RNA–Protein interactions for RNA: ENST00000474814.1

SNHG12-206, Transcript of small nucleolar RNA host gene 12, human

TSL 2

Gene SNHG12, Length 1,903 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG12-206	ENST00000474814	NISCH	Q9Y2I1	1504 aa		40.07	■■■■■ 4.01
SNHG12-206	ENST00000474814	CCDC180	Q9P1Z9	1646 aa		34.9	■■■■□ 3.18
SNHG12-206	ENST00000474814	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.68	■■■□□ 2.98
SNHG12-206	ENST00000474814	DCAF1	Q9Y4B6	1507 aa		33.11	■■■□□ 2.89
SNHG12-206	ENST00000474814	DCAF8L2	P0C7V8	631 aa		33.07	■■■□□ 2.88
SNHG12-206	ENST00000474814	ABCC9	O60706	1549 aa		33.01	■■■□□ 2.87
SNHG12-206	ENST00000474814	SHROOM4	Q9ULL8	1493 aa		32.74	■■■□□ 2.83
SNHG12-206	ENST00000474814	MYO15B	Q96JP2	1530 aa		32.69	■■■□□ 2.82
SNHG12-206	ENST00000474814	NACAD	O15069	1562 aa		32.5	■■■□□ 2.79
SNHG12-206	ENST00000474814	RB1CC1	Q8TDY2	1594 aa		32.21	■■■□□ 2.75
SNHG12-206	ENST00000474814	SCRIB	Q14160	1630 aa		32.15	■■■□□ 2.74
SNHG12-206	ENST00000474814	UNC13A	Q9UPW8	1703 aa		31.61	■■■□□ 2.65
SNHG12-206	ENST00000474814	SUPT5H	O00267	1087 aa	Known RBP	31.49	■■■□□ 2.63
SNHG12-206	ENST00000474814	BICRA	Q9NZM4	1560 aa		31.29	■■■□□ 2.6
SNHG12-206	ENST00000474814	CECR2	Q9BXF3	1484 aa		31.16	■■■□□ 2.58
SNHG12-206	ENST00000474814	PABPN1	Q86U42	306 aa	Known RBP eCLIP	31.15	■■■□□ 2.58
SNHG12-206	ENST00000474814	RSF1	Q96T23	1441 aa	Predicted RBP	31.11	■■■□□ 2.57
SNHG12-206	ENST00000474814	MROH2B	Q7Z745	1585 aa		30.98	■■■□□ 2.55
SNHG12-206	ENST00000474814	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.93	■■■□□ 2.54
SNHG12-206	ENST00000474814	SMARCA4	P51532	1647 aa		30.8	■■■□□ 2.52
SNHG12-206	ENST00000474814	WIZ	O95785	1651 aa		30.73	■■■□□ 2.51
SNHG12-206	ENST00000474814	PEG3	Q9GZU2	1588 aa		30.41	■■■□□ 2.46
SNHG12-206	ENST00000474814	TOP2A	P11388	1531 aa	Known RBP	30.4	■■■□□ 2.46
SNHG12-206	ENST00000474814	EIF4G1	Q04637	1599 aa	Known RBP	30.32	■■■□□ 2.44
SNHG12-206	ENST00000474814	ATAD2B	Q9ULI0	1458 aa		30.29	■■■□□ 2.44
SNHG12-206	ENST00000474814	SMARCA2	P51531	1590 aa		30.25	■■■□□ 2.43
SNHG12-206	ENST00000474814	CHIC1	Q5VXU3	224 aa		30.17	■■■□□ 2.42
SNHG12-206	ENST00000474814	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.11	■■■□□ 2.41
SNHG12-206	ENST00000474814	CCDC88B	A6NC98	1476 aa		30.09	■■■□□ 2.41
SNHG12-206	ENST00000474814	NCAPD3	P42695	1498 aa		30.01	■■■□□ 2.39
SNHG12-206	ENST00000474814	HMGXB3	Q12766	1538 aa		29.97	■■■□□ 2.39
SNHG12-206	ENST00000474814	CC2D2A	Q9P2K1	1620 aa		29.87	■■■□□ 2.37
SNHG12-206	ENST00000474814	TRIM41	Q8WV44	630 aa		29.59	■■■□□ 2.33
SNHG12-206	ENST00000474814	ABCC8	Q09428	1581 aa		29.49	■■■□□ 2.31
SNHG12-206	ENST00000474814	CFTR	P13569	1480 aa		29.36	■■■□□ 2.29
SNHG12-206	ENST00000474814	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.27	■■■□□ 2.28
SNHG12-206	ENST00000474814	CADPS	Q9ULU8	1353 aa		29.24	■■■□□ 2.27
SNHG12-206	ENST00000474814	PRDM2	Q13029	1718 aa		29.2	■■■□□ 2.26
SNHG12-206	ENST00000474814	SYNJ1	O43426	1573 aa		29.17	■■■□□ 2.26
SNHG12-206	ENST00000474814	DNAJC5B	Q9UF47	199 aa		29.16	■■■□□ 2.26
SNHG12-206	ENST00000474814	FAM9A	Q8IZU1	332 aa	Predicted RBP	29.08	■■■□□ 2.25
SNHG12-206	ENST00000474814	LOC105371045	A0A1W2PR82	267 aa		29.03	■■■□□ 2.24
SNHG12-206	ENST00000474814	TOP2B	Q02880	1626 aa		29.03	■■■□□ 2.24
SNHG12-206	ENST00000474814	NES	P48681	1621 aa		29.01	■■■□□ 2.23
SNHG12-206	ENST00000474814	BIVM-ERCC5	R4GMW8	1640 aa		29	■■■□□ 2.23
SNHG12-206	ENST00000474814	LAMC3	Q9Y6N6	1575 aa		28.97	■■■□□ 2.23
SNHG12-206	ENST00000474814	CUX1	P39880	1505 aa		28.97	■■■□□ 2.23
SNHG12-206	ENST00000474814	SOGA1	O94964	1423 aa		28.94	■■■□□ 2.22
SNHG12-206	ENST00000474814	FANCD2	Q9BXW9	1451 aa		28.93	■■■□□ 2.22
SNHG12-206	ENST00000474814	RUSC2	Q8N2Y8	1516 aa		28.84	■■■□□ 2.21
SNHG12-206	ENST00000474814	EEA1	Q15075	1411 aa		28.84	■■■□□ 2.21
SNHG12-206	ENST00000474814	PDS5B	Q9NTI5	1447 aa		28.74	■■■□□ 2.19
SNHG12-206	ENST00000474814	CEP164	Q9UPV0	1460 aa		28.74	■■■□□ 2.19
SNHG12-206	ENST00000474814	CSRNP3	Q8WYN3	585 aa		28.69	■■■□□ 2.18
SNHG12-206	ENST00000474814	EHMT2	Q96KQ7	1210 aa		28.69	■■■□□ 2.18
SNHG12-206	ENST00000474814	DNMBP	Q6XZF7	1577 aa		28.67	■■■□□ 2.18
SNHG12-206	ENST00000474814	KIF21A	Q7Z4S6	1674 aa		28.65	■■■□□ 2.18
SNHG12-206	ENST00000474814	FGD5	Q6ZNL6	1462 aa		28.63	■■■□□ 2.17
SNHG12-206	ENST00000474814	TOPBP1	Q92547	1522 aa		28.62	■■■□□ 2.17
SNHG12-206	ENST00000474814	URB2	Q14146	1524 aa	Known RBP	28.59	■■■□□ 2.17
SNHG12-206	ENST00000474814	HRC	P23327	699 aa		28.58	■■■□□ 2.17
SNHG12-206	ENST00000474814	KIF27	Q86VH2	1401 aa		28.52	■■■□□ 2.16
SNHG12-206	ENST00000474814	PCGF6	Q9BYE7	350 aa		28.5	■■■□□ 2.15
SNHG12-206	ENST00000474814	POLA1	P09884	1462 aa	Predicted RBP	28.49	■■■□□ 2.15
SNHG12-206	ENST00000474814	KIF21B	O75037	1637 aa		28.49	■■■□□ 2.15
SNHG12-206	ENST00000474814	GOLGA3	Q08378	1498 aa		28.47	■■■□□ 2.15
SNHG12-206	ENST00000474814	CUX2	O14529	1486 aa		28.45	■■■□□ 2.14
SNHG12-206	ENST00000474814	RAD54L2	Q9Y4B4	1467 aa		28.41	■■■□□ 2.14
SNHG12-206	ENST00000474814	MRC2	Q9UBG0	1479 aa		28.39	■■■□□ 2.14
SNHG12-206	ENST00000474814	TNIK	Q9UKE5	1360 aa		28.38	■■■□□ 2.13
SNHG12-206	ENST00000474814	ABCA10	Q8WWZ4	1543 aa		28.37	■■■□□ 2.13
SNHG12-206	ENST00000474814	PRX	Q9BXM0	1461 aa		28.35	■■■□□ 2.13
SNHG12-206	ENST00000474814	RAPGEF2	Q9Y4G8	1499 aa		28.35	■■■□□ 2.13
SNHG12-206	ENST00000474814	UBTF	P17480	764 aa	Known RBP	28.33	■■■□□ 2.13
SNHG12-206	ENST00000474814	ERICH3	Q5RHP9	1530 aa		28.29	■■■□□ 2.12
SNHG12-206	ENST00000474814	WDR97	A6NE52	1622 aa		28.29	■■■□□ 2.12
SNHG12-206	ENST00000474814	ERCC6	Q03468	1493 aa		28.28	■■■□□ 2.12
SNHG12-206	ENST00000474814	IGF1R	P08069	1367 aa		28.28	■■■□□ 2.12
SNHG12-206	ENST00000474814	CEP162	Q5TB80	1403 aa		28.25	■■■□□ 2.11
SNHG12-206	ENST00000474814	WDR62	O43379	1518 aa		28.25	■■■□□ 2.11
SNHG12-206	ENST00000474814	TARBP1	Q13395	1621 aa	Known RBP	28.2	■■■□□ 2.11
SNHG12-206	ENST00000474814	THOC2	Q8NI27	1593 aa	Known RBP	28.17	■■■□□ 2.1
SNHG12-206	ENST00000474814	ABCA5	Q8WWZ7	1642 aa		28.15	■■■□□ 2.1
SNHG12-206	ENST00000474814	TRIM26	Q12899	539 aa	Predicted RBP	28.12	■■■□□ 2.09
SNHG12-206	ENST00000474814	CARMIL1	Q5VZK9	1371 aa		28.12	■■■□□ 2.09
SNHG12-206	ENST00000474814	TDRD9	Q8NDG6	1382 aa	Known RBP	28.12	■■■□□ 2.09
SNHG12-206	ENST00000474814	GAPVD1	Q14C86	1478 aa		28.08	■■■□□ 2.09
SNHG12-206	ENST00000474814	IFT140	Q96RY7	1462 aa		28.04	■■■□□ 2.08
SNHG12-206	ENST00000474814	CUL7	Q14999	1698 aa		28.04	■■■□□ 2.08
SNHG12-206	ENST00000474814	CLIP1	P30622	1438 aa		28.02	■■■□□ 2.08
SNHG12-206	ENST00000474814	AQR	O60306	1485 aa	Known RBP eCLIP	27.95	■■■□□ 2.06	3e-10	■■■■■ 36.3
SNHG12-206	ENST00000474814	PBRM1	Q86U86	1689 aa		27.93	■■■□□ 2.06
SNHG12-206	ENST00000474814	ZNF608	Q9ULD9	1512 aa	Predicted RBP	27.92	■■■□□ 2.06
SNHG12-206	ENST00000474814	RANGAP1	P46060	587 aa	Predicted RBP	27.89	■■■□□ 2.06
SNHG12-206	ENST00000474814	GRIN2B	Q13224	1484 aa		27.85	■■■□□ 2.05
SNHG12-206	ENST00000474814	PPARGC1B	Q86YN6	1023 aa	Known RBP	27.82	■■■□□ 2.04
SNHG12-206	ENST00000474814	EIF4G3	O43432	1585 aa	Known RBP	27.82	■■■□□ 2.04
SNHG12-206	ENST00000474814	ADAMTS12	P58397	1594 aa		27.78	■■■□□ 2.04
SNHG12-206	ENST00000474814	VPS8	Q8N3P4	1428 aa		27.78	■■■□□ 2.04
SNHG12-206	ENST00000474814	ARAP1	Q96P48	1450 aa		27.77	■■■□□ 2.04

Retrieved 100 of 20,778 RNA–protein pairs in 78 ms