RNA–Protein interactions for RNA: ENST00000460558.5

ECHDC1-211, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 301 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-211ENST00000460558 CHIC1Q5VXU3 224 aa13.45□□□□□ -0.26
ECHDC1-211ENST00000460558 AEBP2Q6ZN18 517 aaPredicted RBP13.39□□□□□ -0.27
ECHDC1-211ENST00000460558 PHF23Q9BUL5 403 aaPredicted RBP11.88□□□□□ -0.51
ECHDC1-211ENST00000460558 SENP3Q9H4L4 574 aaPredicted RBP11.27□□□□□ -0.61
ECHDC1-211ENST00000460558 PLPPR3Q6T4P5 718 aa11.07□□□□□ -0.64
ECHDC1-211ENST00000460558 NISCHQ9Y2I1 1504 aa10.57□□□□□ -0.72
ECHDC1-211ENST00000460558 FOXD1Q16676 465 aa10.42□□□□□ -0.74
ECHDC1-211ENST00000460558 ADRA2BP18089 450 aa10.34□□□□□ -0.75
ECHDC1-211ENST00000460558 PPP6R1Q9UPN7 881 aa10.33□□□□□ -0.76
ECHDC1-211ENST00000460558 ABCC9O60706 1549 aa10.25□□□□□ -0.77
ECHDC1-211ENST00000460558 DNAJC5BQ9UF47 199 aa10.03□□□□□ -0.8
ECHDC1-211ENST00000460558 KCNA4P22459 653 aa10.01□□□□□ -0.81
ECHDC1-211ENST00000460558 PIAS4Q8N2W9 510 aaPredicted RBP9.87□□□□□ -0.83
ECHDC1-211ENST00000460558 CCDC180Q9P1Z9 1646 aa9.82□□□□□ -0.84
ECHDC1-211ENST00000460558 PPP4R3CPQ6ZMV5 832 aa9.78□□□□□ -0.84
ECHDC1-211ENST00000460558 EHMT2Q96KQ7 1210 aa9.68□□□□□ -0.86
ECHDC1-211ENST00000460558 DNAJC5Q9H3Z4 198 aa9.67□□□□□ -0.86
ECHDC1-211ENST00000460558 NCBP3Q53F19 620 aaKnown RBP9.62□□□□□ -0.87
ECHDC1-211ENST00000460558 RB1CC1Q8TDY2 1594 aa9.58□□□□□ -0.88
ECHDC1-211ENST00000460558 SLC4A1APQ9BWU0 796 aaKnown RBP9.57□□□□□ -0.88
ECHDC1-211ENST00000460558 NPM3O75607 178 aaKnown RBP9.53□□□□□ -0.88
ECHDC1-211ENST00000460558 CSRNP3Q8WYN3 585 aa9.5□□□□□ -0.89
ECHDC1-211ENST00000460558 MSH5O43196 834 aa9.45□□□□□ -0.9
ECHDC1-211ENST00000460558 CNKSR2Q8WXI2 1034 aa9.44□□□□□ -0.9
ECHDC1-211ENST00000460558 UNC13AQ9UPW8 1703 aa9.43□□□□□ -0.9
ECHDC1-211ENST00000460558 SCAF1Q9H7N4 1312 aaKnown RBP9.42□□□□□ -0.9
ECHDC1-211ENST00000460558 PABPN1Q86U42 306 aaKnown RBP eCLIP9.41□□□□□ -0.9
ECHDC1-211ENST00000460558 POTEDQ86YR6 584 aa9.4□□□□□ -0.9
ECHDC1-211ENST00000460558 NACADO15069 1562 aa9.37□□□□□ -0.91
ECHDC1-211ENST00000460558 CECR2Q9BXF3 1484 aa9.3□□□□□ -0.92
ECHDC1-211ENST00000460558 BICRAQ9NZM4 1560 aa9.28□□□□□ -0.92
ECHDC1-211ENST00000460558 CC2D2AQ9P2K1 1620 aa9.27□□□□□ -0.92
ECHDC1-211ENST00000460558 ZBTB22O15209 634 aa9.25□□□□□ -0.93
ECHDC1-211ENST00000460558 MAPK8IP2Q13387 824 aaPredicted RBP9.23□□□□□ -0.93
ECHDC1-211ENST00000460558 RNF216Q9NWF9 866 aaPredicted RBP9.19□□□□□ -0.94
ECHDC1-211ENST00000460558 SHROOM4Q9ULL8 1493 aa9.14□□□□□ -0.95
ECHDC1-211ENST00000460558 DCAF8L2P0C7V8 631 aa9.12□□□□□ -0.95
ECHDC1-211ENST00000460558 EIF4G1Q04637 1599 aaKnown RBP9.11□□□□□ -0.95
ECHDC1-211ENST00000460558 CUX2O14529 1486 aa9.1□□□□□ -0.95
ECHDC1-211ENST00000460558 FOXD4L1Q9NU39 408 aa9.1□□□□□ -0.95
ECHDC1-211ENST00000460558 DMRT2Q9Y5R5 561 aa9.09□□□□□ -0.95
ECHDC1-211ENST00000460558 HOXD11P31277 338 aaPredicted RBP9.08□□□□□ -0.96
ECHDC1-211ENST00000460558 MYO15BQ96JP2 1530 aa9.04□□□□□ -0.96
ECHDC1-211ENST00000460558 TRIM41Q8WV44 630 aa9.02□□□□□ -0.97
ECHDC1-211ENST00000460558 SLC4A2P04920 1241 aa8.93□□□□□ -0.98
ECHDC1-211ENST00000460558 ERCC6Q03468 1493 aa8.93□□□□□ -0.98
ECHDC1-211ENST00000460558 SCRIBQ14160 1630 aa8.85□□□□□ -0.99
ECHDC1-211ENST00000460558 ATXN8OSP0DMR3 200 aa8.79□□□□□ -1
ECHDC1-211ENST00000460558 MYCNP04198 464 aaPredicted RBP8.78□□□□□ -1
ECHDC1-211ENST00000460558 DCAF1Q9Y4B6 1507 aa8.72□□□□□ -1.01
ECHDC1-211ENST00000460558 THOC2Q8NI27 1593 aaKnown RBP8.72□□□□□ -1.01
ECHDC1-211ENST00000460558 ZCCHC6Q5VYS8 1495 aaKnown RBP8.64□□□□□ -1.03
ECHDC1-211ENST00000460558 NESP48681 1621 aa8.64□□□□□ -1.03
ECHDC1-211ENST00000460558 BAZ1AQ9NRL2 1556 aaPredicted RBP8.62□□□□□ -1.03
ECHDC1-211ENST00000460558 SMARCA2P51531 1590 aa8.61□□□□□ -1.03
ECHDC1-211ENST00000460558 KIF21AQ7Z4S6 1674 aa8.61□□□□□ -1.03
ECHDC1-211ENST00000460558 NCAPD3P42695 1498 aa8.6□□□□□ -1.03
ECHDC1-211ENST00000460558 RIMBP3CA6NJZ7 1639 aa8.56□□□□□ -1.04
ECHDC1-211ENST00000460558 RIMBP3BA6NNM3 1639 aa8.56□□□□□ -1.04
ECHDC1-211ENST00000460558 RIMBP3Q9UFD9 1639 aa8.56□□□□□ -1.04
ECHDC1-211ENST00000460558 LAMC3Q9Y6N6 1575 aa8.56□□□□□ -1.04
ECHDC1-211ENST00000460558 OSCARQ8IYS5 282 aa8.55□□□□□ -1.04
ECHDC1-211ENST00000460558 HMGXB3Q12766 1538 aa8.54□□□□□ -1.04
ECHDC1-211ENST00000460558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.52□□□□□ -1.052e-7■■□□□ 13.4
ECHDC1-211ENST00000460558 ATF5Q9Y2D1 282 aaPredicted RBP8.52□□□□□ -1.05
ECHDC1-211ENST00000460558 U3KPZ7 1027 aaPredicted RBP8.52□□□□□ -1.05
ECHDC1-211ENST00000460558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.51□□□□□ -1.05
ECHDC1-211ENST00000460558 HNRNPUL2Q1KMD3 747 aaKnown RBP8.51□□□□□ -1.05
ECHDC1-211ENST00000460558 SAMD1Q6SPF0 538 aaPredicted RBP8.51□□□□□ -1.05
ECHDC1-211ENST00000460558 DCAF8L1A6NGE4 600 aa8.5□□□□□ -1.05
ECHDC1-211ENST00000460558 ATAD2BQ9ULI0 1458 aa8.5□□□□□ -1.05
ECHDC1-211ENST00000460558 FKBP8Q14318 412 aa8.49□□□□□ -1.05
ECHDC1-211ENST00000460558 PDS5BQ9NTI5 1447 aa8.48□□□□□ -1.05
ECHDC1-211ENST00000460558 TRHP20396 242 aaPredicted RBP8.48□□□□□ -1.05
ECHDC1-211ENST00000460558 WDR62O43379 1518 aa8.46□□□□□ -1.05
ECHDC1-211ENST00000460558 AMER1Q5JTC6 1135 aaPredicted RBP8.46□□□□□ -1.06
ECHDC1-211ENST00000460558 MRC2Q9UBG0 1479 aa8.45□□□□□ -1.06
ECHDC1-211ENST00000460558 ARHGEF11O15085 1522 aa8.45□□□□□ -1.06
ECHDC1-211ENST00000460558 RTN4Q9NQC3 1192 aaKnown RBP8.44□□□□□ -1.06
ECHDC1-211ENST00000460558 BAZ1BQ9UIG0 1483 aaKnown RBP8.41□□□□□ -1.06
ECHDC1-211ENST00000460558 SMARCA4P51532 1647 aa8.4□□□□□ -1.06
ECHDC1-211ENST00000460558 CYB5RLQ6IPT4 315 aa8.38□□□□□ -1.07
ECHDC1-211ENST00000460558 ILDR1Q86SU0 546 aaPredicted RBP8.36□□□□□ -1.07
ECHDC1-211ENST00000460558 ZNF219Q9P2Y4 722 aaPredicted RBP8.33□□□□□ -1.08
ECHDC1-211ENST00000460558 CEP164Q9UPV0 1460 aa8.32□□□□□ -1.08
ECHDC1-211ENST00000460558 PEG3Q9GZU2 1588 aa8.31□□□□□ -1.08
ECHDC1-211ENST00000460558 APLP2Q06481 763 aa8.31□□□□□ -1.08
ECHDC1-211ENST00000460558 CADPSQ9ULU8 1353 aa8.31□□□□□ -1.08
ECHDC1-211ENST00000460558 ARAP1Q96P48 1450 aa8.31□□□□□ -1.08
ECHDC1-211ENST00000460558 CHD1O14646 1710 aa8.26□□□□□ -1.09
ECHDC1-211ENST00000460558 SLC24A1O60721 1099 aa8.24□□□□□ -1.09
ECHDC1-211ENST00000460558 FANCD2Q9BXW9 1451 aa8.24□□□□□ -1.09
ECHDC1-211ENST00000460558 RSF1Q96T23 1441 aaPredicted RBP8.23□□□□□ -1.09
ECHDC1-211ENST00000460558 MKRN4PQ13434 485 aaPredicted RBP8.2□□□□□ -1.1
ECHDC1-211ENST00000460558 PROM2Q8N271 834 aa8.2□□□□□ -1.1
ECHDC1-211ENST00000460558 URB2Q14146 1524 aaKnown RBP8.19□□□□□ -1.1
ECHDC1-211ENST00000460558 RNF39Q9H2S5 420 aa8.17□□□□□ -1.1
ECHDC1-211ENST00000460558 ZNF608Q9ULD9 1512 aaPredicted RBP8.17□□□□□ -1.1
ECHDC1-211ENST00000460558 EIF4G3O43432 1585 aaKnown RBP8.16□□□□□ -1.1
ECHDC1-211ENST00000460558 IFT140Q96RY7 1462 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms