RNA–Protein interactions for RNA: ENST00000449339.1

AP000253.1-201, humanhuman

TSL 3 BASIC

Gene AP000253.1, Length 2,233 nt, Biotype lincRNA.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP000253.1-201ENST00000449339 NISCHQ9Y2I1 1504 aa35.64■■■■□ 3.3
AP000253.1-201ENST00000449339 CCDC180Q9P1Z9 1646 aa30.85■■■□□ 2.53
AP000253.1-201ENST00000449339 ZCCHC6Q5VYS8 1495 aaKnown RBP29.98■■■□□ 2.39
AP000253.1-201ENST00000449339 DCAF8L2P0C7V8 631 aa29.59■■■□□ 2.33
AP000253.1-201ENST00000449339 SHROOM4Q9ULL8 1493 aa29.52■■■□□ 2.32
AP000253.1-201ENST00000449339 DCAF1Q9Y4B6 1507 aa29.33■■■□□ 2.29
AP000253.1-201ENST00000449339 ABCC9O60706 1549 aa29.17■■■□□ 2.26
AP000253.1-201ENST00000449339 MYO15BQ96JP2 1530 aa28.84■■■□□ 2.21
AP000253.1-201ENST00000449339 NACADO15069 1562 aa28.68■■■□□ 2.18
AP000253.1-201ENST00000449339 SCRIBQ14160 1630 aa28.62■■■□□ 2.17
AP000253.1-201ENST00000449339 SUPT5HO00267 1087 aaKnown RBP28.5■■■□□ 2.15
AP000253.1-201ENST00000449339 RB1CC1Q8TDY2 1594 aa28.4■■■□□ 2.14
AP000253.1-201ENST00000449339 UNC13AQ9UPW8 1703 aa27.98■■■□□ 2.07
AP000253.1-201ENST00000449339 RSF1Q96T23 1441 aaPredicted RBP27.79■■■□□ 2.04
AP000253.1-201ENST00000449339 CECR2Q9BXF3 1484 aa27.79■■■□□ 2.04
AP000253.1-201ENST00000449339 BICRAQ9NZM4 1560 aa27.64■■■□□ 2.01
AP000253.1-201ENST00000449339 PABPN1Q86U42 306 aaKnown RBP eCLIP27.63■■■□□ 2.01
AP000253.1-201ENST00000449339 MROH2BQ7Z745 1585 aa27.63■■■□□ 2.01
AP000253.1-201ENST00000449339 BAZ1AQ9NRL2 1556 aaPredicted RBP27.46■■□□□ 1.99
AP000253.1-201ENST00000449339 WIZO95785 1651 aa27.45■■□□□ 1.98
AP000253.1-201ENST00000449339 SMARCA4P51532 1647 aa27.35■■□□□ 1.97
AP000253.1-201ENST00000449339 CHIC1Q5VXU3 224 aa27.34■■□□□ 1.97
AP000253.1-201ENST00000449339 TOP2AP11388 1531 aaKnown RBP27.04■■□□□ 1.92
AP000253.1-201ENST00000449339 PEG3Q9GZU2 1588 aa26.91■■□□□ 1.9
AP000253.1-201ENST00000449339 SMARCA2P51531 1590 aa26.85■■□□□ 1.89
AP000253.1-201ENST00000449339 CCDC88BA6NC98 1476 aa26.85■■□□□ 1.89
AP000253.1-201ENST00000449339 ATAD2BQ9ULI0 1458 aa26.84■■□□□ 1.89
AP000253.1-201ENST00000449339 EIF4G1Q04637 1599 aaKnown RBP26.76■■□□□ 1.87
AP000253.1-201ENST00000449339 BAZ1BQ9UIG0 1483 aaKnown RBP26.71■■□□□ 1.87
AP000253.1-201ENST00000449339 TRIM41Q8WV44 630 aa26.67■■□□□ 1.86
AP000253.1-201ENST00000449339 NCAPD3P42695 1498 aa26.5■■□□□ 1.83
AP000253.1-201ENST00000449339 HMGXB3Q12766 1538 aa26.47■■□□□ 1.83
AP000253.1-201ENST00000449339 ABCC8Q09428 1581 aa26.46■■□□□ 1.83
AP000253.1-201ENST00000449339 LOC105371045A0A1W2PR82 267 aa26.42■■□□□ 1.82
AP000253.1-201ENST00000449339 FAM9AQ8IZU1 332 aaPredicted RBP26.35■■□□□ 1.81
AP000253.1-201ENST00000449339 CC2D2AQ9P2K1 1620 aa26.34■■□□□ 1.81
AP000253.1-201ENST00000449339 WRNQ14191 1432 aaPredicted RBP eCLIP26.14■■□□□ 1.77
AP000253.1-201ENST00000449339 EHMT2Q96KQ7 1210 aa26.09■■□□□ 1.77
AP000253.1-201ENST00000449339 SYNJ1O43426 1573 aa26.07■■□□□ 1.76
AP000253.1-201ENST00000449339 CFTRP13569 1480 aa26.02■■□□□ 1.76
AP000253.1-201ENST00000449339 SOGA1O94964 1423 aa26■■□□□ 1.75
AP000253.1-201ENST00000449339 RUSC2Q8N2Y8 1516 aa25.92■■□□□ 1.74
AP000253.1-201ENST00000449339 CADPSQ9ULU8 1353 aa25.89■■□□□ 1.73
AP000253.1-201ENST00000449339 PRDM2Q13029 1718 aa25.88■■□□□ 1.73
AP000253.1-201ENST00000449339 TOP2BQ02880 1626 aa25.87■■□□□ 1.73
AP000253.1-201ENST00000449339 BIVM-ERCC5R4GMW8 1640 aa25.82■■□□□ 1.72
AP000253.1-201ENST00000449339 DNAJC5BQ9UF47 199 aa25.8■■□□□ 1.72
AP000253.1-201ENST00000449339 CUX1P39880 1505 aa25.79■■□□□ 1.72
AP000253.1-201ENST00000449339 EEA1Q15075 1411 aa25.78■■□□□ 1.72
AP000253.1-201ENST00000449339 CSRNP3Q8WYN3 585 aa25.76■■□□□ 1.71
AP000253.1-201ENST00000449339 PCGF6Q9BYE7 350 aa25.76■■□□□ 1.71
AP000253.1-201ENST00000449339 NESP48681 1621 aa25.72■■□□□ 1.71
AP000253.1-201ENST00000449339 FANCD2Q9BXW9 1451 aa25.63■■□□□ 1.69
AP000253.1-201ENST00000449339 LAMC3Q9Y6N6 1575 aa25.55■■□□□ 1.68
AP000253.1-201ENST00000449339 GOLGA3Q08378 1498 aa25.53■■□□□ 1.68
AP000253.1-201ENST00000449339 UBTFP17480 764 aaKnown RBP25.52■■□□□ 1.68
AP000253.1-201ENST00000449339 TRIM26Q12899 539 aaPredicted RBP25.52■■□□□ 1.68
AP000253.1-201ENST00000449339 KIF21BO75037 1637 aa25.5■■□□□ 1.67
AP000253.1-201ENST00000449339 TNIKQ9UKE5 1360 aa25.5■■□□□ 1.67
AP000253.1-201ENST00000449339 CEP164Q9UPV0 1460 aa25.49■■□□□ 1.67
AP000253.1-201ENST00000449339 FGD5Q6ZNL6 1462 aa25.47■■□□□ 1.67
AP000253.1-201ENST00000449339 CEP162Q5TB80 1403 aa25.45■■□□□ 1.66
AP000253.1-201ENST00000449339 RAPGEF2Q9Y4G8 1499 aa25.43■■□□□ 1.66
AP000253.1-201ENST00000449339 KIF27Q86VH2 1401 aa25.42■■□□□ 1.66
AP000253.1-201ENST00000449339 DNMBPQ6XZF7 1577 aa25.41■■□□□ 1.66
AP000253.1-201ENST00000449339 HRCP23327 699 aa25.4■■□□□ 1.66
AP000253.1-201ENST00000449339 TOPBP1Q92547 1522 aa25.39■■□□□ 1.65
AP000253.1-201ENST00000449339 CUX2O14529 1486 aa25.37■■□□□ 1.65
AP000253.1-201ENST00000449339 PDS5BQ9NTI5 1447 aa25.36■■□□□ 1.65
AP000253.1-201ENST00000449339 KIF21AQ7Z4S6 1674 aa25.36■■□□□ 1.65
AP000253.1-201ENST00000449339 URB2Q14146 1524 aaKnown RBP25.33■■□□□ 1.65
AP000253.1-201ENST00000449339 PRXQ9BXM0 1461 aa25.33■■□□□ 1.64
AP000253.1-201ENST00000449339 POLA1P09884 1462 aaPredicted RBP25.3■■□□□ 1.64
AP000253.1-201ENST00000449339 RAD54L2Q9Y4B4 1467 aa25.3■■□□□ 1.64
AP000253.1-201ENST00000449339 ERICH3Q5RHP9 1530 aa25.26■■□□□ 1.63
AP000253.1-201ENST00000449339 PPARGC1BQ86YN6 1023 aaKnown RBP25.25■■□□□ 1.63
AP000253.1-201ENST00000449339 IGF1RP08069 1367 aa25.22■■□□□ 1.63
AP000253.1-201ENST00000449339 RANGAP1P46060 587 aaPredicted RBP25.2■■□□□ 1.62
AP000253.1-201ENST00000449339 CLIP1P30622 1438 aa25.18■■□□□ 1.62
AP000253.1-201ENST00000449339 ABCA10Q8WWZ4 1543 aa25.18■■□□□ 1.62
AP000253.1-201ENST00000449339 WDR97A6NE52 1622 aa25.09■■□□□ 1.61
AP000253.1-201ENST00000449339 CARMIL1Q5VZK9 1371 aa25.09■■□□□ 1.61
AP000253.1-201ENST00000449339 MRC2Q9UBG0 1479 aa25.04■■□□□ 1.6
AP000253.1-201ENST00000449339 TDRD9Q8NDG6 1382 aaKnown RBP25.02■■□□□ 1.6
AP000253.1-201ENST00000449339 TTBK1Q5TCY1 1321 aaPredicted RBP25.01■■□□□ 1.59
AP000253.1-201ENST00000449339 TARBP1Q13395 1621 aaKnown RBP24.98■■□□□ 1.59
AP000253.1-201ENST00000449339 ABCA5Q8WWZ7 1642 aa24.98■■□□□ 1.59
AP000253.1-201ENST00000449339 VPS8Q8N3P4 1428 aa24.96■■□□□ 1.59
AP000253.1-201ENST00000449339 GAPVD1Q14C86 1478 aa24.93■■□□□ 1.58
AP000253.1-201ENST00000449339 ERCC6Q03468 1493 aa24.92■■□□□ 1.58
AP000253.1-201ENST00000449339 ARAP1Q96P48 1450 aa24.92■■□□□ 1.58
AP000253.1-201ENST00000449339 CUL7Q14999 1698 aa24.91■■□□□ 1.58
AP000253.1-201ENST00000449339 WDR62O43379 1518 aa24.89■■□□□ 1.58
AP000253.1-201ENST00000449339 ARHGAP35Q9NRY4 1499 aa24.86■■□□□ 1.57
AP000253.1-201ENST00000449339 AQRO60306 1485 aaKnown RBP eCLIP24.82■■□□□ 1.56
AP000253.1-201ENST00000449339 THOC2Q8NI27 1593 aaKnown RBP24.8■■□□□ 1.56
AP000253.1-201ENST00000449339 PBRM1Q86U86 1689 aa24.78■■□□□ 1.56
AP000253.1-201ENST00000449339 ZNF608Q9ULD9 1512 aaPredicted RBP24.76■■□□□ 1.55
AP000253.1-201ENST00000449339 IFT140Q96RY7 1462 aa24.76■■□□□ 1.55
AP000253.1-201ENST00000449339 ZEB1P37275 1124 aaPredicted RBP24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms