RNA–Protein interactions for RNA: ENST00000474568.5

ITGB1-210, Transcript of integrin subunit beta 1, humanhuman

TSL 5

Gene ITGB1, Length 788 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-210ENST00000474568 NISCHQ9Y2I1 1504 aa39.02■■■■□ 3.84
ITGB1-210ENST00000474568 CCDC180Q9P1Z9 1646 aa34.64■■■■□ 3.14
ITGB1-210ENST00000474568 ABCC9O60706 1549 aa34.3■■■■□ 3.08
ITGB1-210ENST00000474568 DCAF8L2P0C7V8 631 aa32.89■■■□□ 2.86
ITGB1-210ENST00000474568 RB1CC1Q8TDY2 1594 aa32.77■■■□□ 2.84
ITGB1-210ENST00000474568 NACADO15069 1562 aa32.66■■■□□ 2.82
ITGB1-210ENST00000474568 ZCCHC6Q5VYS8 1495 aaKnown RBP32.47■■■□□ 2.79
ITGB1-210ENST00000474568 MYO15BQ96JP2 1530 aa32.35■■■□□ 2.77
ITGB1-210ENST00000474568 DCAF1Q9Y4B6 1507 aa32.17■■■□□ 2.74
ITGB1-210ENST00000474568 PABPN1Q86U42 306 aaKnown RBP eCLIP32.09■■■□□ 2.73
ITGB1-210ENST00000474568 UNC13AQ9UPW8 1703 aa31.97■■■□□ 2.71
ITGB1-210ENST00000474568 BICRAQ9NZM4 1560 aa31.8■■■□□ 2.68
ITGB1-210ENST00000474568 SCRIBQ14160 1630 aa31.78■■■□□ 2.68
ITGB1-210ENST00000474568 DNAJC5BQ9UF47 199 aa31.66■■■□□ 2.66
ITGB1-210ENST00000474568 SHROOM4Q9ULL8 1493 aa31.34■■■□□ 2.61
ITGB1-210ENST00000474568 EIF4G1Q04637 1599 aaKnown RBP30.99■■■□□ 2.55
ITGB1-210ENST00000474568 CC2D2AQ9P2K1 1620 aa30.91■■■□□ 2.54
ITGB1-210ENST00000474568 CECR2Q9BXF3 1484 aa30.78■■■□□ 2.52
ITGB1-210ENST00000474568 SMARCA4P51532 1647 aa30.29■■■□□ 2.44
ITGB1-210ENST00000474568 BAZ1AQ9NRL2 1556 aaPredicted RBP30.23■■■□□ 2.43
ITGB1-210ENST00000474568 ATAD2BQ9ULI0 1458 aa30.21■■■□□ 2.43
ITGB1-210ENST00000474568 NCAPD3P42695 1498 aa30.18■■■□□ 2.42
ITGB1-210ENST00000474568 MROH2BQ7Z745 1585 aa30.12■■■□□ 2.41
ITGB1-210ENST00000474568 SMARCA2P51531 1590 aa30.11■■■□□ 2.41
ITGB1-210ENST00000474568 HMGXB3Q12766 1538 aa29.98■■■□□ 2.39
ITGB1-210ENST00000474568 BAZ1BQ9UIG0 1483 aaKnown RBP29.97■■■□□ 2.39
ITGB1-210ENST00000474568 PEG3Q9GZU2 1588 aa29.94■■■□□ 2.38
ITGB1-210ENST00000474568 WIZO95785 1651 aa29.76■■■□□ 2.36
ITGB1-210ENST00000474568 RSF1Q96T23 1441 aaPredicted RBP29.71■■■□□ 2.35
ITGB1-210ENST00000474568 NESP48681 1621 aa29.62■■■□□ 2.33
ITGB1-210ENST00000474568 ERCC6Q03468 1493 aa29.55■■■□□ 2.32
ITGB1-210ENST00000474568 TOP2AP11388 1531 aaKnown RBP29.41■■■□□ 2.3
ITGB1-210ENST00000474568 LAMC3Q9Y6N6 1575 aa29.38■■■□□ 2.29
ITGB1-210ENST00000474568 CADPSQ9ULU8 1353 aa29.34■■■□□ 2.29
ITGB1-210ENST00000474568 PDS5BQ9NTI5 1447 aa29.25■■■□□ 2.27
ITGB1-210ENST00000474568 CUX2O14529 1486 aa29.19■■■□□ 2.26
ITGB1-210ENST00000474568 KIF21AQ7Z4S6 1674 aa29.15■■■□□ 2.26
ITGB1-210ENST00000474568 CCDC88BA6NC98 1476 aa29.12■■■□□ 2.25
ITGB1-210ENST00000474568 CFTRP13569 1480 aa29.1■■■□□ 2.25
ITGB1-210ENST00000474568 THOC2Q8NI27 1593 aaKnown RBP29.09■■■□□ 2.25
ITGB1-210ENST00000474568 FANCD2Q9BXW9 1451 aa29.02■■■□□ 2.24
ITGB1-210ENST00000474568 SUPT5HO00267 1087 aaKnown RBP29■■■□□ 2.23
ITGB1-210ENST00000474568 CEP164Q9UPV0 1460 aa28.98■■■□□ 2.23
ITGB1-210ENST00000474568 MRC2Q9UBG0 1479 aa28.97■■■□□ 2.23
ITGB1-210ENST00000474568 WDR62O43379 1518 aa28.84■■■□□ 2.21
ITGB1-210ENST00000474568 URB2Q14146 1524 aaKnown RBP28.74■■■□□ 2.19
ITGB1-210ENST00000474568 PRDM2Q13029 1718 aa28.72■■■□□ 2.19
ITGB1-210ENST00000474568 DNAJC5Q9H3Z4 198 aa28.57■■■□□ 2.16
ITGB1-210ENST00000474568 TOPBP1Q92547 1522 aa28.52■■■□□ 2.16
ITGB1-210ENST00000474568 DNMBPQ6XZF7 1577 aa28.44■■■□□ 2.14
ITGB1-210ENST00000474568 ABCC8Q09428 1581 aa28.42■■■□□ 2.14
ITGB1-210ENST00000474568 IFT140Q96RY7 1462 aa28.37■■■□□ 2.13
ITGB1-210ENST00000474568 ZNF608Q9ULD9 1512 aaPredicted RBP28.33■■■□□ 2.13
ITGB1-210ENST00000474568 POLA1P09884 1462 aaPredicted RBP28.27■■■□□ 2.12
ITGB1-210ENST00000474568 CUX1P39880 1505 aa28.26■■■□□ 2.11
ITGB1-210ENST00000474568 RAD54L2Q9Y4B4 1467 aa28.22■■■□□ 2.11
ITGB1-210ENST00000474568 FGD5Q6ZNL6 1462 aa28.2■■■□□ 2.1
ITGB1-210ENST00000474568 SOGA1O94964 1423 aa28.18■■■□□ 2.1
ITGB1-210ENST00000474568 TARBP1Q13395 1621 aaKnown RBP28.17■■■□□ 2.1
ITGB1-210ENST00000474568 AQRO60306 1485 aaKnown RBP eCLIP28.15■■■□□ 2.13e-6■□□□□ 10.3
ITGB1-210ENST00000474568 EIF4G3O43432 1585 aaKnown RBP28.13■■■□□ 2.09
ITGB1-210ENST00000474568 TDRD9Q8NDG6 1382 aaKnown RBP28.1■■■□□ 2.09
ITGB1-210ENST00000474568 OSCARQ8IYS5 282 aa28.04■■■□□ 2.08
ITGB1-210ENST00000474568 WRNQ14191 1432 aaPredicted RBP eCLIP28.03■■■□□ 2.08
ITGB1-210ENST00000474568 SYNJ1O43426 1573 aa27.95■■■□□ 2.07
ITGB1-210ENST00000474568 FBLN2P98095 1184 aa27.93■■■□□ 2.06
ITGB1-210ENST00000474568 TOP2BQ02880 1626 aa27.91■■■□□ 2.06
ITGB1-210ENST00000474568 BIVM-ERCC5R4GMW8 1640 aa27.88■■■□□ 2.05
ITGB1-210ENST00000474568 SNAPC4Q5SXM2 1469 aa27.87■■■□□ 2.05
ITGB1-210ENST00000474568 ABCA10Q8WWZ4 1543 aa27.87■■■□□ 2.05
ITGB1-210ENST00000474568 WDR97A6NE52 1622 aa27.86■■■□□ 2.05
ITGB1-210ENST00000474568 GRIN2BQ13224 1484 aa27.83■■■□□ 2.05
ITGB1-210ENST00000474568 GAPVD1Q14C86 1478 aa27.83■■■□□ 2.04
ITGB1-210ENST00000474568 CHD1O14646 1710 aa27.78■■■□□ 2.04
ITGB1-210ENST00000474568 CHMP7Q8WUX9 453 aaPredicted RBP27.76■■■□□ 2.03
ITGB1-210ENST00000474568 MAGI1Q96QZ7 1491 aaPredicted RBP27.75■■■□□ 2.03
ITGB1-210ENST00000474568 ABCA5Q8WWZ7 1642 aa27.74■■■□□ 2.03
ITGB1-210ENST00000474568 TRIM41Q8WV44 630 aa27.71■■■□□ 2.03
ITGB1-210ENST00000474568 PBRM1Q86U86 1689 aa27.71■■■□□ 2.03
ITGB1-210ENST00000474568 SYNJ2O15056 1496 aa27.67■■■□□ 2.02
ITGB1-210ENST00000474568 RIMBP3CA6NJZ7 1639 aa27.56■■■□□ 2
ITGB1-210ENST00000474568 RIMBP3BA6NNM3 1639 aa27.56■■■□□ 2
ITGB1-210ENST00000474568 RIMBP3Q9UFD9 1639 aa27.56■■■□□ 2
ITGB1-210ENST00000474568 ARHGEF11O15085 1522 aa27.56■■■□□ 2
ITGB1-210ENST00000474568 ADAMTS12P58397 1594 aa27.52■■■□□ 2
ITGB1-210ENST00000474568 ERICH3Q5RHP9 1530 aa27.51■■□□□ 1.99
ITGB1-210ENST00000474568 FHAD1B1AJZ9 1412 aa27.5■■□□□ 1.99
ITGB1-210ENST00000474568 CLASP1Q7Z460 1538 aa27.49■■□□□ 1.99
ITGB1-210ENST00000474568 GRIN2AQ12879 1464 aa27.48■■□□□ 1.99
ITGB1-210ENST00000474568 KIF27Q86VH2 1401 aa27.44■■□□□ 1.98
ITGB1-210ENST00000474568 CYB5RLQ6IPT4 315 aa27.41■■□□□ 1.98
ITGB1-210ENST00000474568 IGF1RP08069 1367 aa27.36■■□□□ 1.97
ITGB1-210ENST00000474568 CEP170Q5SW79 1584 aa27.35■■□□□ 1.97
ITGB1-210ENST00000474568 ARAP1Q96P48 1450 aa27.35■■□□□ 1.97
ITGB1-210ENST00000474568 NUP160Q12769 1436 aa27.34■■□□□ 1.97
ITGB1-210ENST00000474568 CARMIL1Q5VZK9 1371 aa27.22■■□□□ 1.95
ITGB1-210ENST00000474568 RUSC2Q8N2Y8 1516 aa27.21■■□□□ 1.95
ITGB1-210ENST00000474568 CUL7Q14999 1698 aa27.2■■□□□ 1.94
ITGB1-210ENST00000474568 ERCC6L2Q5T890 1561 aa27.18■■□□□ 1.94
ITGB1-210ENST00000474568 JPH4Q96JJ6 628 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms