RNA–Protein interactions for RNA: ENST00000469541.5

ITM2A-205, Transcript of integral membrane protein 2A, humanhuman

TSL 2

Gene ITM2A, Length 879 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITM2A-205ENST00000469541 AEBP2Q6ZN18 517 aaPredicted RBP24■■□□□ 1.43
ITM2A-205ENST00000469541 CHIC1Q5VXU3 224 aa22.41■■□□□ 1.18
ITM2A-205ENST00000469541 SENP3Q9H4L4 574 aaPredicted RBP20.42■□□□□ 0.86
ITM2A-205ENST00000469541 PHF23Q9BUL5 403 aaPredicted RBP20.19■□□□□ 0.82
ITM2A-205ENST00000469541 NISCHQ9Y2I1 1504 aa19.71■□□□□ 0.75
ITM2A-205ENST00000469541 FOXD1Q16676 465 aa19.16■□□□□ 0.66
ITM2A-205ENST00000469541 POTEDQ86YR6 584 aa18.18■□□□□ 0.5
ITM2A-205ENST00000469541 MSH5O43196 834 aa17.96■□□□□ 0.47
ITM2A-205ENST00000469541 PIAS4Q8N2W9 510 aaPredicted RBP17.74■□□□□ 0.43
ITM2A-205ENST00000469541 PLPPR3Q6T4P5 718 aa17.72■□□□□ 0.43
ITM2A-205ENST00000469541 PPP6R1Q9UPN7 881 aa17.71■□□□□ 0.43
ITM2A-205ENST00000469541 ADRA2BP18089 450 aa17.6■□□□□ 0.41
ITM2A-205ENST00000469541 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
ITM2A-205ENST00000469541 ZCCHC6Q5VYS8 1495 aaKnown RBP16.58■□□□□ 0.24
ITM2A-205ENST00000469541 DCAF1Q9Y4B6 1507 aa16.35■□□□□ 0.21
ITM2A-205ENST00000469541 MAPK8IP2Q13387 824 aaPredicted RBP16.3■□□□□ 0.2
ITM2A-205ENST00000469541 DMRT2Q9Y5R5 561 aa16.18■□□□□ 0.18
ITM2A-205ENST00000469541 MYO15BQ96JP2 1530 aa16.16■□□□□ 0.18
ITM2A-205ENST00000469541 ABCC9O60706 1549 aa16.1■□□□□ 0.17
ITM2A-205ENST00000469541 DCAF8L2P0C7V8 631 aa16.04■□□□□ 0.16
ITM2A-205ENST00000469541 SCAF1Q9H7N4 1312 aaKnown RBP16.01■□□□□ 0.15
ITM2A-205ENST00000469541 NACADO15069 1562 aa15.97■□□□□ 0.15
ITM2A-205ENST00000469541 SHROOM4Q9ULL8 1493 aa15.96■□□□□ 0.14
ITM2A-205ENST00000469541 RB1CC1Q8TDY2 1594 aa15.79■□□□□ 0.12
ITM2A-205ENST00000469541 SCRIBQ14160 1630 aa15.72■□□□□ 0.11
ITM2A-205ENST00000469541 CACNB1Q02641 598 aaPredicted RBP15.64■□□□□ 0.09
ITM2A-205ENST00000469541 PPP4R3CPQ6ZMV5 832 aa15.53■□□□□ 0.08
ITM2A-205ENST00000469541 UNC13AQ9UPW8 1703 aa15.53■□□□□ 0.08
ITM2A-205ENST00000469541 DCAF8L1A6NGE4 600 aa15.48■□□□□ 0.07
ITM2A-205ENST00000469541 HOXD11P31277 338 aaPredicted RBP15.47■□□□□ 0.07
ITM2A-205ENST00000469541 BICRAQ9NZM4 1560 aa15.4■□□□□ 0.06
ITM2A-205ENST00000469541 SUPT5HO00267 1087 aaKnown RBP15.36■□□□□ 0.05
ITM2A-205ENST00000469541 RNF39Q9H2S5 420 aa15.34■□□□□ 0.05
ITM2A-205ENST00000469541 RSF1Q96T23 1441 aaPredicted RBP15.32■□□□□ 0.04
ITM2A-205ENST00000469541 CECR2Q9BXF3 1484 aa15.32■□□□□ 0.04
ITM2A-205ENST00000469541 CNKSR2Q8WXI2 1034 aa15.29■□□□□ 0.04
ITM2A-205ENST00000469541 RNF216Q9NWF9 866 aaPredicted RBP15.24■□□□□ 0.03
ITM2A-205ENST00000469541 MROH2BQ7Z745 1585 aa15.23■□□□□ 0.03
ITM2A-205ENST00000469541 BAZ1AQ9NRL2 1556 aaPredicted RBP15.19■□□□□ 0.02
ITM2A-205ENST00000469541 PABPN1Q86U42 306 aaKnown RBP eCLIP15.18■□□□□ 0.02
ITM2A-205ENST00000469541 SMARCA4P51532 1647 aa15.13■□□□□ 0.01
ITM2A-205ENST00000469541 WIZO95785 1651 aa15.09■□□□□ 0.01
ITM2A-205ENST00000469541 C1QBPQ07021 282 aaKnown RBP15.08■□□□□ 0
ITM2A-205ENST00000469541 PEG3Q9GZU2 1588 aa15.01□□□□□ -0.01
ITM2A-205ENST00000469541 DNAJC5BQ9UF47 199 aa14.98□□□□□ -0.01
ITM2A-205ENST00000469541 TOP2AP11388 1531 aaKnown RBP14.94□□□□□ -0.02
ITM2A-205ENST00000469541 ATAD2BQ9ULI0 1458 aa14.89□□□□□ -0.03
ITM2A-205ENST00000469541 EIF4G1Q04637 1599 aaKnown RBP14.86□□□□□ -0.03
ITM2A-205ENST00000469541 SMARCA2P51531 1590 aa14.84□□□□□ -0.03
ITM2A-205ENST00000469541 CCDC88BA6NC98 1476 aa14.79□□□□□ -0.04
ITM2A-205ENST00000469541 NCAPD3P42695 1498 aa14.76□□□□□ -0.05
ITM2A-205ENST00000469541 NCBP3Q53F19 620 aaKnown RBP14.76□□□□□ -0.05
ITM2A-205ENST00000469541 BAZ1BQ9UIG0 1483 aaKnown RBP14.74□□□□□ -0.05
ITM2A-205ENST00000469541 HMGXB3Q12766 1538 aa14.73□□□□□ -0.05
ITM2A-205ENST00000469541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.69□□□□□ -0.06
ITM2A-205ENST00000469541 CC2D2AQ9P2K1 1620 aa14.63□□□□□ -0.07
ITM2A-205ENST00000469541 NPM3O75607 178 aaKnown RBP14.62□□□□□ -0.07
ITM2A-205ENST00000469541 TRIM41Q8WV44 630 aa14.47□□□□□ -0.09
ITM2A-205ENST00000469541 ABCC8Q09428 1581 aa14.45□□□□□ -0.1
ITM2A-205ENST00000469541 CFTRP13569 1480 aa14.44□□□□□ -0.1
ITM2A-205ENST00000469541 U3KPZ7 1027 aaPredicted RBP14.38□□□□□ -0.11
ITM2A-205ENST00000469541 PRDM2Q13029 1718 aa14.36□□□□□ -0.11
ITM2A-205ENST00000469541 WRNQ14191 1432 aaPredicted RBP eCLIP14.36□□□□□ -0.11
ITM2A-205ENST00000469541 CADPSQ9ULU8 1353 aa14.35□□□□□ -0.11
ITM2A-205ENST00000469541 SYNJ1O43426 1573 aa14.34□□□□□ -0.11
ITM2A-205ENST00000469541 SPINK5Q9NQ38 1064 aaPredicted RBP14.29□□□□□ -0.12
ITM2A-205ENST00000469541 DSG3P32926 999 aa14.28□□□□□ -0.12
ITM2A-205ENST00000469541 BIVM-ERCC5R4GMW8 1640 aa14.28□□□□□ -0.12
ITM2A-205ENST00000469541 TOP2BQ02880 1626 aa14.27□□□□□ -0.12
ITM2A-205ENST00000469541 LOC105371045A0A1W2PR82 267 aa14.24□□□□□ -0.13
ITM2A-205ENST00000469541 CUX1P39880 1505 aa14.24□□□□□ -0.13
ITM2A-205ENST00000469541 CAPN15O75808 1086 aa14.22□□□□□ -0.13
ITM2A-205ENST00000469541 LAMC3Q9Y6N6 1575 aa14.22□□□□□ -0.13
ITM2A-205ENST00000469541 SOGA1O94964 1423 aa14.21□□□□□ -0.13
ITM2A-205ENST00000469541 EEA1Q15075 1411 aa14.2□□□□□ -0.14
ITM2A-205ENST00000469541 NESP48681 1621 aa14.19□□□□□ -0.14
ITM2A-205ENST00000469541 RUSC2Q8N2Y8 1516 aa14.18□□□□□ -0.14
ITM2A-205ENST00000469541 FANCD2Q9BXW9 1451 aa14.17□□□□□ -0.14
ITM2A-205ENST00000469541 FAM9AQ8IZU1 332 aaPredicted RBP14.16□□□□□ -0.14
ITM2A-205ENST00000469541 POTEHQ6S545 545 aa14.15□□□□□ -0.14
ITM2A-205ENST00000469541 SLC4A2P04920 1241 aa14.09□□□□□ -0.15
ITM2A-205ENST00000469541 CSRNP3Q8WYN3 585 aa14.09□□□□□ -0.15
ITM2A-205ENST00000469541 DNMBPQ6XZF7 1577 aa14.08□□□□□ -0.16
ITM2A-205ENST00000469541 PDS5BQ9NTI5 1447 aa14.06□□□□□ -0.16
ITM2A-205ENST00000469541 CEP164Q9UPV0 1460 aa14.05□□□□□ -0.16
ITM2A-205ENST00000469541 TOPBP1Q92547 1522 aa14.05□□□□□ -0.16
ITM2A-205ENST00000469541 KCNA4P22459 653 aa14.04□□□□□ -0.16
ITM2A-205ENST00000469541 FGD5Q6ZNL6 1462 aa14.04□□□□□ -0.16
ITM2A-205ENST00000469541 KIF21BO75037 1637 aa14.04□□□□□ -0.16
ITM2A-205ENST00000469541 URB2Q14146 1524 aaKnown RBP14.03□□□□□ -0.16
ITM2A-205ENST00000469541 KIF21AQ7Z4S6 1674 aa14.02□□□□□ -0.16
ITM2A-205ENST00000469541 TNIKQ9UKE5 1360 aa13.98□□□□□ -0.17
ITM2A-205ENST00000469541 GOLGA3Q08378 1498 aa13.98□□□□□ -0.17
ITM2A-205ENST00000469541 PRXQ9BXM0 1461 aa13.98□□□□□ -0.17
ITM2A-205ENST00000469541 POLA1P09884 1462 aaPredicted RBP13.97□□□□□ -0.17
ITM2A-205ENST00000469541 KIF27Q86VH2 1401 aa13.97□□□□□ -0.17
ITM2A-205ENST00000469541 ABCA10Q8WWZ4 1543 aa13.95□□□□□ -0.18
ITM2A-205ENST00000469541 TRHP20396 242 aaPredicted RBP13.94□□□□□ -0.18
ITM2A-205ENST00000469541 ERICH3Q5RHP9 1530 aa13.93□□□□□ -0.18
ITM2A-205ENST00000469541 CUX2O14529 1486 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms