RNA–Protein interactions for RNA: ENST00000449372.6

SYNGAP1-204, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 3,930 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-204ENST00000449372 NISCHQ9Y2I1 1504 aa28.27■■■□□ 2.12
SYNGAP1-204ENST00000449372 CCDC180Q9P1Z9 1646 aa24.47■■□□□ 1.51
SYNGAP1-204ENST00000449372 ZCCHC6Q5VYS8 1495 aaKnown RBP23.87■■□□□ 1.41
SYNGAP1-204ENST00000449372 DCAF1Q9Y4B6 1507 aa23.41■■□□□ 1.34
SYNGAP1-204ENST00000449372 SHROOM4Q9ULL8 1493 aa23.23■■□□□ 1.31
SYNGAP1-204ENST00000449372 MYO15BQ96JP2 1530 aa22.96■■□□□ 1.27
SYNGAP1-204ENST00000449372 DCAF8L2P0C7V8 631 aa22.9■■□□□ 1.26
SYNGAP1-204ENST00000449372 PELP1Q8IZL8 1130 aaKnown RBP22.84■■□□□ 1.25
SYNGAP1-204ENST00000449372 ABCC9O60706 1549 aa22.62■■□□□ 1.21
SYNGAP1-204ENST00000449372 NACADO15069 1562 aa22.62■■□□□ 1.21
SYNGAP1-204ENST00000449372 HRCP23327 699 aa22.61■■□□□ 1.21
SYNGAP1-204ENST00000449372 SCRIBQ14160 1630 aa22.51■■□□□ 1.19
SYNGAP1-204ENST00000449372 SUPT5HO00267 1087 aaKnown RBP22.51■■□□□ 1.19
SYNGAP1-204ENST00000449372 RB1CC1Q8TDY2 1594 aa22.29■■□□□ 1.16
SYNGAP1-204ENST00000449372 MYT1Q01538 1121 aa22.16■■□□□ 1.14
SYNGAP1-204ENST00000449372 PPARGC1BQ86YN6 1023 aaKnown RBP22.11■■□□□ 1.13
SYNGAP1-204ENST00000449372 RSF1Q96T23 1441 aaPredicted RBP22.1■■□□□ 1.13
SYNGAP1-204ENST00000449372 UNC13AQ9UPW8 1703 aa22.08■■□□□ 1.13
SYNGAP1-204ENST00000449372 CECR2Q9BXF3 1484 aa21.96■■□□□ 1.11
SYNGAP1-204ENST00000449372 CHIC1Q5VXU3 224 aa21.9■■□□□ 1.1
SYNGAP1-204ENST00000449372 MROH2BQ7Z745 1585 aa21.88■■□□□ 1.09
SYNGAP1-204ENST00000449372 PCGF6Q9BYE7 350 aa21.86■■□□□ 1.09
SYNGAP1-204ENST00000449372 BICRAQ9NZM4 1560 aa21.78■■□□□ 1.08
SYNGAP1-204ENST00000449372 WIZO95785 1651 aa21.75■■□□□ 1.07
SYNGAP1-204ENST00000449372 BAZ1AQ9NRL2 1556 aaPredicted RBP21.74■■□□□ 1.07
SYNGAP1-204ENST00000449372 SCAF1Q9H7N4 1312 aaKnown RBP21.74■■□□□ 1.07
SYNGAP1-204ENST00000449372 SMARCA4P51532 1647 aa21.65■■□□□ 1.06
SYNGAP1-204ENST00000449372 TOP2AP11388 1531 aaKnown RBP21.48■■□□□ 1.03
SYNGAP1-204ENST00000449372 EIF4G1Q04637 1599 aaKnown RBP21.47■■□□□ 1.03
SYNGAP1-204ENST00000449372 PEG3Q9GZU2 1588 aa21.43■■□□□ 1.02
SYNGAP1-204ENST00000449372 PABPN1Q86U42 306 aaKnown RBP eCLIP21.38■■□□□ 1.01
SYNGAP1-204ENST00000449372 SMARCA2P51531 1590 aa21.34■■□□□ 1.01
SYNGAP1-204ENST00000449372 CCDC88BA6NC98 1476 aa21.27■■□□□ 1
SYNGAP1-204ENST00000449372 ATAD2BQ9ULI0 1458 aa21.15■□□□□ 0.98
SYNGAP1-204ENST00000449372 TRIM41Q8WV44 630 aa21.12■□□□□ 0.97
SYNGAP1-204ENST00000449372 LOC105371045A0A1W2PR82 267 aa21.07■□□□□ 0.96
SYNGAP1-204ENST00000449372 ZEB1P37275 1124 aaPredicted RBP21.05■□□□□ 0.96
SYNGAP1-204ENST00000449372 ACIN1Q9UKV3 1341 aaKnown RBP21.03■□□□□ 0.96
SYNGAP1-204ENST00000449372 ABCC8Q09428 1581 aa20.98■□□□□ 0.95
SYNGAP1-204ENST00000449372 BAZ1BQ9UIG0 1483 aaKnown RBP20.98■□□□□ 0.95
SYNGAP1-204ENST00000449372 TRIM26Q12899 539 aaPredicted RBP20.98■□□□□ 0.95
SYNGAP1-204ENST00000449372 TTBK1Q5TCY1 1321 aaPredicted RBP20.96■□□□□ 0.95
SYNGAP1-204ENST00000449372 NEUROD1Q13562 356 aa20.93■□□□□ 0.94
SYNGAP1-204ENST00000449372 HMGXB3Q12766 1538 aa20.92■□□□□ 0.94
SYNGAP1-204ENST00000449372 GTF3C3Q9Y5Q9 886 aa20.91■□□□□ 0.94
SYNGAP1-204ENST00000449372 NCAPD3P42695 1498 aa20.89■□□□□ 0.93
SYNGAP1-204ENST00000449372 FAM9AQ8IZU1 332 aaPredicted RBP20.73■□□□□ 0.91
SYNGAP1-204ENST00000449372 SYNJ1O43426 1573 aa20.73■□□□□ 0.91
SYNGAP1-204ENST00000449372 CENPBP07199 599 aaPredicted RBP20.72■□□□□ 0.91
SYNGAP1-204ENST00000449372 WRNQ14191 1432 aaPredicted RBP eCLIP20.7■□□□□ 0.91e-7■■■■■ 66.8
SYNGAP1-204ENST00000449372 SOGA1O94964 1423 aa20.66■□□□□ 0.9
SYNGAP1-204ENST00000449372 EEA1Q15075 1411 aa20.61■□□□□ 0.89
SYNGAP1-204ENST00000449372 RUSC2Q8N2Y8 1516 aa20.61■□□□□ 0.89
SYNGAP1-204ENST00000449372 BCL11AQ9H165 835 aa20.6■□□□□ 0.89
SYNGAP1-204ENST00000449372 BIVM-ERCC5R4GMW8 1640 aa20.59■□□□□ 0.89
SYNGAP1-204ENST00000449372 TOP2BQ02880 1626 aa20.59■□□□□ 0.89
SYNGAP1-204ENST00000449372 PRDM2Q13029 1718 aa20.57■□□□□ 0.88
SYNGAP1-204ENST00000449372 CC2D2AQ9P2K1 1620 aa20.57■□□□□ 0.88
SYNGAP1-204ENST00000449372 CFTRP13569 1480 aa20.56■□□□□ 0.88
SYNGAP1-204ENST00000449372 KIF21BO75037 1637 aa20.44■□□□□ 0.86
SYNGAP1-204ENST00000449372 CSRNP3Q8WYN3 585 aa20.43■□□□□ 0.86
SYNGAP1-204ENST00000449372 CUX1P39880 1505 aa20.43■□□□□ 0.86
SYNGAP1-204ENST00000449372 TNIKQ9UKE5 1360 aa20.41■□□□□ 0.86
SYNGAP1-204ENST00000449372 EHMT2Q96KQ7 1210 aa20.4■□□□□ 0.86
SYNGAP1-204ENST00000449372 GOLGA3Q08378 1498 aa20.36■□□□□ 0.85
SYNGAP1-204ENST00000449372 DIEXFQ68CQ4 756 aaKnown RBP20.34■□□□□ 0.85
SYNGAP1-204ENST00000449372 CEP162Q5TB80 1403 aa20.33■□□□□ 0.85
SYNGAP1-204ENST00000449372 CADPSQ9ULU8 1353 aa20.33■□□□□ 0.85
SYNGAP1-204ENST00000449372 CEP164Q9UPV0 1460 aa20.32■□□□□ 0.84
SYNGAP1-204ENST00000449372 PRKCSHP14314 528 aaPredicted RBP20.28■□□□□ 0.84
SYNGAP1-204ENST00000449372 RAPGEF2Q9Y4G8 1499 aa20.21■□□□□ 0.83
SYNGAP1-204ENST00000449372 PRXQ9BXM0 1461 aa20.21■□□□□ 0.83
SYNGAP1-204ENST00000449372 ANP32EQ9BTT0 268 aa20.2■□□□□ 0.82
SYNGAP1-204ENST00000449372 ERICH3Q5RHP9 1530 aa20.2■□□□□ 0.82
SYNGAP1-204ENST00000449372 FANCD2Q9BXW9 1451 aa20.12■□□□□ 0.81
SYNGAP1-204ENST00000449372 YTHDC1Q96MU7 727 aaKnown RBP20.1■□□□□ 0.81
SYNGAP1-204ENST00000449372 UBTFP17480 764 aaKnown RBP20.1■□□□□ 0.81
SYNGAP1-204ENST00000449372 LAMC3Q9Y6N6 1575 aa20.1■□□□□ 0.81
SYNGAP1-204ENST00000449372 KIF27Q86VH2 1401 aa20.1■□□□□ 0.81
SYNGAP1-204ENST00000449372 NESP48681 1621 aa20.08■□□□□ 0.81
SYNGAP1-204ENST00000449372 FGD5Q6ZNL6 1462 aa20.07■□□□□ 0.8
SYNGAP1-204ENST00000449372 ERICH6Q7L0X2 663 aa20.07■□□□□ 0.8
SYNGAP1-204ENST00000449372 DNMBPQ6XZF7 1577 aa20.06■□□□□ 0.8
SYNGAP1-204ENST00000449372 CCER1Q8TC90 406 aaPredicted RBP20.04■□□□□ 0.8
SYNGAP1-204ENST00000449372 CLIP1P30622 1438 aa20.03■□□□□ 0.8
SYNGAP1-204ENST00000449372 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.02■□□□□ 0.8
SYNGAP1-204ENST00000449372 TOPBP1Q92547 1522 aa19.99■□□□□ 0.79
SYNGAP1-204ENST00000449372 CUX2O14529 1486 aa19.97■□□□□ 0.79
SYNGAP1-204ENST00000449372 IGF1RP08069 1367 aa19.96■□□□□ 0.79
SYNGAP1-204ENST00000449372 VPS8Q8N3P4 1428 aa19.96■□□□□ 0.79
SYNGAP1-204ENST00000449372 DNAJC5BQ9UF47 199 aa19.96■□□□□ 0.79
SYNGAP1-204ENST00000449372 WDR97A6NE52 1622 aa19.95■□□□□ 0.78
SYNGAP1-204ENST00000449372 POLA1P09884 1462 aaPredicted RBP19.93■□□□□ 0.78
SYNGAP1-204ENST00000449372 ABCA10Q8WWZ4 1543 aa19.93■□□□□ 0.78
SYNGAP1-204ENST00000449372 URB2Q14146 1524 aaKnown RBP19.92■□□□□ 0.78
SYNGAP1-204ENST00000449372 ARAP1Q96P48 1450 aa19.91■□□□□ 0.78
SYNGAP1-204ENST00000449372 KIF21AQ7Z4S6 1674 aa19.9■□□□□ 0.78
SYNGAP1-204ENST00000449372 RAD54L2Q9Y4B4 1467 aa19.86■□□□□ 0.77
SYNGAP1-204ENST00000449372 PDS5BQ9NTI5 1447 aa19.82■□□□□ 0.76
SYNGAP1-204ENST00000449372 TSHZ2Q9NRE2 1034 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms