RNA–Protein interactions for RNA: ENST00000472027.1

SYN3-211, Transcript of synapsin III, humanhuman

TSL 4

Gene SYN3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYN3-211ENST00000472027 NISCHQ9Y2I1 1504 aa22.27■■□□□ 1.16
SYN3-211ENST00000472027 CCDC180Q9P1Z9 1646 aa19.75■□□□□ 0.75
SYN3-211ENST00000472027 ABCC9O60706 1549 aa19.5■□□□□ 0.71
SYN3-211ENST00000472027 DCAF8L2P0C7V8 631 aa18.75■□□□□ 0.59
SYN3-211ENST00000472027 RB1CC1Q8TDY2 1594 aa18.68■□□□□ 0.58
SYN3-211ENST00000472027 NACADO15069 1562 aa18.64■□□□□ 0.58
SYN3-211ENST00000472027 ZCCHC6Q5VYS8 1495 aaKnown RBP18.52■□□□□ 0.55
SYN3-211ENST00000472027 MYO15BQ96JP2 1530 aa18.5■□□□□ 0.55
SYN3-211ENST00000472027 DCAF1Q9Y4B6 1507 aa18.4■□□□□ 0.54
SYN3-211ENST00000472027 PABPN1Q86U42 306 aaKnown RBP eCLIP18.27■□□□□ 0.52
SYN3-211ENST00000472027 UNC13AQ9UPW8 1703 aa18.2■□□□□ 0.5
SYN3-211ENST00000472027 BICRAQ9NZM4 1560 aa18.12■□□□□ 0.49
SYN3-211ENST00000472027 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
SYN3-211ENST00000472027 DNAJC5BQ9UF47 199 aa18.03■□□□□ 0.48
SYN3-211ENST00000472027 SHROOM4Q9ULL8 1493 aa17.88■□□□□ 0.45
SYN3-211ENST00000472027 EIF4G1Q04637 1599 aaKnown RBP17.65■□□□□ 0.42
SYN3-211ENST00000472027 CC2D2AQ9P2K1 1620 aa17.6■□□□□ 0.41
SYN3-211ENST00000472027 CECR2Q9BXF3 1484 aa17.51■□□□□ 0.39
SYN3-211ENST00000472027 SMARCA4P51532 1647 aa17.26■□□□□ 0.35
SYN3-211ENST00000472027 BAZ1AQ9NRL2 1556 aaPredicted RBP17.25■□□□□ 0.35
SYN3-211ENST00000472027 NCAPD3P42695 1498 aa17.24■□□□□ 0.35
SYN3-211ENST00000472027 ATAD2BQ9ULI0 1458 aa17.24■□□□□ 0.35
SYN3-211ENST00000472027 SMARCA2P51531 1590 aa17.17■□□□□ 0.34
SYN3-211ENST00000472027 MROH2BQ7Z745 1585 aa17.17■□□□□ 0.34
SYN3-211ENST00000472027 HMGXB3Q12766 1538 aa17.09■□□□□ 0.33
SYN3-211ENST00000472027 PEG3Q9GZU2 1588 aa17.09■□□□□ 0.33
SYN3-211ENST00000472027 BAZ1BQ9UIG0 1483 aaKnown RBP17.07■□□□□ 0.32
SYN3-211ENST00000472027 WIZO95785 1651 aa16.97■□□□□ 0.31
SYN3-211ENST00000472027 RSF1Q96T23 1441 aaPredicted RBP16.96■□□□□ 0.31
SYN3-211ENST00000472027 NESP48681 1621 aa16.85■□□□□ 0.29
SYN3-211ENST00000472027 ERCC6Q03468 1493 aa16.8■□□□□ 0.28
SYN3-211ENST00000472027 TOP2AP11388 1531 aaKnown RBP16.76■□□□□ 0.27
SYN3-211ENST00000472027 LAMC3Q9Y6N6 1575 aa16.76■□□□□ 0.27
SYN3-211ENST00000472027 CADPSQ9ULU8 1353 aa16.76■□□□□ 0.27
SYN3-211ENST00000472027 PDS5BQ9NTI5 1447 aa16.69■□□□□ 0.26
SYN3-211ENST00000472027 CUX2O14529 1486 aa16.63■□□□□ 0.25
SYN3-211ENST00000472027 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
SYN3-211ENST00000472027 CFTRP13569 1480 aa16.61■□□□□ 0.25
SYN3-211ENST00000472027 KIF21AQ7Z4S6 1674 aa16.58■□□□□ 0.24
SYN3-211ENST00000472027 THOC2Q8NI27 1593 aaKnown RBP16.55■□□□□ 0.24
SYN3-211ENST00000472027 SUPT5HO00267 1087 aaKnown RBP16.54■□□□□ 0.24
SYN3-211ENST00000472027 FANCD2Q9BXW9 1451 aa16.54■□□□□ 0.24
SYN3-211ENST00000472027 CEP164Q9UPV0 1460 aa16.5■□□□□ 0.23
SYN3-211ENST00000472027 MRC2Q9UBG0 1479 aa16.49■□□□□ 0.23
SYN3-211ENST00000472027 WDR62O43379 1518 aa16.42■□□□□ 0.22
SYN3-211ENST00000472027 PRDM2Q13029 1718 aa16.36■□□□□ 0.21
SYN3-211ENST00000472027 URB2Q14146 1524 aaKnown RBP16.36■□□□□ 0.21
SYN3-211ENST00000472027 DNAJC5Q9H3Z4 198 aa16.28■□□□□ 0.2
SYN3-211ENST00000472027 ABCC8Q09428 1581 aa16.26■□□□□ 0.19
SYN3-211ENST00000472027 TOPBP1Q92547 1522 aa16.25■□□□□ 0.19
SYN3-211ENST00000472027 DNMBPQ6XZF7 1577 aa16.2■□□□□ 0.18
SYN3-211ENST00000472027 IFT140Q96RY7 1462 aa16.16■□□□□ 0.18
SYN3-211ENST00000472027 ZNF608Q9ULD9 1512 aaPredicted RBP16.11■□□□□ 0.17
SYN3-211ENST00000472027 POLA1P09884 1462 aaPredicted RBP16.1■□□□□ 0.17
SYN3-211ENST00000472027 CUX1P39880 1505 aa16.1■□□□□ 0.17
SYN3-211ENST00000472027 SOGA1O94964 1423 aa16.09■□□□□ 0.17
SYN3-211ENST00000472027 RAD54L2Q9Y4B4 1467 aa16.07■□□□□ 0.16
SYN3-211ENST00000472027 FGD5Q6ZNL6 1462 aa16.06■□□□□ 0.16
SYN3-211ENST00000472027 TARBP1Q13395 1621 aaKnown RBP16.05■□□□□ 0.16
SYN3-211ENST00000472027 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.16
SYN3-211ENST00000472027 TDRD9Q8NDG6 1382 aaKnown RBP16.01■□□□□ 0.15
SYN3-211ENST00000472027 OSCARQ8IYS5 282 aa16.01■□□□□ 0.15
SYN3-211ENST00000472027 EIF4G3O43432 1585 aaKnown RBP16■□□□□ 0.15
SYN3-211ENST00000472027 WRNQ14191 1432 aaPredicted RBP eCLIP15.99■□□□□ 0.15
SYN3-211ENST00000472027 TOP2BQ02880 1626 aa15.92■□□□□ 0.14
SYN3-211ENST00000472027 SYNJ1O43426 1573 aa15.92■□□□□ 0.14
SYN3-211ENST00000472027 BIVM-ERCC5R4GMW8 1640 aa15.9■□□□□ 0.14
SYN3-211ENST00000472027 FBLN2P98095 1184 aa15.9■□□□□ 0.14
SYN3-211ENST00000472027 WDR97A6NE52 1622 aa15.9■□□□□ 0.14
SYN3-211ENST00000472027 ABCA10Q8WWZ4 1543 aa15.89■□□□□ 0.13
SYN3-211ENST00000472027 GRIN2BQ13224 1484 aa15.87■□□□□ 0.13
SYN3-211ENST00000472027 GAPVD1Q14C86 1478 aa15.87■□□□□ 0.13
SYN3-211ENST00000472027 SNAPC4Q5SXM2 1469 aa15.85■□□□□ 0.13
SYN3-211ENST00000472027 CHMP7Q8WUX9 453 aaPredicted RBP15.83■□□□□ 0.12
SYN3-211ENST00000472027 MAGI1Q96QZ7 1491 aaPredicted RBP15.82■□□□□ 0.12
SYN3-211ENST00000472027 ABCA5Q8WWZ7 1642 aa15.8■□□□□ 0.12
SYN3-211ENST00000472027 CHD1O14646 1710 aa15.79■□□□□ 0.12
SYN3-211ENST00000472027 PBRM1Q86U86 1689 aa15.77■□□□□ 0.12
SYN3-211ENST00000472027 SYNJ2O15056 1496 aa15.77■□□□□ 0.11
SYN3-211ENST00000472027 TRIM41Q8WV44 630 aa15.73■□□□□ 0.11
SYN3-211ENST00000472027 ERICH3Q5RHP9 1530 aa15.69■□□□□ 0.1
SYN3-211ENST00000472027 FHAD1B1AJZ9 1412 aa15.68■□□□□ 0.1
SYN3-211ENST00000472027 ARHGEF11O15085 1522 aa15.68■□□□□ 0.1
SYN3-211ENST00000472027 RIMBP3CA6NJZ7 1639 aa15.67■□□□□ 0.1
SYN3-211ENST00000472027 RIMBP3BA6NNM3 1639 aa15.67■□□□□ 0.1
SYN3-211ENST00000472027 RIMBP3Q9UFD9 1639 aa15.67■□□□□ 0.1
SYN3-211ENST00000472027 KIF27Q86VH2 1401 aa15.67■□□□□ 0.1
SYN3-211ENST00000472027 ADAMTS12P58397 1594 aa15.66■□□□□ 0.1
SYN3-211ENST00000472027 GRIN2AQ12879 1464 aa15.65■□□□□ 0.1
SYN3-211ENST00000472027 CLASP1Q7Z460 1538 aa15.65■□□□□ 0.1
SYN3-211ENST00000472027 IGF1RP08069 1367 aa15.64■□□□□ 0.09
SYN3-211ENST00000472027 CYB5RLQ6IPT4 315 aa15.62■□□□□ 0.09
SYN3-211ENST00000472027 NUP160Q12769 1436 aa15.6■□□□□ 0.09
SYN3-211ENST00000472027 CEP170Q5SW79 1584 aa15.57■□□□□ 0.08
SYN3-211ENST00000472027 ARAP1Q96P48 1450 aa15.55■□□□□ 0.08
SYN3-211ENST00000472027 CARMIL1Q5VZK9 1371 aa15.54■□□□□ 0.08
SYN3-211ENST00000472027 RUSC2Q8N2Y8 1516 aa15.53■□□□□ 0.08
SYN3-211ENST00000472027 JPH4Q96JJ6 628 aa15.51■□□□□ 0.07
SYN3-211ENST00000472027 CUL7Q14999 1698 aa15.51■□□□□ 0.07
SYN3-211ENST00000472027 ERCC6L2Q5T890 1561 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms