RNA–Protein interactions for RNA: ENST00000461660.1

ATP13A3-206, Transcript of ATPase 13A3, humanhuman

TSL 1 (best)

Gene ATP13A3, Length 3,517 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP13A3-206ENST00000461660 NISCHQ9Y2I1 1504 aa8.86□□□□□ -0.99
ATP13A3-206ENST00000461660 DCAF8L2P0C7V8 631 aa7.66□□□□□ -1.18
ATP13A3-206ENST00000461660 CCDC180Q9P1Z9 1646 aa7.63□□□□□ -1.19
ATP13A3-206ENST00000461660 AEBP2Q6ZN18 517 aaPredicted RBP7.54□□□□□ -1.2
ATP13A3-206ENST00000461660 SHROOM4Q9ULL8 1493 aa7.45□□□□□ -1.22
ATP13A3-206ENST00000461660 ZCCHC6Q5VYS8 1495 aaKnown RBP7.42□□□□□ -1.22
ATP13A3-206ENST00000461660 ABCC9O60706 1549 aa7.4□□□□□ -1.22
ATP13A3-206ENST00000461660 DCAF1Q9Y4B6 1507 aa7.26□□□□□ -1.25
ATP13A3-206ENST00000461660 SUPT5HO00267 1087 aaKnown RBP7.24□□□□□ -1.25
ATP13A3-206ENST00000461660 POTEDQ86YR6 584 aa7.24□□□□□ -1.25
ATP13A3-206ENST00000461660 NACADO15069 1562 aa7.19□□□□□ -1.26
ATP13A3-206ENST00000461660 MYO15BQ96JP2 1530 aa7.16□□□□□ -1.26
ATP13A3-206ENST00000461660 RB1CC1Q8TDY2 1594 aa7.16□□□□□ -1.26
ATP13A3-206ENST00000461660 SCRIBQ14160 1630 aa7.14□□□□□ -1.27
ATP13A3-206ENST00000461660 CHIC1Q5VXU3 224 aa7.1□□□□□ -1.27
ATP13A3-206ENST00000461660 PABPN1Q86U42 306 aaKnown RBP eCLIP7.05□□□□□ -1.28
ATP13A3-206ENST00000461660 RSF1Q96T23 1441 aaPredicted RBP6.91□□□□□ -1.3
ATP13A3-206ENST00000461660 CECR2Q9BXF3 1484 aa6.89□□□□□ -1.31
ATP13A3-206ENST00000461660 BAZ1AQ9NRL2 1556 aaPredicted RBP6.87□□□□□ -1.31
ATP13A3-206ENST00000461660 MROH2BQ7Z745 1585 aa6.84□□□□□ -1.31
ATP13A3-206ENST00000461660 BICRAQ9NZM4 1560 aa6.8□□□□□ -1.32
ATP13A3-206ENST00000461660 TRIM41Q8WV44 630 aa6.8□□□□□ -1.32
ATP13A3-206ENST00000461660 UNC13AQ9UPW8 1703 aa6.78□□□□□ -1.32
ATP13A3-206ENST00000461660 SMARCA4P51532 1647 aa6.78□□□□□ -1.32
ATP13A3-206ENST00000461660 WIZO95785 1651 aa6.75□□□□□ -1.33
ATP13A3-206ENST00000461660 BAZ1BQ9UIG0 1483 aaKnown RBP6.75□□□□□ -1.33
ATP13A3-206ENST00000461660 SMARCA2P51531 1590 aa6.73□□□□□ -1.33
ATP13A3-206ENST00000461660 TOP2AP11388 1531 aaKnown RBP6.72□□□□□ -1.33
ATP13A3-206ENST00000461660 FAM9AQ8IZU1 332 aaPredicted RBP6.72□□□□□ -1.33
ATP13A3-206ENST00000461660 ATAD2BQ9ULI0 1458 aa6.72□□□□□ -1.33
ATP13A3-206ENST00000461660 EIF4G1Q04637 1599 aaKnown RBP6.69□□□□□ -1.34
ATP13A3-206ENST00000461660 CCDC88BA6NC98 1476 aa6.68□□□□□ -1.34
ATP13A3-206ENST00000461660 EHMT2Q96KQ7 1210 aa6.67□□□□□ -1.34
ATP13A3-206ENST00000461660 NCAPD3P42695 1498 aa6.64□□□□□ -1.35
ATP13A3-206ENST00000461660 PEG3Q9GZU2 1588 aa6.62□□□□□ -1.35
ATP13A3-206ENST00000461660 HMGXB3Q12766 1538 aa6.6□□□□□ -1.35
ATP13A3-206ENST00000461660 LOC105371045A0A1W2PR82 267 aa6.58□□□□□ -1.36
ATP13A3-206ENST00000461660 WRNQ14191 1432 aaPredicted RBP eCLIP6.58□□□□□ -1.36
ATP13A3-206ENST00000461660 CC2D2AQ9P2K1 1620 aa6.58□□□□□ -1.36
ATP13A3-206ENST00000461660 UBTFP17480 764 aaKnown RBP6.56□□□□□ -1.36
ATP13A3-206ENST00000461660 CADPSQ9ULU8 1353 aa6.55□□□□□ -1.36
ATP13A3-206ENST00000461660 ABCC8Q09428 1581 aa6.54□□□□□ -1.36
ATP13A3-206ENST00000461660 CSRNP3Q8WYN3 585 aa6.53□□□□□ -1.36
ATP13A3-206ENST00000461660 EEA1Q15075 1411 aa6.51□□□□□ -1.37
ATP13A3-206ENST00000461660 CFTRP13569 1480 aa6.5□□□□□ -1.37
ATP13A3-206ENST00000461660 SENP3Q9H4L4 574 aaPredicted RBP6.49□□□□□ -1.37
ATP13A3-206ENST00000461660 PDS5BQ9NTI5 1447 aa6.48□□□□□ -1.37
ATP13A3-206ENST00000461660 RANGAP1P46060 587 aaPredicted RBP6.48□□□□□ -1.37
ATP13A3-206ENST00000461660 FANCD2Q9BXW9 1451 aa6.47□□□□□ -1.37
ATP13A3-206ENST00000461660 SOGA1O94964 1423 aa6.46□□□□□ -1.38
ATP13A3-206ENST00000461660 APLP2Q06481 763 aa6.46□□□□□ -1.38
ATP13A3-206ENST00000461660 KIF27Q86VH2 1401 aa6.45□□□□□ -1.38
ATP13A3-206ENST00000461660 CEP164Q9UPV0 1460 aa6.44□□□□□ -1.38
ATP13A3-206ENST00000461660 DNAJC5BQ9UF47 199 aa6.44□□□□□ -1.38
ATP13A3-206ENST00000461660 NESP48681 1621 aa6.43□□□□□ -1.38
ATP13A3-206ENST00000461660 ERCC6Q03468 1493 aa6.43□□□□□ -1.38
ATP13A3-206ENST00000461660 SYNJ1O43426 1573 aa6.42□□□□□ -1.38
ATP13A3-206ENST00000461660 GOLGA3Q08378 1498 aa6.42□□□□□ -1.38
ATP13A3-206ENST00000461660 CUX2O14529 1486 aa6.41□□□□□ -1.38
ATP13A3-206ENST00000461660 LAMC3Q9Y6N6 1575 aa6.4□□□□□ -1.38
ATP13A3-206ENST00000461660 PHF23Q9BUL5 403 aaPredicted RBP6.4□□□□□ -1.38
ATP13A3-206ENST00000461660 TOP2BQ02880 1626 aa6.39□□□□□ -1.39
ATP13A3-206ENST00000461660 CUX1P39880 1505 aa6.39□□□□□ -1.39
ATP13A3-206ENST00000461660 PCGF6Q9BYE7 350 aa6.39□□□□□ -1.39
ATP13A3-206ENST00000461660 TTBK1Q5TCY1 1321 aaPredicted RBP6.39□□□□□ -1.39
ATP13A3-206ENST00000461660 RUSC2Q8N2Y8 1516 aa6.39□□□□□ -1.39
ATP13A3-206ENST00000461660 FGD5Q6ZNL6 1462 aa6.38□□□□□ -1.39
ATP13A3-206ENST00000461660 TNIKQ9UKE5 1360 aa6.38□□□□□ -1.39
ATP13A3-206ENST00000461660 CEP162Q5TB80 1403 aa6.36□□□□□ -1.39
ATP13A3-206ENST00000461660 PPARGC1BQ86YN6 1023 aaKnown RBP6.36□□□□□ -1.39
ATP13A3-206ENST00000461660 TOPBP1Q92547 1522 aa6.36□□□□□ -1.39
ATP13A3-206ENST00000461660 ATP1B4Q9UN42 357 aaPredicted RBP6.36□□□□□ -1.39
ATP13A3-206ENST00000461660 DNMBPQ6XZF7 1577 aa6.35□□□□□ -1.39
ATP13A3-206ENST00000461660 CLIP1P30622 1438 aa6.35□□□□□ -1.39
ATP13A3-206ENST00000461660 CARMIL1Q5VZK9 1371 aa6.35□□□□□ -1.39
ATP13A3-206ENST00000461660 TRIM26Q12899 539 aaPredicted RBP6.35□□□□□ -1.39
ATP13A3-206ENST00000461660 TDRD9Q8NDG6 1382 aaKnown RBP6.34□□□□□ -1.39
ATP13A3-206ENST00000461660 BIVM-ERCC5R4GMW8 1640 aa6.34□□□□□ -1.39
ATP13A3-206ENST00000461660 MRC2Q9UBG0 1479 aa6.33□□□□□ -1.4
ATP13A3-206ENST00000461660 RAD54L2Q9Y4B4 1467 aa6.33□□□□□ -1.4
ATP13A3-206ENST00000461660 POLA1P09884 1462 aaPredicted RBP6.33□□□□□ -1.4
ATP13A3-206ENST00000461660 FBLN2P98095 1184 aa6.33□□□□□ -1.4
ATP13A3-206ENST00000461660 RAPGEF2Q9Y4G8 1499 aa6.33□□□□□ -1.4
ATP13A3-206ENST00000461660 IGF1RP08069 1367 aa6.31□□□□□ -1.4
ATP13A3-206ENST00000461660 URB2Q14146 1524 aaKnown RBP6.31□□□□□ -1.4
ATP13A3-206ENST00000461660 PRDM2Q13029 1718 aa6.31□□□□□ -1.4
ATP13A3-206ENST00000461660 KIF21BO75037 1637 aa6.3□□□□□ -1.4
ATP13A3-206ENST00000461660 P3H3Q8IVL6 736 aa6.29□□□□□ -1.4
ATP13A3-206ENST00000461660 GAPVD1Q14C86 1478 aa6.29□□□□□ -1.4
ATP13A3-206ENST00000461660 ABCA10Q8WWZ4 1543 aa6.29□□□□□ -1.4
ATP13A3-206ENST00000461660 CHMP7Q8WUX9 453 aaPredicted RBP6.29□□□□□ -1.4
ATP13A3-206ENST00000461660 PRXQ9BXM0 1461 aa6.28□□□□□ -1.4
ATP13A3-206ENST00000461660 ERICH3Q5RHP9 1530 aa6.28□□□□□ -1.4
ATP13A3-206ENST00000461660 IFT140Q96RY7 1462 aa6.27□□□□□ -1.41
ATP13A3-206ENST00000461660 AQRO60306 1485 aaKnown RBP eCLIP6.25□□□□□ -1.41
ATP13A3-206ENST00000461660 VPS8Q8N3P4 1428 aa6.25□□□□□ -1.41
ATP13A3-206ENST00000461660 KIF21AQ7Z4S6 1674 aa6.25□□□□□ -1.41
ATP13A3-206ENST00000461660 GRIN2BQ13224 1484 aa6.24□□□□□ -1.41
ATP13A3-206ENST00000461660 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.24□□□□□ -1.41
ATP13A3-206ENST00000461660 HNRNPUL2Q1KMD3 747 aaKnown RBP6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms