RNA–Protein interactions for RNA: ENST00000460514.1

ABCA4-202, Transcript of ATP binding cassette subfamily A member 4, humanhuman

TSL 5

Gene ABCA4, Length 690 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4-202ENST00000460514 AEBP2Q6ZN18 517 aaPredicted RBP22.65■■□□□ 1.22
ABCA4-202ENST00000460514 CHIC1Q5VXU3 224 aa21.22■□□□□ 0.99
ABCA4-202ENST00000460514 SENP3Q9H4L4 574 aaPredicted RBP19.55■□□□□ 0.72
ABCA4-202ENST00000460514 PHF23Q9BUL5 403 aaPredicted RBP19.12■□□□□ 0.65
ABCA4-202ENST00000460514 POTEDQ86YR6 584 aa18.98■□□□□ 0.63
ABCA4-202ENST00000460514 FOXD1Q16676 465 aa18.32■□□□□ 0.52
ABCA4-202ENST00000460514 NISCHQ9Y2I1 1504 aa17.8■□□□□ 0.44
ABCA4-202ENST00000460514 MSH5O43196 834 aa17.61■□□□□ 0.41
ABCA4-202ENST00000460514 PIAS4Q8N2W9 510 aaPredicted RBP16.89■□□□□ 0.29
ABCA4-202ENST00000460514 PPP6R1Q9UPN7 881 aa16.27■□□□□ 0.2
ABCA4-202ENST00000460514 ADRA2BP18089 450 aa16.17■□□□□ 0.18
ABCA4-202ENST00000460514 PLPPR3Q6T4P5 718 aa15.92■□□□□ 0.14
ABCA4-202ENST00000460514 CACNB1Q02641 598 aaPredicted RBP15.77■□□□□ 0.12
ABCA4-202ENST00000460514 CCDC180Q9P1Z9 1646 aa15.74■□□□□ 0.11
ABCA4-202ENST00000460514 DMRT2Q9Y5R5 561 aa15.31■□□□□ 0.04
ABCA4-202ENST00000460514 MAPK8IP2Q13387 824 aaPredicted RBP15.18■□□□□ 0.02
ABCA4-202ENST00000460514 ABCC9O60706 1549 aa15.09■□□□□ 0.01
ABCA4-202ENST00000460514 ZCCHC6Q5VYS8 1495 aaKnown RBP14.89□□□□□ -0.03
ABCA4-202ENST00000460514 RNF39Q9H2S5 420 aa14.88□□□□□ -0.03
ABCA4-202ENST00000460514 SCAF1Q9H7N4 1312 aaKnown RBP14.87□□□□□ -0.03
ABCA4-202ENST00000460514 DCAF8L1A6NGE4 600 aa14.79□□□□□ -0.04
ABCA4-202ENST00000460514 DCAF8L2P0C7V8 631 aa14.78□□□□□ -0.04
ABCA4-202ENST00000460514 DCAF1Q9Y4B6 1507 aa14.77□□□□□ -0.04
ABCA4-202ENST00000460514 MYO15BQ96JP2 1530 aa14.75□□□□□ -0.05
ABCA4-202ENST00000460514 NACADO15069 1562 aa14.74□□□□□ -0.05
ABCA4-202ENST00000460514 RB1CC1Q8TDY2 1594 aa14.68□□□□□ -0.06
ABCA4-202ENST00000460514 POTEHQ6S545 545 aa14.68□□□□□ -0.06
ABCA4-202ENST00000460514 C1QBPQ07021 282 aaKnown RBP14.63□□□□□ -0.07
ABCA4-202ENST00000460514 SCRIBQ14160 1630 aa14.34□□□□□ -0.11
ABCA4-202ENST00000460514 HOXD11P31277 338 aaPredicted RBP14.32□□□□□ -0.12
ABCA4-202ENST00000460514 UNC13AQ9UPW8 1703 aa14.29□□□□□ -0.12
ABCA4-202ENST00000460514 SHROOM4Q9ULL8 1493 aa14.19□□□□□ -0.14
ABCA4-202ENST00000460514 BICRAQ9NZM4 1560 aa14.16□□□□□ -0.14
ABCA4-202ENST00000460514 PABPN1Q86U42 306 aaKnown RBP eCLIP14.14□□□□□ -0.15
ABCA4-202ENST00000460514 DNAJC5BQ9UF47 199 aa14.05□□□□□ -0.16
ABCA4-202ENST00000460514 RNF216Q9NWF9 866 aaPredicted RBP13.95□□□□□ -0.18
ABCA4-202ENST00000460514 EIF4G1Q04637 1599 aaKnown RBP13.8□□□□□ -0.2
ABCA4-202ENST00000460514 BAZ1AQ9NRL2 1556 aaPredicted RBP13.8□□□□□ -0.2
ABCA4-202ENST00000460514 PPP4R3CPQ6ZMV5 832 aa13.8□□□□□ -0.2
ABCA4-202ENST00000460514 CNKSR2Q8WXI2 1034 aa13.8□□□□□ -0.2
ABCA4-202ENST00000460514 CECR2Q9BXF3 1484 aa13.79□□□□□ -0.2
ABCA4-202ENST00000460514 SMARCA4P51532 1647 aa13.75□□□□□ -0.21
ABCA4-202ENST00000460514 MROH2BQ7Z745 1585 aa13.7□□□□□ -0.22
ABCA4-202ENST00000460514 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.68□□□□□ -0.22
ABCA4-202ENST00000460514 CC2D2AQ9P2K1 1620 aa13.67□□□□□ -0.22
ABCA4-202ENST00000460514 RSF1Q96T23 1441 aaPredicted RBP13.65□□□□□ -0.22
ABCA4-202ENST00000460514 SMARCA2P51531 1590 aa13.65□□□□□ -0.22
ABCA4-202ENST00000460514 PEG3Q9GZU2 1588 aa13.62□□□□□ -0.23
ABCA4-202ENST00000460514 ATAD2BQ9ULI0 1458 aa13.61□□□□□ -0.23
ABCA4-202ENST00000460514 DSG3P32926 999 aa13.58□□□□□ -0.24
ABCA4-202ENST00000460514 NCAPD3P42695 1498 aa13.58□□□□□ -0.24
ABCA4-202ENST00000460514 WIZO95785 1651 aa13.56□□□□□ -0.24
ABCA4-202ENST00000460514 HMGXB3Q12766 1538 aa13.54□□□□□ -0.24
ABCA4-202ENST00000460514 BAZ1BQ9UIG0 1483 aaKnown RBP13.54□□□□□ -0.24
ABCA4-202ENST00000460514 SUPT5HO00267 1087 aaKnown RBP13.53□□□□□ -0.24
ABCA4-202ENST00000460514 TOP2AP11388 1531 aaKnown RBP13.48□□□□□ -0.25
ABCA4-202ENST00000460514 CAPN15O75808 1086 aa13.44□□□□□ -0.26
ABCA4-202ENST00000460514 SPINK5Q9NQ38 1064 aaPredicted RBP13.37□□□□□ -0.27
ABCA4-202ENST00000460514 CCDC88BA6NC98 1476 aa13.29□□□□□ -0.28
ABCA4-202ENST00000460514 SP7Q8TDD2 431 aaPredicted RBP13.25□□□□□ -0.29
ABCA4-202ENST00000460514 U3KPZ7 1027 aaPredicted RBP13.24□□□□□ -0.29
ABCA4-202ENST00000460514 CADPSQ9ULU8 1353 aa13.2□□□□□ -0.3
ABCA4-202ENST00000460514 LAMC3Q9Y6N6 1575 aa13.2□□□□□ -0.3
ABCA4-202ENST00000460514 CFTRP13569 1480 aa13.17□□□□□ -0.3
ABCA4-202ENST00000460514 CHRDL2Q6WN34 429 aa13.14□□□□□ -0.31
ABCA4-202ENST00000460514 PDS5BQ9NTI5 1447 aa13.12□□□□□ -0.31
ABCA4-202ENST00000460514 NESP48681 1621 aa13.11□□□□□ -0.31
ABCA4-202ENST00000460514 PRDM2Q13029 1718 aa13.1□□□□□ -0.31
ABCA4-202ENST00000460514 ERCC6Q03468 1493 aa13.04□□□□□ -0.32
ABCA4-202ENST00000460514 FANCD2Q9BXW9 1451 aa13.04□□□□□ -0.32
ABCA4-202ENST00000460514 RBM42Q9BTD8 480 aaKnown RBP13.04□□□□□ -0.32
ABCA4-202ENST00000460514 ABCB7O75027 752 aa13.02□□□□□ -0.33
ABCA4-202ENST00000460514 CEP164Q9UPV0 1460 aa13.02□□□□□ -0.33
ABCA4-202ENST00000460514 KIF21AQ7Z4S6 1674 aa12.99□□□□□ -0.33
ABCA4-202ENST00000460514 TRHP20396 242 aaPredicted RBP12.97□□□□□ -0.33
ABCA4-202ENST00000460514 NCBP3Q53F19 620 aaKnown RBP12.97□□□□□ -0.33
ABCA4-202ENST00000460514 ABCC8Q09428 1581 aa12.94□□□□□ -0.34
ABCA4-202ENST00000460514 MRC2Q9UBG0 1479 aa12.93□□□□□ -0.34
ABCA4-202ENST00000460514 ZNF219Q9P2Y4 722 aaPredicted RBP12.91□□□□□ -0.34
ABCA4-202ENST00000460514 WRNQ14191 1432 aaPredicted RBP eCLIP12.89□□□□□ -0.35
ABCA4-202ENST00000460514 DNMBPQ6XZF7 1577 aa12.88□□□□□ -0.35
ABCA4-202ENST00000460514 THOC2Q8NI27 1593 aaKnown RBP12.88□□□□□ -0.35
ABCA4-202ENST00000460514 WDR62O43379 1518 aa12.87□□□□□ -0.35
ABCA4-202ENST00000460514 URB2Q14146 1524 aaKnown RBP12.86□□□□□ -0.35
ABCA4-202ENST00000460514 TOPBP1Q92547 1522 aa12.86□□□□□ -0.35
ABCA4-202ENST00000460514 CUX1P39880 1505 aa12.83□□□□□ -0.35
ABCA4-202ENST00000460514 APLP2Q06481 763 aa12.83□□□□□ -0.36
ABCA4-202ENST00000460514 TOP2BQ02880 1626 aa12.83□□□□□ -0.36
ABCA4-202ENST00000460514 BIVM-ERCC5R4GMW8 1640 aa12.82□□□□□ -0.36
ABCA4-202ENST00000460514 CUX2O14529 1486 aa12.81□□□□□ -0.36
ABCA4-202ENST00000460514 TRIM41Q8WV44 630 aa12.8□□□□□ -0.36
ABCA4-202ENST00000460514 SYNJ1O43426 1573 aa12.8□□□□□ -0.36
ABCA4-202ENST00000460514 KCNA4P22459 653 aa12.77□□□□□ -0.37
ABCA4-202ENST00000460514 FGD5Q6ZNL6 1462 aa12.77□□□□□ -0.37
ABCA4-202ENST00000460514 POLA1P09884 1462 aaPredicted RBP12.76□□□□□ -0.37
ABCA4-202ENST00000460514 NPM3O75607 178 aaKnown RBP12.75□□□□□ -0.37
ABCA4-202ENST00000460514 IFT140Q96RY7 1462 aa12.74□□□□□ -0.37
ABCA4-202ENST00000460514 SOGA1O94964 1423 aa12.73□□□□□ -0.37
ABCA4-202ENST00000460514 HAX1O00165 279 aa12.69□□□□□ -0.38
ABCA4-202ENST00000460514 RAD54L2Q9Y4B4 1467 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms