RNA–Protein interactions for RNA: ENST00000454859.7

ECHDC1-210, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ECHDC1, Length 2,341 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-210ENST00000454859 NISCHQ9Y2I1 1504 aa15.51■□□□□ 0.07
ECHDC1-210ENST00000454859 CCDC180Q9P1Z9 1646 aa13.69□□□□□ -0.22
ECHDC1-210ENST00000454859 AEBP2Q6ZN18 517 aaPredicted RBP13.13□□□□□ -0.31
ECHDC1-210ENST00000454859 ZCCHC6Q5VYS8 1495 aaKnown RBP13.05□□□□□ -0.32
ECHDC1-210ENST00000454859 DCAF1Q9Y4B6 1507 aa13.01□□□□□ -0.33
ECHDC1-210ENST00000454859 MYO15BQ96JP2 1530 aa12.89□□□□□ -0.35
ECHDC1-210ENST00000454859 NACADO15069 1562 aa12.7□□□□□ -0.38
ECHDC1-210ENST00000454859 CHIC1Q5VXU3 224 aa12.66□□□□□ -0.38
ECHDC1-210ENST00000454859 ABCC9O60706 1549 aa12.55□□□□□ -0.4
ECHDC1-210ENST00000454859 RB1CC1Q8TDY2 1594 aa12.53□□□□□ -0.4
ECHDC1-210ENST00000454859 DCAF8L2P0C7V8 631 aa12.46□□□□□ -0.41
ECHDC1-210ENST00000454859 SHROOM4Q9ULL8 1493 aa12.31□□□□□ -0.44
ECHDC1-210ENST00000454859 SCRIBQ14160 1630 aa12.3□□□□□ -0.44
ECHDC1-210ENST00000454859 UNC13AQ9UPW8 1703 aa12.21□□□□□ -0.45
ECHDC1-210ENST00000454859 BICRAQ9NZM4 1560 aa12.05□□□□□ -0.48
ECHDC1-210ENST00000454859 BAZ1AQ9NRL2 1556 aaPredicted RBP12.03□□□□□ -0.48
ECHDC1-210ENST00000454859 RSF1Q96T23 1441 aaPredicted RBP11.97□□□□□ -0.49
ECHDC1-210ENST00000454859 SMARCA4P51532 1647 aa11.92□□□□□ -0.5
ECHDC1-210ENST00000454859 SUPT5HO00267 1087 aaKnown RBP11.91□□□□□ -0.5
ECHDC1-210ENST00000454859 PEG3Q9GZU2 1588 aa11.89□□□□□ -0.51
ECHDC1-210ENST00000454859 CECR2Q9BXF3 1484 aa11.88□□□□□ -0.51
ECHDC1-210ENST00000454859 MROH2BQ7Z745 1585 aa11.88□□□□□ -0.51
ECHDC1-210ENST00000454859 SMARCA2P51531 1590 aa11.79□□□□□ -0.52
ECHDC1-210ENST00000454859 TOP2AP11388 1531 aaKnown RBP11.79□□□□□ -0.52
ECHDC1-210ENST00000454859 WIZO95785 1651 aa11.78□□□□□ -0.52
ECHDC1-210ENST00000454859 PABPN1Q86U42 306 aaKnown RBP eCLIP11.75□□□□□ -0.53
ECHDC1-210ENST00000454859 EIF4G1Q04637 1599 aaKnown RBP11.7□□□□□ -0.54
ECHDC1-210ENST00000454859 HMGXB3Q12766 1538 aa11.69□□□□□ -0.54
ECHDC1-210ENST00000454859 ATAD2BQ9ULI0 1458 aa11.68□□□□□ -0.54
ECHDC1-210ENST00000454859 NCAPD3P42695 1498 aa11.66□□□□□ -0.54
ECHDC1-210ENST00000454859 BAZ1BQ9UIG0 1483 aaKnown RBP11.62□□□□□ -0.55
ECHDC1-210ENST00000454859 POTEDQ86YR6 584 aa11.6□□□□□ -0.55
ECHDC1-210ENST00000454859 CCDC88BA6NC98 1476 aa11.57□□□□□ -0.56
ECHDC1-210ENST00000454859 CC2D2AQ9P2K1 1620 aa11.49□□□□□ -0.57
ECHDC1-210ENST00000454859 PRDM2Q13029 1718 aa11.46□□□□□ -0.58
ECHDC1-210ENST00000454859 SENP3Q9H4L4 574 aaPredicted RBP11.44□□□□□ -0.58
ECHDC1-210ENST00000454859 CFTRP13569 1480 aa11.37□□□□□ -0.59
ECHDC1-210ENST00000454859 TRIM41Q8WV44 630 aa11.34□□□□□ -0.59
ECHDC1-210ENST00000454859 EEA1Q15075 1411 aa11.31□□□□□ -0.6
ECHDC1-210ENST00000454859 CADPSQ9ULU8 1353 aa11.29□□□□□ -0.6
ECHDC1-210ENST00000454859 BIVM-ERCC5R4GMW8 1640 aa11.29□□□□□ -0.6
ECHDC1-210ENST00000454859 LAMC3Q9Y6N6 1575 aa11.29□□□□□ -0.6
ECHDC1-210ENST00000454859 WRNQ14191 1432 aaPredicted RBP eCLIP11.29□□□□□ -0.6
ECHDC1-210ENST00000454859 TOP2BQ02880 1626 aa11.27□□□□□ -0.61
ECHDC1-210ENST00000454859 ABCC8Q09428 1581 aa11.23□□□□□ -0.61
ECHDC1-210ENST00000454859 PHF23Q9BUL5 403 aaPredicted RBP11.21□□□□□ -0.61
ECHDC1-210ENST00000454859 SYNJ1O43426 1573 aa11.2□□□□□ -0.62
ECHDC1-210ENST00000454859 PDS5BQ9NTI5 1447 aa11.15□□□□□ -0.62
ECHDC1-210ENST00000454859 FANCD2Q9BXW9 1451 aa11.14□□□□□ -0.63
ECHDC1-210ENST00000454859 CUX1P39880 1505 aa11.14□□□□□ -0.63
ECHDC1-210ENST00000454859 DNMBPQ6XZF7 1577 aa11.13□□□□□ -0.63
ECHDC1-210ENST00000454859 CEP164Q9UPV0 1460 aa11.1□□□□□ -0.63
ECHDC1-210ENST00000454859 KIF21BO75037 1637 aa11.1□□□□□ -0.63
ECHDC1-210ENST00000454859 CSRNP3Q8WYN3 585 aa11.05□□□□□ -0.64
ECHDC1-210ENST00000454859 ERICH3Q5RHP9 1530 aa11.05□□□□□ -0.64
ECHDC1-210ENST00000454859 KIF27Q86VH2 1401 aa11.04□□□□□ -0.64
ECHDC1-210ENST00000454859 TOPBP1Q92547 1522 aa11.04□□□□□ -0.64
ECHDC1-210ENST00000454859 GOLGA3Q08378 1498 aa11.03□□□□□ -0.64
ECHDC1-210ENST00000454859 SOGA1O94964 1423 aa11.03□□□□□ -0.64
ECHDC1-210ENST00000454859 WDR97A6NE52 1622 aa11.03□□□□□ -0.64
ECHDC1-210ENST00000454859 KIF21AQ7Z4S6 1674 aa11.02□□□□□ -0.65
ECHDC1-210ENST00000454859 NESP48681 1621 aa11.02□□□□□ -0.65
ECHDC1-210ENST00000454859 TNIKQ9UKE5 1360 aa11.01□□□□□ -0.65
ECHDC1-210ENST00000454859 ABCA10Q8WWZ4 1543 aa11□□□□□ -0.65
ECHDC1-210ENST00000454859 FGD5Q6ZNL6 1462 aa11□□□□□ -0.65
ECHDC1-210ENST00000454859 MRC2Q9UBG0 1479 aa10.98□□□□□ -0.65
ECHDC1-210ENST00000454859 PRXQ9BXM0 1461 aa10.97□□□□□ -0.65
ECHDC1-210ENST00000454859 DNAJC5BQ9UF47 199 aa10.97□□□□□ -0.65
ECHDC1-210ENST00000454859 URB2Q14146 1524 aaKnown RBP10.97□□□□□ -0.65
ECHDC1-210ENST00000454859 POLA1P09884 1462 aaPredicted RBP10.96□□□□□ -0.65
ECHDC1-210ENST00000454859 CUL7Q14999 1698 aa10.95□□□□□ -0.66
ECHDC1-210ENST00000454859 WDR62O43379 1518 aa10.95□□□□□ -0.66
ECHDC1-210ENST00000454859 RUSC2Q8N2Y8 1516 aa10.95□□□□□ -0.66
ECHDC1-210ENST00000454859 LOC105371045A0A1W2PR82 267 aa10.95□□□□□ -0.66
ECHDC1-210ENST00000454859 CUX2O14529 1486 aa10.92□□□□□ -0.66
ECHDC1-210ENST00000454859 FAM9AQ8IZU1 332 aaPredicted RBP10.92□□□□□ -0.66
ECHDC1-210ENST00000454859 ABCA5Q8WWZ7 1642 aa10.91□□□□□ -0.66
ECHDC1-210ENST00000454859 TARBP1Q13395 1621 aaKnown RBP10.9□□□□□ -0.66
ECHDC1-210ENST00000454859 IFT140Q96RY7 1462 aa10.88□□□□□ -0.67
ECHDC1-210ENST00000454859 IGF1RP08069 1367 aa10.88□□□□□ -0.67
ECHDC1-210ENST00000454859 THOC2Q8NI27 1593 aaKnown RBP10.87□□□□□ -0.67
ECHDC1-210ENST00000454859 RAPGEF2Q9Y4G8 1499 aa10.87□□□□□ -0.67
ECHDC1-210ENST00000454859 CEP162Q5TB80 1403 aa10.86□□□□□ -0.67
ECHDC1-210ENST00000454859 ERCC6Q03468 1493 aa10.85□□□□□ -0.67
ECHDC1-210ENST00000454859 GAPVD1Q14C86 1478 aa10.83□□□□□ -0.68
ECHDC1-210ENST00000454859 CARMIL1Q5VZK9 1371 aa10.83□□□□□ -0.68
ECHDC1-210ENST00000454859 RAD54L2Q9Y4B4 1467 aa10.82□□□□□ -0.68
ECHDC1-210ENST00000454859 PBRM1Q86U86 1689 aa10.82□□□□□ -0.68
ECHDC1-210ENST00000454859 UBTFP17480 764 aaKnown RBP10.81□□□□□ -0.68
ECHDC1-210ENST00000454859 CTTNBP2Q8WZ74 1663 aa10.79□□□□□ -0.68
ECHDC1-210ENST00000454859 CLIP1P30622 1438 aa10.79□□□□□ -0.68
ECHDC1-210ENST00000454859 GRIN2BQ13224 1484 aa10.78□□□□□ -0.68
ECHDC1-210ENST00000454859 EFCAB5A4FU69 1503 aa10.77□□□□□ -0.69
ECHDC1-210ENST00000454859 FHAD1B1AJZ9 1412 aa10.76□□□□□ -0.69
ECHDC1-210ENST00000454859 ADAMTS12P58397 1594 aa10.75□□□□□ -0.69
ECHDC1-210ENST00000454859 VPS8Q8N3P4 1428 aa10.75□□□□□ -0.69
ECHDC1-210ENST00000454859 MAGI1Q96QZ7 1491 aaPredicted RBP10.74□□□□□ -0.69
ECHDC1-210ENST00000454859 EIF4G3O43432 1585 aaKnown RBP10.71□□□□□ -0.69
ECHDC1-210ENST00000454859 MAP3K1Q13233 1512 aa10.71□□□□□ -0.69
ECHDC1-210ENST00000454859 TDRD9Q8NDG6 1382 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms