RNA–Protein interactions for RNA: ENST00000447510.6

PROM1-201, Transcript of prominin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PROM1, Length 3,977 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-201ENST00000447510 NISCHQ9Y2I1 1504 aa12.98□□□□□ -0.33
PROM1-201ENST00000447510 DCAF8L2P0C7V8 631 aa11.35□□□□□ -0.59
PROM1-201ENST00000447510 CCDC180Q9P1Z9 1646 aa11.29□□□□□ -0.6
PROM1-201ENST00000447510 ABCC9O60706 1549 aa11.18□□□□□ -0.62
PROM1-201ENST00000447510 ZCCHC6Q5VYS8 1495 aaKnown RBP10.81□□□□□ -0.68
PROM1-201ENST00000447510 SHROOM4Q9ULL8 1493 aa10.79□□□□□ -0.68
PROM1-201ENST00000447510 RB1CC1Q8TDY2 1594 aa10.69□□□□□ -0.7
PROM1-201ENST00000447510 NACADO15069 1562 aa10.68□□□□□ -0.7
PROM1-201ENST00000447510 DCAF1Q9Y4B6 1507 aa10.62□□□□□ -0.71
PROM1-201ENST00000447510 PABPN1Q86U42 306 aaKnown RBP eCLIP10.61□□□□□ -0.71
PROM1-201ENST00000447510 MYO15BQ96JP2 1530 aa10.56□□□□□ -0.72
PROM1-201ENST00000447510 SCRIBQ14160 1630 aa10.55□□□□□ -0.72
PROM1-201ENST00000447510 SUPT5HO00267 1087 aaKnown RBP10.37□□□□□ -0.75
PROM1-201ENST00000447510 UNC13AQ9UPW8 1703 aa10.21□□□□□ -0.78
PROM1-201ENST00000447510 BICRAQ9NZM4 1560 aa10.2□□□□□ -0.78
PROM1-201ENST00000447510 CECR2Q9BXF3 1484 aa10.15□□□□□ -0.78
PROM1-201ENST00000447510 BAZ1AQ9NRL2 1556 aaPredicted RBP10.08□□□□□ -0.8
PROM1-201ENST00000447510 RSF1Q96T23 1441 aaPredicted RBP10.04□□□□□ -0.8
PROM1-201ENST00000447510 EIF4G1Q04637 1599 aaKnown RBP10.04□□□□□ -0.8
PROM1-201ENST00000447510 MROH2BQ7Z745 1585 aa10.03□□□□□ -0.8
PROM1-201ENST00000447510 DNAJC5BQ9UF47 199 aa9.99□□□□□ -0.81
PROM1-201ENST00000447510 SMARCA4P51532 1647 aa9.99□□□□□ -0.81
PROM1-201ENST00000447510 BAZ1BQ9UIG0 1483 aaKnown RBP9.98□□□□□ -0.81
PROM1-201ENST00000447510 SMARCA2P51531 1590 aa9.96□□□□□ -0.82
PROM1-201ENST00000447510 ATAD2BQ9ULI0 1458 aa9.95□□□□□ -0.82
PROM1-201ENST00000447510 CC2D2AQ9P2K1 1620 aa9.95□□□□□ -0.82
PROM1-201ENST00000447510 WIZO95785 1651 aa9.91□□□□□ -0.82
PROM1-201ENST00000447510 NCAPD3P42695 1498 aa9.88□□□□□ -0.83
PROM1-201ENST00000447510 TOP2AP11388 1531 aaKnown RBP9.82□□□□□ -0.84
PROM1-201ENST00000447510 HMGXB3Q12766 1538 aa9.79□□□□□ -0.84
PROM1-201ENST00000447510 CCDC88BA6NC98 1476 aa9.77□□□□□ -0.84
PROM1-201ENST00000447510 PEG3Q9GZU2 1588 aa9.76□□□□□ -0.85
PROM1-201ENST00000447510 TRIM41Q8WV44 630 aa9.73□□□□□ -0.85
PROM1-201ENST00000447510 CADPSQ9ULU8 1353 aa9.72□□□□□ -0.85
PROM1-201ENST00000447510 ERCC6Q03468 1493 aa9.7□□□□□ -0.86
PROM1-201ENST00000447510 PDS5BQ9NTI5 1447 aa9.67□□□□□ -0.86
PROM1-201ENST00000447510 NESP48681 1621 aa9.65□□□□□ -0.86
PROM1-201ENST00000447510 FAM9AQ8IZU1 332 aaPredicted RBP9.64□□□□□ -0.87
PROM1-201ENST00000447510 CHIC1Q5VXU3 224 aa9.62□□□□□ -0.87
PROM1-201ENST00000447510 CFTRP13569 1480 aa9.6□□□□□ -0.87
PROM1-201ENST00000447510 EHMT2Q96KQ7 1210 aa9.6□□□□□ -0.87
PROM1-201ENST00000447510 FANCD2Q9BXW9 1451 aa9.59□□□□□ -0.87
PROM1-201ENST00000447510 HRCP23327 699 aa9.58□□□□□ -0.88
PROM1-201ENST00000447510 CEP164Q9UPV0 1460 aa9.58□□□□□ -0.88
PROM1-201ENST00000447510 PELP1Q8IZL8 1130 aaKnown RBP9.58□□□□□ -0.88
PROM1-201ENST00000447510 PPARGC1BQ86YN6 1023 aaKnown RBP9.57□□□□□ -0.88
PROM1-201ENST00000447510 LAMC3Q9Y6N6 1575 aa9.56□□□□□ -0.88
PROM1-201ENST00000447510 WRNQ14191 1432 aaPredicted RBP eCLIP9.55□□□□□ -0.88
PROM1-201ENST00000447510 PCGF6Q9BYE7 350 aa9.51□□□□□ -0.89
PROM1-201ENST00000447510 ABCC8Q09428 1581 aa9.51□□□□□ -0.89
PROM1-201ENST00000447510 FBLN2P98095 1184 aa9.47□□□□□ -0.89
PROM1-201ENST00000447510 MRC2Q9UBG0 1479 aa9.47□□□□□ -0.89
PROM1-201ENST00000447510 SOGA1O94964 1423 aa9.44□□□□□ -0.9
PROM1-201ENST00000447510 UBTFP17480 764 aaKnown RBP9.43□□□□□ -0.9
PROM1-201ENST00000447510 RANGAP1P46060 587 aaPredicted RBP9.43□□□□□ -0.9
PROM1-201ENST00000447510 TOPBP1Q92547 1522 aa9.41□□□□□ -0.9
PROM1-201ENST00000447510 TDRD9Q8NDG6 1382 aaKnown RBP9.41□□□□□ -0.9
PROM1-201ENST00000447510 KIF21AQ7Z4S6 1674 aa9.4□□□□□ -0.9
PROM1-201ENST00000447510 FGD5Q6ZNL6 1462 aa9.4□□□□□ -0.9
PROM1-201ENST00000447510 URB2Q14146 1524 aaKnown RBP9.39□□□□□ -0.91
PROM1-201ENST00000447510 CUX2O14529 1486 aa9.39□□□□□ -0.91
PROM1-201ENST00000447510 CSRNP3Q8WYN3 585 aa9.39□□□□□ -0.91
PROM1-201ENST00000447510 CUX1P39880 1505 aa9.39□□□□□ -0.91
PROM1-201ENST00000447510 RAD54L2Q9Y4B4 1467 aa9.38□□□□□ -0.91
PROM1-201ENST00000447510 DNMBPQ6XZF7 1577 aa9.38□□□□□ -0.91
PROM1-201ENST00000447510 KIF27Q86VH2 1401 aa9.37□□□□□ -0.91
PROM1-201ENST00000447510 CHMP7Q8WUX9 453 aaPredicted RBP9.37□□□□□ -0.91
PROM1-201ENST00000447510 SYNJ1O43426 1573 aa9.36□□□□□ -0.91
PROM1-201ENST00000447510 POLA1P09884 1462 aaPredicted RBP9.35□□□□□ -0.91
PROM1-201ENST00000447510 PRDM2Q13029 1718 aa9.34□□□□□ -0.91
PROM1-201ENST00000447510 IFT140Q96RY7 1462 aa9.33□□□□□ -0.92
PROM1-201ENST00000447510 TOP2BQ02880 1626 aa9.33□□□□□ -0.92
PROM1-201ENST00000447510 LOC105371045A0A1W2PR82 267 aa9.32□□□□□ -0.92
PROM1-201ENST00000447510 AQRO60306 1485 aaKnown RBP eCLIP9.32□□□□□ -0.92
PROM1-201ENST00000447510 TTBK1Q5TCY1 1321 aaPredicted RBP9.32□□□□□ -0.92
PROM1-201ENST00000447510 WDR62O43379 1518 aa9.31□□□□□ -0.92
PROM1-201ENST00000447510 GAPVD1Q14C86 1478 aa9.29□□□□□ -0.92
PROM1-201ENST00000447510 EEA1Q15075 1411 aa9.29□□□□□ -0.92
PROM1-201ENST00000447510 CARMIL1Q5VZK9 1371 aa9.27□□□□□ -0.92
PROM1-201ENST00000447510 THOC2Q8NI27 1593 aaKnown RBP9.27□□□□□ -0.93
PROM1-201ENST00000447510 RUSC2Q8N2Y8 1516 aa9.26□□□□□ -0.93
PROM1-201ENST00000447510 ZNF608Q9ULD9 1512 aaPredicted RBP9.26□□□□□ -0.93
PROM1-201ENST00000447510 BIVM-ERCC5R4GMW8 1640 aa9.26□□□□□ -0.93
PROM1-201ENST00000447510 ATP1B4Q9UN42 357 aaPredicted RBP9.25□□□□□ -0.93
PROM1-201ENST00000447510 MYT1Q01538 1121 aa9.25□□□□□ -0.93
PROM1-201ENST00000447510 ABCA10Q8WWZ4 1543 aa9.25□□□□□ -0.93
PROM1-201ENST00000447510 SCAF1Q9H7N4 1312 aaKnown RBP9.24□□□□□ -0.93
PROM1-201ENST00000447510 GRIN2BQ13224 1484 aa9.24□□□□□ -0.93
PROM1-201ENST00000447510 IGF1RP08069 1367 aa9.23□□□□□ -0.93
PROM1-201ENST00000447510 P3H3Q8IVL6 736 aa9.21□□□□□ -0.93
PROM1-201ENST00000447510 OSCARQ8IYS5 282 aa9.2□□□□□ -0.94
PROM1-201ENST00000447510 APLP2Q06481 763 aa9.2□□□□□ -0.94
PROM1-201ENST00000447510 SNAPC4Q5SXM2 1469 aa9.19□□□□□ -0.94
PROM1-201ENST00000447510 FHAD1B1AJZ9 1412 aa9.18□□□□□ -0.94
PROM1-201ENST00000447510 GOLGA3Q08378 1498 aa9.17□□□□□ -0.94
PROM1-201ENST00000447510 RAPGEF2Q9Y4G8 1499 aa9.17□□□□□ -0.94
PROM1-201ENST00000447510 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.16□□□□□ -0.94
PROM1-201ENST00000447510 HNRNPUL2Q1KMD3 747 aaKnown RBP9.16□□□□□ -0.94
PROM1-201ENST00000447510 TARBP1Q13395 1621 aaKnown RBP9.16□□□□□ -0.94
PROM1-201ENST00000447510 EIF4G3O43432 1585 aaKnown RBP9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms