RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 DDX3XO00571 662 aaKnown RBP eCLIP28.42■■■□□ 2.141e-23■■□□□ 13.3
CBX4-202ENST00000448310 DHX30Q7L2E3 1194 aaKnown RBP eCLIP33.55■■■□□ 2.961e-13■□□□□ 9.5
CBX4-202ENST00000448310 FTOQ9C0B1 505 aaKnown RBP eCLIP32.85■■■□□ 2.859e-12■■■■■ 29.8
CBX4-202ENST00000448310 PUM1Q14671 1186 aaKnown RBP eCLIP30.39■■■□□ 2.461e-11■□□□□ 10.1
CBX4-202ENST00000448310 PPIGQ13427 754 aaKnown RBP eCLIP33.22■■■□□ 2.914e-11■■□□□ 13.5
CBX4-202ENST00000448310 DDX51Q8N8A6 666 aaKnown RBP eCLIP29.43■■■□□ 2.31e-10■■■■□ 20.7
CBX4-202ENST00000448310 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP31.08■■■□□ 2.572e-10■■■■□ 26.4
CBX4-202ENST00000448310 U2AF2P26368 475 aaKnown RBP eCLIP31.14■■■□□ 2.587e-10■■□□□ 13.4
CBX4-202ENST00000448310 GTF2F1P35269 517 aaKnown RBP eCLIP32.06■■■□□ 2.727e-10■■■■■ 142.2
CBX4-202ENST00000448310 NONOQ15233 471 aaKnown RBP eCLIP31.83■■■□□ 2.691e-9■■■□□ 18.4
CBX4-202ENST00000448310 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP44.34■■■■■ 4.691e-8■■■■□ 26.5
CBX4-202ENST00000448310 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.99■■■□□ 2.391e-8■■■■■ 241.7
CBX4-202ENST00000448310 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP24.56■■□□□ 1.522e-8■■■■■ 39.6
CBX4-202ENST00000448310 U2AF1Q01081 240 aaKnown RBP eCLIP37.87■■■■□ 3.653e-8■■■■□ 20
CBX4-202ENST00000448310 RBM15Q96T37 977 aaKnown RBP eCLIP28.41■■■□□ 2.143e-8■■■■■ 26.8
CBX4-202ENST00000448310 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP29.04■■■□□ 2.243e-8■■■■□ 24.6
CBX4-202ENST00000448310 NCBP2P52298 156 aaKnown RBP eCLIP25.59■■□□□ 1.693e-8■□□□□ 10.1
CBX4-202ENST00000448310 SLTMQ9NWH9 1034 aaKnown RBP eCLIP29.21■■■□□ 2.273e-8■■■■■ 30.4
CBX4-202ENST00000448310 DDX55Q8NHQ9 600 aaKnown RBP eCLIP35.3■■■■□ 3.245e-8■■■■□ 20.7
CBX4-202ENST00000448310 XRCC6P12956 609 aaKnown RBP eCLIP31.36■■■□□ 2.615e-8■□□□□ 10.6
CBX4-202ENST00000448310 SF3B4Q15427 424 aaKnown RBP eCLIP25.78■■□□□ 1.725e-8■■■■□ 23.9
CBX4-202ENST00000448310 AQRO60306 1485 aaKnown RBP eCLIP51.51■■■■■ 5.845e-8■■■■■ 28.1
CBX4-202ENST00000448310 SMNDC1O75940 238 aaKnown RBP eCLIP25.55■■□□□ 1.681e-7■■■□□ 15.1
CBX4-202ENST00000448310 CDC40O60508 579 aaKnown RBP eCLIP26.34■■□□□ 1.811e-7■■■■□ 23.9
CBX4-202ENST00000448310 EFTUD2Q15029 972 aaKnown RBP eCLIP26.25■■□□□ 1.792e-7■■■■□ 23.9
CBX4-202ENST00000448310 SDAD1Q9NVU7 687 aaKnown RBP eCLIP26.05■■□□□ 1.762e-7■■□□□ 14.3
CBX4-202ENST00000448310 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP26.79■■□□□ 1.882e-7■■■□□ 16.2
CBX4-202ENST00000448310 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP46.81■■■■■ 5.082e-7■■■□□ 18.4
CBX4-202ENST00000448310 CSTF2P33240 577 aaKnown RBP eCLIP28.04■■■□□ 2.083e-7■□□□□ 10.7
CBX4-202ENST00000448310 XRN2Q9H0D6 950 aaKnown RBP eCLIP34.35■■■■□ 3.094e-7■■■■□ 25.9
CBX4-202ENST00000448310 ZNF622Q969S3 477 aaKnown RBP eCLIP37.62■■■■□ 3.615e-7■■□□□ 14.4
CBX4-202ENST00000448310 RBFOX2O43251 390 aaKnown RBP eCLIP21.2■□□□□ 0.986e-7■■■■□ 23.2
CBX4-202ENST00000448310 HLTFQ14527 1009 aaKnown RBP eCLIP28.3■■■□□ 2.126e-7■□□□□ 8.6
CBX4-202ENST00000448310 RPS3P23396 243 aaKnown RBP eCLIP27.08■■□□□ 1.937e-7■□□□□ 11
CBX4-202ENST00000448310 RBM22Q9NW64 420 aaKnown RBP eCLIP28.15■■■□□ 2.17e-7■■■■□ 21
CBX4-202ENST00000448310 BUD13Q9BRD0 619 aaKnown RBP eCLIP33.26■■■□□ 2.917e-7■■■□□ 15.3
CBX4-202ENST00000448310 XPO5Q9HAV4 1204 aaKnown RBP eCLIP34.77■■■■□ 3.167e-7■□□□□ 11.3
CBX4-202ENST00000448310 METAP2P50579 478 aaKnown RBP eCLIP32.24■■■□□ 2.758e-7■□□□□ 9.4
CBX4-202ENST00000448310 AATFQ9NY61 560 aaKnown RBP eCLIP34.72■■■■□ 3.158e-7■■□□□ 12.5
CBX4-202ENST00000448310 PRPF4O43172 522 aaKnown RBP eCLIP26.87■■□□□ 1.899e-7■■■■□ 22.3
CBX4-202ENST00000448310 GRWD1Q9BQ67 446 aaKnown RBP eCLIP44.12■■■■■ 4.659e-7■■□□□ 13
CBX4-202ENST00000448310 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP28■■■□□ 2.071e-6■■■□□ 16
CBX4-202ENST00000448310 LSM11P83369 360 aaKnown RBP eCLIP24.6■■□□□ 1.531e-6■■■■■ 28.9
CBX4-202ENST00000448310 FUSP35637 526 aaKnown RBP eCLIP19.32■□□□□ 0.681e-6■■■■□ 21.4
CBX4-202ENST00000448310 NKRFO15226 690 aaKnown RBP eCLIP33.05■■■□□ 2.881e-6■□□□□ 10.1
CBX4-202ENST00000448310 DDX42Q86XP3 938 aaKnown RBP eCLIP29.99■■■□□ 2.391e-6■■■■□ 20.6
CBX4-202ENST00000448310 PCBP2Q15366 365 aaKnown RBP eCLIP26.03■■□□□ 1.761e-6■■■□□ 15.4
CBX4-202ENST00000448310 SF3B1O75533 1304 aaKnown RBP eCLIP31.21■■■□□ 2.591e-6■■■■■ 30
CBX4-202ENST00000448310 GPKOWQ92917 476 aaPredicted RBP eCLIP32.78■■■□□ 2.842e-6■■■□□ 16
CBX4-202ENST00000448310 AARSP49588 968 aaKnown RBP eCLIP30.74■■■□□ 2.512e-6■■■■□ 23
CBX4-202ENST00000448310 EWSR1Q01844 656 aaKnown RBP eCLIP21■□□□□ 0.952e-6■■■■■ 28.6
CBX4-202ENST00000448310 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP22.88■■□□□ 1.252e-6■■■□□ 16.5
CBX4-202ENST00000448310 FXR2P51116 673 aaKnown RBP eCLIP31.2■■■□□ 2.593e-6■□□□□ 10.5
CBX4-202ENST00000448310 FKBP4Q02790 459 aaKnown RBP eCLIP37.18■■■■□ 3.543e-6■■■□□ 17
CBX4-202ENST00000448310 SF3A3Q12874 501 aaKnown RBP eCLIP24.11■■□□□ 1.453e-6■■■■■ 27.2
CBX4-202ENST00000448310 DDX6P26196 483 aaKnown RBP eCLIP30.35■■■□□ 2.453e-6■■■■□ 23.9
CBX4-202ENST00000448310 MTPAPQ9NVV4 582 aaKnown RBP eCLIP29.81■■■□□ 2.364e-6■■□□□ 13.4
CBX4-202ENST00000448310 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP26.46■■□□□ 1.839e-6■■□□□ 11.8
CBX4-202ENST00000448310 WDR43Q15061 677 aaKnown RBP eCLIP37.05■■■■□ 3.521e-5■■□□□ 14.2
Retrieved 59 of 59 RNA–protein pairs in 13.5 ms