RNA–Protein interactions for RNA: ENST00000468136.5

MSH5-213, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-213ENST00000468136 NISCHQ9Y2I1 1504 aa22.74■■□□□ 1.23
MSH5-213ENST00000468136 CCDC180Q9P1Z9 1646 aa19.84■□□□□ 0.77
MSH5-213ENST00000468136 ZCCHC6Q5VYS8 1495 aaKnown RBP19.13■□□□□ 0.65
MSH5-213ENST00000468136 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
MSH5-213ENST00000468136 MYO15BQ96JP2 1530 aa18.74■□□□□ 0.59
MSH5-213ENST00000468136 DCAF8L2P0C7V8 631 aa18.58■□□□□ 0.56
MSH5-213ENST00000468136 NACADO15069 1562 aa18.49■□□□□ 0.55
MSH5-213ENST00000468136 ABCC9O60706 1549 aa18.45■□□□□ 0.54
MSH5-213ENST00000468136 SHROOM4Q9ULL8 1493 aa18.38■□□□□ 0.53
MSH5-213ENST00000468136 RB1CC1Q8TDY2 1594 aa18.25■□□□□ 0.51
MSH5-213ENST00000468136 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
MSH5-213ENST00000468136 AEBP2Q6ZN18 517 aaPredicted RBP17.83■□□□□ 0.44
MSH5-213ENST00000468136 SUPT5HO00267 1087 aaKnown RBP17.82■□□□□ 0.44
MSH5-213ENST00000468136 UNC13AQ9UPW8 1703 aa17.67■□□□□ 0.42
MSH5-213ENST00000468136 RSF1Q96T23 1441 aaPredicted RBP17.65■□□□□ 0.42
MSH5-213ENST00000468136 BAZ1AQ9NRL2 1556 aaPredicted RBP17.6■□□□□ 0.41
MSH5-213ENST00000468136 BICRAQ9NZM4 1560 aa17.57■□□□□ 0.4
MSH5-213ENST00000468136 CECR2Q9BXF3 1484 aa17.52■□□□□ 0.4
MSH5-213ENST00000468136 MROH2BQ7Z745 1585 aa17.47■□□□□ 0.39
MSH5-213ENST00000468136 SMARCA4P51532 1647 aa17.42■□□□□ 0.38
MSH5-213ENST00000468136 PABPN1Q86U42 306 aaKnown RBP eCLIP17.39■□□□□ 0.378e-6■□□□□ 8.9
MSH5-213ENST00000468136 PEG3Q9GZU2 1588 aa17.31■□□□□ 0.36
MSH5-213ENST00000468136 WIZO95785 1651 aa17.29■□□□□ 0.36
MSH5-213ENST00000468136 TOP2AP11388 1531 aaKnown RBP17.26■□□□□ 0.35
MSH5-213ENST00000468136 SMARCA2P51531 1590 aa17.21■□□□□ 0.35
MSH5-213ENST00000468136 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.35
MSH5-213ENST00000468136 ATAD2BQ9ULI0 1458 aa17.13■□□□□ 0.33
MSH5-213ENST00000468136 EIF4G1Q04637 1599 aaKnown RBP17.07■□□□□ 0.32
MSH5-213ENST00000468136 BAZ1BQ9UIG0 1483 aaKnown RBP17.05■□□□□ 0.32
MSH5-213ENST00000468136 NCAPD3P42695 1498 aa17.04■□□□□ 0.32
MSH5-213ENST00000468136 CCDC88BA6NC98 1476 aa17.03■□□□□ 0.32
MSH5-213ENST00000468136 HMGXB3Q12766 1538 aa17.02■□□□□ 0.32
MSH5-213ENST00000468136 TRIM41Q8WV44 630 aa16.88■□□□□ 0.29
MSH5-213ENST00000468136 CC2D2AQ9P2K1 1620 aa16.75■□□□□ 0.27
MSH5-213ENST00000468136 CFTRP13569 1480 aa16.66■□□□□ 0.26
MSH5-213ENST00000468136 WRNQ14191 1432 aaPredicted RBP eCLIP16.65■□□□□ 0.26
MSH5-213ENST00000468136 EEA1Q15075 1411 aa16.63■□□□□ 0.25
MSH5-213ENST00000468136 CADPSQ9ULU8 1353 aa16.59■□□□□ 0.25
MSH5-213ENST00000468136 ABCC8Q09428 1581 aa16.59■□□□□ 0.25
MSH5-213ENST00000468136 PRDM2Q13029 1718 aa16.53■□□□□ 0.24
MSH5-213ENST00000468136 TOP2BQ02880 1626 aa16.49■□□□□ 0.23
MSH5-213ENST00000468136 BIVM-ERCC5R4GMW8 1640 aa16.46■□□□□ 0.23
MSH5-213ENST00000468136 SYNJ1O43426 1573 aa16.46■□□□□ 0.23
MSH5-213ENST00000468136 LAMC3Q9Y6N6 1575 aa16.43■□□□□ 0.22
MSH5-213ENST00000468136 LOC105371045A0A1W2PR82 267 aa16.42■□□□□ 0.22
MSH5-213ENST00000468136 FAM9AQ8IZU1 332 aaPredicted RBP16.39■□□□□ 0.21
MSH5-213ENST00000468136 CSRNP3Q8WYN3 585 aa16.39■□□□□ 0.21
MSH5-213ENST00000468136 SOGA1O94964 1423 aa16.36■□□□□ 0.21
MSH5-213ENST00000468136 FANCD2Q9BXW9 1451 aa16.35■□□□□ 0.21
MSH5-213ENST00000468136 CUX1P39880 1505 aa16.35■□□□□ 0.21
MSH5-213ENST00000468136 PDS5BQ9NTI5 1447 aa16.34■□□□□ 0.21
MSH5-213ENST00000468136 CEP164Q9UPV0 1460 aa16.29■□□□□ 0.2
MSH5-213ENST00000468136 GOLGA3Q08378 1498 aa16.28■□□□□ 0.2
MSH5-213ENST00000468136 KIF27Q86VH2 1401 aa16.28■□□□□ 0.2
MSH5-213ENST00000468136 TNIKQ9UKE5 1360 aa16.27■□□□□ 0.2
MSH5-213ENST00000468136 KIF21BO75037 1637 aa16.27■□□□□ 0.19
MSH5-213ENST00000468136 DNMBPQ6XZF7 1577 aa16.26■□□□□ 0.19
MSH5-213ENST00000468136 RUSC2Q8N2Y8 1516 aa16.22■□□□□ 0.19
MSH5-213ENST00000468136 NESP48681 1621 aa16.19■□□□□ 0.18
MSH5-213ENST00000468136 ERICH3Q5RHP9 1530 aa16.19■□□□□ 0.18
MSH5-213ENST00000468136 TOPBP1Q92547 1522 aa16.18■□□□□ 0.18
MSH5-213ENST00000468136 FGD5Q6ZNL6 1462 aa16.17■□□□□ 0.18
MSH5-213ENST00000468136 PRXQ9BXM0 1461 aa16.15■□□□□ 0.18
MSH5-213ENST00000468136 UBTFP17480 764 aaKnown RBP16.13■□□□□ 0.17
MSH5-213ENST00000468136 ABCA10Q8WWZ4 1543 aa16.12■□□□□ 0.17
MSH5-213ENST00000468136 CUX2O14529 1486 aa16.11■□□□□ 0.17
MSH5-213ENST00000468136 CEP162Q5TB80 1403 aa16.11■□□□□ 0.17
MSH5-213ENST00000468136 POLA1P09884 1462 aaPredicted RBP16.1■□□□□ 0.17
MSH5-213ENST00000468136 URB2Q14146 1524 aaKnown RBP16.09■□□□□ 0.17
MSH5-213ENST00000468136 DNAJC5BQ9UF47 199 aa16.08■□□□□ 0.16
MSH5-213ENST00000468136 MRC2Q9UBG0 1479 aa16.05■□□□□ 0.16
MSH5-213ENST00000468136 RAPGEF2Q9Y4G8 1499 aa16.05■□□□□ 0.16
MSH5-213ENST00000468136 IGF1RP08069 1367 aa16.05■□□□□ 0.16
MSH5-213ENST00000468136 KIF21AQ7Z4S6 1674 aa16.02■□□□□ 0.16
MSH5-213ENST00000468136 EHMT2Q96KQ7 1210 aa16.01■□□□□ 0.15
MSH5-213ENST00000468136 CARMIL1Q5VZK9 1371 aa16■□□□□ 0.15
MSH5-213ENST00000468136 TRIM26Q12899 539 aaPredicted RBP15.99■□□□□ 0.15
MSH5-213ENST00000468136 CLIP1P30622 1438 aa15.98■□□□□ 0.15
MSH5-213ENST00000468136 WDR97A6NE52 1622 aa15.97■□□□□ 0.15
MSH5-213ENST00000468136 CUL7Q14999 1698 aa15.97■□□□□ 0.15
MSH5-213ENST00000468136 RAD54L2Q9Y4B4 1467 aa15.97■□□□□ 0.15
MSH5-213ENST00000468136 WDR62O43379 1518 aa15.95■□□□□ 0.14
MSH5-213ENST00000468136 IFT140Q96RY7 1462 aa15.92■□□□□ 0.14
MSH5-213ENST00000468136 ERCC6Q03468 1493 aa15.91■□□□□ 0.14
MSH5-213ENST00000468136 ABCA5Q8WWZ7 1642 aa15.91■□□□□ 0.14
MSH5-213ENST00000468136 GAPVD1Q14C86 1478 aa15.91■□□□□ 0.14
MSH5-213ENST00000468136 TARBP1Q13395 1621 aaKnown RBP15.9■□□□□ 0.14
MSH5-213ENST00000468136 VPS8Q8N3P4 1428 aa15.89■□□□□ 0.13
MSH5-213ENST00000468136 PCGF6Q9BYE7 350 aa15.84■□□□□ 0.13
MSH5-213ENST00000468136 TDRD9Q8NDG6 1382 aaKnown RBP15.82■□□□□ 0.12
MSH5-213ENST00000468136 GRIN2BQ13224 1484 aa15.81■□□□□ 0.12
MSH5-213ENST00000468136 THOC2Q8NI27 1593 aaKnown RBP15.8■□□□□ 0.12
MSH5-213ENST00000468136 APLP2Q06481 763 aa15.8■□□□□ 0.12
MSH5-213ENST00000468136 FHAD1B1AJZ9 1412 aa15.79■□□□□ 0.12
MSH5-213ENST00000468136 EFCAB5A4FU69 1503 aa15.77■□□□□ 0.11
MSH5-213ENST00000468136 ARAP1Q96P48 1450 aa15.74■□□□□ 0.11
MSH5-213ENST00000468136 ARHGAP35Q9NRY4 1499 aa15.74■□□□□ 0.11
MSH5-213ENST00000468136 PBRM1Q86U86 1689 aa15.73■□□□□ 0.11
MSH5-213ENST00000468136 CTTNBP2Q8WZ74 1663 aa15.71■□□□□ 0.11
MSH5-213ENST00000468136 ADAMTS12P58397 1594 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms