00000477264 FANCD2Q9BXW9 1451 aa22.96■■□□□ 1.27
CLSTN1-205ENST00000477264 BIVM-ERCC5R4GMW8 1640 aa22.94■■□□□ 1.26
CLSTN1-205ENST00000477264 CUX1P39880 1505 aa22.89■■□□□ 1.26
CLSTN1-205ENST00000477264 PDS5BQ9NTI5 1447 aa22.88■■□□□ 1.25
CLSTN1-205ENST00000477264 ZNF316A6NFI3 1004 aaPredicted RBP22.86■■□□□ 1.25
CLSTN1-205ENST00000477264 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
CLSTN1-205ENST00000477264 SOGA1O94964 1423 aa22.81■■□□□ 1.24
CLSTN1-205ENST00000477264 EEA1Q15075 1411 aa22.79■■□□□ 1.24
CLSTN1-205ENST00000477264 KIF21AQ7Z4S6 1674 aa22.77■■□□□ 1.24
CLSTN1-205ENST00000477264 CLSPNQ9HAW4 1339 aa22.74■■□□□ 1.23
CLSTN1-205ENST00000477264 DNMBPQ6XZF7 1577 aa22.74■■□□□ 1.23
CLSTN1-205ENST00000477264 EHMT2Q96KQ7 1210 aa22.73■■□□□ 1.23
CLSTN1-205ENST00000477264 RUSC2Q8N2Y8 1516 aa22.71■■□□□ 1.23
CLSTN1-205ENST00000477264 CEP162Q5TB80 1403 aa22.71■■□□□ 1.23
CLSTN1-205ENST00000477264 TOPBP1Q92547 1522 aa22.69■■□□□ 1.22
CLSTN1-205ENST00000477264 FGD5Q6ZNL6 1462 aa22.68■■□□□ 1.22
CLSTN1-205ENST00000477264 CSRNP3Q8WYN3 585 aa22.67■■□□□ 1.22
CLSTN1-205ENST00000477264 TNIKQ9UKE5 1360 aa22.65■■□□□ 1.22
CLSTN1-205ENST00000477264 URB2Q14146 1524 aaKnown RBP22.65■■□□□ 1.22
CLSTN1-205ENST00000477264 TTBK1Q5TCY1 1321 aaPredicted RBP22.61■■□□□ 1.21
CLSTN1-205ENST00000477264 KIF27Q86VH2 1401 aa22.59■■□□□ 1.21
CLSTN1-205ENST00000477264 POLA1P09884 1462 aaPredicted RBP22.57■■□□□ 1.2
CLSTN1-205ENST00000477264 ERCC6Q03468 1493 aa22.57■■□□□ 1.2
CLSTN1-205ENST00000477264 MRC2Q9UBG0 1479 aa22.57■■□□□ 1.2
CLSTN1-205ENST00000477264 YTHDC1Q96MU7 727 aaKnown RBP22.53■■□□□ 1.2
CLSTN1-205ENST00000477264 CUX2O14529 1486 aa22.53■■□□□ 1.2
CLSTN1-205ENST00000477264 MIER1Q8N108 512 aa22.5■■□□□ 1.19
CLSTN1-205ENST00000477264 RAD54L2Q9Y4B4 1467 aa22.49■■□□□ 1.19
CLSTN1-205ENST00000477264 KIF21BO75037 1637 aa22.48■■□□□ 1.19
CLSTN1-205ENST00000477264 GOLGA3Q08378 1498 aa22.47■■□□□ 1.19
CLSTN1-205ENST00000477264 ABCA10Q8WWZ4 1543 aa22.47■■□□□ 1.19
CLSTN1-205ENST00000477264 WDR62O43379 1518 aa22.44■■□□□ 1.18
CLSTN1-205ENST00000477264 UBTFP17480 764 aaKnown RBP22.42■■□□□ 1.18
CLSTN1-205ENST00000477264 WDR97A6NE52 1622 aa22.4■■□□□ 1.18
CLSTN1-205ENST00000477264 THOC2Q8NI27 1593 aaKnown RBP22.38■■□□□ 1.17
CLSTN1-205ENST00000477264 PRXQ9BXM0 1461 aa22.37■■□□□ 1.17
CLSTN1-205ENST00000477264 RAPGEF2Q9Y4G8 1499 aa22.36■■□□□ 1.17
CLSTN1-205ENST00000477264 ERICH3Q5RHP9 1530 aa22.35■■□□□ 1.17
CLSTN1-205ENST00000477264 TARBP1Q13395 1621 aaKnown RBP22.35■■□□□ 1.17
CLSTN1-205ENST00000477264 IGF1RP08069 1367 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms